Yes, I think so. There should be a y.fsgd file in the output folder, and that will have the actual order used.Hi,
I’m trying to extract the average thickness per subject in significant clusters from a Qdec analysis, and hope to clarify 2 things re: the “cache.th13.abs.y.ocn.dat“ output from this command:mri_glmfit-sim --glmdir (dir) --cache 1.3 abs --cwp 0.05 —2spaces
I’ve attached all relevant output files.
This analysis has 2 clusters, and I understand the 2 clusters match the order of the clusters in the cache.th13.abs.sig.cluster.summary file (left=cluster 1, right=cluster 2).1) Would you please confirm whether the rows of the cache.th13.abs.y.ocn.dat“ match the order of subjects listed in the qdec.fsgd file?
Not from mri_glmfit-sim. But you can look in the log file and pull out the mri_surfcluster command line, remove the --no-fixmni argument, and just re-run it.2) Also, I noticed the cache.th13.abs.sig.cluster.summary file lists MNI coordinates – is there a way to get this to print Talairach coordinates from the mri_glmfit-sim command? If not, that’s fine – I can get them from qdec but just curious.
Thanks!Andrea
--Andrea Gold, Ph.D.Section on Development and Affective NeuroscienceNational Institute of Mental Health
Room 201, Bldg. 15K, MSC 2670
Bethesda, MD 20892-2670
Phone: 301-827-9804
Fax: 301-402-2010Email: andrea.gold@nih.gov
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