Sat Dec 31 09:47:37 CST 2022 cd /home/mckj/software/freesurfer/subjects/T2 setenv SUBJECTS_DIR /home/mckj/software/freesurfer/subjects /home/mckj/software/freesurfer/bin/recon-all -i sample-002.mgz -s T2 subjid T2 setenv SUBJECTS_DIR /home/mckj/software/freesurfer/subjects FREESURFER_HOME /home/mckj/software/freesurfer Actual FREESURFER_HOME /home/mckj/software/freesurfer build-stamp.txt: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 Linux mckj-System-Product-Name 5.15.0-52-generic #58-Ubuntu SMP Thu Oct 13 08:03:55 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4076108 kbytes maxproc 127102 maxlocks unlimited maxsignal 127102 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 25Gi 632Mi 3.6Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:37-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/mckj/software/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/mckj/software/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /home/mckj/software/freesurfer/subjects/T2 mri_convert /home/mckj/software/freesurfer/subjects/sample-002.mgz /home/mckj/software/freesurfer/subjects/T2/mri/orig/001.mgz mri_convert /home/mckj/software/freesurfer/subjects/sample-002.mgz /home/mckj/software/freesurfer/subjects/T2/mri/orig/001.mgz reading from /home/mckj/software/freesurfer/subjects/sample-002.mgz... TR=7.25, TE=3.22, TI=600.00, flip angle=7.00 i_ras = (-0, -1, -0) j_ras = (-0, 0, -1) k_ras = (-1, 0, 0) writing to /home/mckj/software/freesurfer/subjects/T2/mri/orig/001.mgz... @#@FSTIME 2022:12:31:09:47:37 mri_convert N 2 e 1.14 S 0.00 U 1.14 P 100% M 23856 F 0 R 4551 W 0 c 5 w 1 I 0 O 12224 L 0.18 0.38 0.30 @#@FSLOADPOST 2022:12:31:09:47:38 mri_convert N 2 0.18 0.38 0.30 Started at Sat Dec 31 09:47:37 CST 2022 Ended at Sat Dec 31 09:47:38 CST 2022 #@#%# recon-all-run-time-hours 0.000 recon-all -s T2 finished without error at Sat Dec 31 09:47:38 CST 2022 #New# invocation of recon-all Sat Dec 31 09:47:43 CST 2022 cd /home/mckj/software/freesurfer/subjects/T2 setenv SUBJECTS_DIR /home/mckj/software/freesurfer/subjects /home/mckj/software/freesurfer/bin/recon-all -s T2 -all subjid T2 setenv SUBJECTS_DIR /home/mckj/software/freesurfer/subjects FREESURFER_HOME /home/mckj/software/freesurfer Actual FREESURFER_HOME /home/mckj/software/freesurfer build-stamp.txt: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 Linux mckj-System-Product-Name 5.15.0-52-generic #58-Ubuntu SMP Thu Oct 13 08:03:55 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4076108 kbytes maxproc 127102 maxlocks unlimited maxsignal 127102 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 25Gi 630Mi 3.6Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2022/12/31-01:47:43-GMT BuildTime: Aug 4 2022 05:48:18 BuildStamp: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275 User: mckj Machine: mckj-System-Product-Name Platform: Linux PlatformVersion: 5.15.0-52-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/mckj/software/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/mckj/software/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# MotionCor Sat Dec 31 09:47:43 CST 2022 Found 1 runs /home/mckj/software/freesurfer/subjects/T2/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /home/mckj/software/freesurfer/subjects/T2/mri/orig/001.mgz /home/mckj/software/freesurfer/subjects/T2/mri/rawavg.mgz mri_info /home/mckj/software/freesurfer/subjects/T2/mri/rawavg.mgz rawavg.mgz ======================================== Volume information for /home/mckj/software/freesurfer/subjects/T2/mri/rawavg.mgz type: MGH dimensions: 256 x 256 x 128 voxel sizes: 1.000000, 1.000000, 1.328125 type: SHORT (4) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -85.0, zend: 85.0 TR: 7.25 msec, TE: 3.22 msec, TI: 600.00 msec, flip angle: 7.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -0.0000, y_r = -0.0000, z_r = -1.0000, c_r = 5.3607 : x_a = -1.0000, y_a = 0.0000, z_a = 0.0000, c_a = 44.3249 : x_s = -0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -6.1644 talairach xfm : Orientation : PIL Primary Slice Direction: sagittal voxel to ras transform: -0.0000 -0.0000 -1.3281 90.3607 -1.0000 0.0000 0.0000 172.3249 -0.0000 -1.0000 0.0000 121.8356 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1.32812 ras to voxel transform: -0.0000 -1.0000 -0.0000 172.3249 -0.0000 -0.0000 -1.0000 121.8356 -0.7529 -0.0000 -0.0000 68.0363 -0.0000 -0.0000 -0.0000 1.0000 /home/mckj/software/freesurfer/subjects/T2 mri_convert /home/mckj/software/freesurfer/subjects/T2/mri/rawavg.mgz /home/mckj/software/freesurfer/subjects/T2/mri/orig.mgz --conform mri_convert /home/mckj/software/freesurfer/subjects/T2/mri/rawavg.mgz /home/mckj/software/freesurfer/subjects/T2/mri/orig.mgz --conform reading from /home/mckj/software/freesurfer/subjects/T2/mri/rawavg.mgz... TR=7.25, TE=3.22, TI=600.00, flip angle=7.00 i_ras = (-0, -1, -0) j_ras = (-0, 0, -1) k_ras = (-1, 0, 0) changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram 0 139 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /home/mckj/software/freesurfer/subjects/T2/mri/orig.mgz... @#@FSTIME 2022:12:31:09:47:47 mri_convert N 3 e 1.37 S 0.00 U 1.37 P 100% M 32048 F 0 R 14860 W 0 c 19 w 1 I 0 O 17224 L 0.23 0.39 0.31 @#@FSLOADPOST 2022:12:31:09:47:48 mri_convert N 3 0.23 0.39 0.31 mri_add_xform_to_header -c /home/mckj/software/freesurfer/subjects/T2/mri/transforms/talairach.xfm /home/mckj/software/freesurfer/subjects/T2/mri/orig.mgz /home/mckj/software/freesurfer/subjects/T2/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2022:12:31:09:47:48 mri_add_xform_to_header N 4 e 0.55 S 0.01 U 0.54 P 99% M 23632 F 0 R 4580 W 0 c 5 w 3 I 0 O 17224 L 0.23 0.39 0.31 @#@FSLOADPOST 2022:12:31:09:47:49 mri_add_xform_to_header N 4 0.23 0.39 0.31 mri_info /home/mckj/software/freesurfer/subjects/T2/mri/orig.mgz orig.mgz ======================================== Volume information for /home/mckj/software/freesurfer/subjects/T2/mri/orig.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 7.25 msec, TE: 3.22 msec, TI: 600.00 msec, flip angle: 7.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 5.3607 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 44.3249 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -6.1644 talairach xfm : /home/mckj/software/freesurfer/subjects/T2/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 0.0000 0.0000 133.3607 0.0000 0.0000 1.0000 -83.6751 0.0000 -1.0000 0.0000 121.8356 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 -0.0000 -0.0000 133.3607 -0.0000 -0.0000 -1.0000 121.8356 -0.0000 1.0000 -0.0000 83.6751 -0.0000 -0.0000 -0.0000 1.0000 #-------------------------------------------- #@# Talairach Sat Dec 31 09:47:49 CST 2022 /home/mckj/software/freesurfer/subjects/T2/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /home/mckj/software/freesurfer/subjects/T2/mri /home/mckj/software/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.3.2 Linux mckj-System-Product-Name 5.15.0-52-generic #58-Ubuntu SMP Thu Oct 13 08:03:55 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux Sat Dec 31 09:47:49 CST 2022 tmpdir is ./tmp.mri_nu_correct.mni.8010 cd /home/mckj/software/freesurfer/subjects/T2/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.8010/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.8010/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.8010/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.8010/nu0.mgz... TR=7.25, TE=3.22, TI=600.00, flip angle=7.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Sat Dec 31 09:49:07 CST 2022 mri_nu_correct.mni done @#@FSTIME 2022:12:31:09:47:49 mri_nu_correct.mni N 12 e 78.80 S 0.11 U 78.70 P 100% M 520008 F 0 R 145971 W 0 c 528 w 95 I 0 O 31264 L 0.23 0.39 0.31 @#@FSLOADPOST 2022:12:31:09:49:07 mri_nu_correct.mni N 12 1.25 0.68 0.42 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... ERROR: mpr2mni305 failed, see transforms/talairach_avi.log Command exited with non-zero status 1 @#@FSTIME 2022:12:31:09:49:07 talairach_avi N 4 e 0.46 S 0.05 U 0.40 P 100% M 83740 F 1 R 28285 W 0 c 7 w 54 I 0 O 163888 L 1.25 0.68 0.42 @#@FSLOADPOST 2022:12:31:09:49:08 talairach_avi N 4 1.25 0.68 0.42 Linux mckj-System-Product-Name 5.15.0-52-generic #58-Ubuntu SMP Thu Oct 13 08:03:55 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux recon-all -s T2 exited with ERRORS at Sat Dec 31 09:49:08 CST 2022 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting