External Email - Use Caution        

Hello,

I am attempting to run mris_preproc with a single subject using the following command:

mris_preproc --s 6026423 --fwhm 10 --SUBJECTS_DIR /lab-share/Psych-Glahn-e2/Public/UKB_4844/FS_MRI --target fsaverage5 --hemi lh --meas thickness --out /lab-share/Psych-Glahn-e2/Public/UKB_4844/FS_analysis/PRS_reg/THICK/${s}.fs5.10mm.lh.thick.mgh

 Although I have copied the fsaverage5 directory to my SUBJECTS_DIR, I am getting the following error:

mri_surf2surf: could not read surface /lab-share/Psych-Glahn-e2/Public/UKB_4844/FS_MRI/6026423/surf/lh.fsaverage5.sphere.reg
No such file or directory

What's strange is that I tried the same command, but instead of using the fsaverage5, I used the  fsaverage (which is also located in my SUBJECTS_DIR) and it works fine.

I've attached both the log files when using the fsaverage and when using the fsaverag5. Am I missing something obvious? 

Any input is appreciated,

Amanda

--

Amanda Rodrigue, PhD

Boston Children's Hospital
Harvard Medical School
1 Autumn St.
Boston, MA 02215

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer