Yes, I have this exact same problem. I have uploaded two rounds of data for review to the ftp service a week or so ago and I believe they are being reviewed.
After several days of testing on my end with various permutations of flags and cross and long runs and intervention points I didn’t see a single white matter surface change to reflect any
edits.
I used this exact same protocol on a very large dataset (N>300) using only cross runs on Freesurfer 5.3 on Linux about 1.5 years back and didn’t have this problem. I have tested this latest
dataset on both Mac and Linux, 5.3 and 6.0, cross and long, and nothing has changed the white matter surfaces.
I’m really baffled.
Best,
David P. Semanek, HCISPP
Research Technician, Posner Lab
Division of Child and Adolescent Psychiatry
Columbia University Medical Center
New York State Psychiatric Institute
1051 Riverside Drive, Pardes Bldg. Rm. 2424
New York, NY 10032
PH: (646) 774-5885
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From:
Octavian Lie <octavian.lie@gmail.com>
Date: Monday, April 3, 2017 at 11:26 AM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] wm edits not incorporated