Dear Freesurfer group,

I was running recon-all (Freesurfer 7.2 on Ubuntu) and received the following error:

 

 mris_fix_topology -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 UC07 rh

 

Waiting for PID 6337 of (6337 6340) to complete...

Waiting for PID 6340 of (6337 6340) to complete...

/home/basuia/Documents/mmvt_root/freesurfer/bin/reconbatchjobs: line 77:  6340 Segmentation fault      (core dumped) exec $JOB >> $LOG 2>&1

PIDs (6337 6340) completed and logs appended.

 

Please find the log file attached.

Any idea what is the problem?

 

Thanks,

Noam