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Hi Freesurfer experts,
I have been trying to segment thalamus using  segment_subregions command available in freesurfer 7.3.2.

Unfortunately, I have been encountering the following error.

IN-NSCC-050385:~ mdalamin$ segment_subregions thalamus --cross sub-0023

Step 1: preprocessing inputs for thalamus segmentation

Running command: mri_convert /var/folders/3b/zd9p0z7s6nx_m1_xyg0tqqj0dgxn6r/T/tmpzh3k0uay/tempImage.mgz /var/folders/3b/zd9p0z7s6nx_m1_xyg0tqqj0dgxn6r/T/tmpzh3k0uay/tempImage.mgz -odt float -rt cubic -vs 0.5 0.5 0.5

Preprocessing took 6 seconds


Step 2: aligning atlas to reference segmentation

Traceback (most recent call last):

  File "/Applications/freesurfer/7.3.2//python/scripts/segment_subregions", line 99, in <module>

    subregions.run_cross_sectional(args.structure, parameters)

  File "/Applications/freesurfer/7.3.2/python/packages/freesurfer/subregions/process.py", line 52, in run_cross_sectional

    model.align_atlas_to_seg()

  File "/Applications/freesurfer/7.3.2/python/packages/freesurfer/subregions/core.py", line 240, in align_atlas_to_seg

    mask = mask.resize(1, interp='nearest')

TypeError: resize() got an unexpected keyword argument 'interp'



Any suggestions to troubleshoot this problem?

Kind regards

Md. Mamun Al-Amin, PhD
---------------------------
Postdoctoral Fellow
Stark Neuroscience Research Institute

Indiana University School of Medicine

320 W. 15th Street, NB Bldg Rm 103

Indianapolis, IN 46202