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IN-NSCC-050385:~ mdalamin$ segment_subregions thalamus --cross sub-0023
Step 1: preprocessing inputs for thalamus segmentation
Running command: mri_convert /var/folders/3b/zd9p0z7s6nx_m1_xyg0tqqj0dgxn6r/T/tmpzh3k0uay/tempImage.mgz /var/folders/3b/zd9p0z7s6nx_m1_xyg0tqqj0dgxn6r/T/tmpzh3k0uay/tempImage.mgz -odt float -rt cubic -vs 0.5 0.5 0.5
Preprocessing took 6 seconds
Step 2: aligning atlas to reference segmentation
Traceback (most recent call last):
File "/Applications/freesurfer/7.3.2//python/scripts/segment_subregions", line 99, in <module>
subregions.run_cross_sectional(args.structure, parameters)
File "/Applications/freesurfer/7.3.2/python/packages/freesurfer/subregions/process.py", line 52, in run_cross_sectional
model.align_atlas_to_seg()
File "/Applications/freesurfer/7.3.2/python/packages/freesurfer/subregions/core.py", line 240, in align_atlas_to_seg
mask = mask.resize(1, interp='nearest')
TypeError: resize() got an unexpected keyword argument 'interp'
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