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Hello,

I have run through dt_recon and want to use anatomically based segmentations (aseg) to create ROIs for the diffusion-weighted data using mri_vol2vol.

I ran 

mri_vol2vol --mov $subj_dir/dtrecon/${subj}.${cond}./lowb.nii.gz --targ $subj_dir/diffusion_recons/${subj}.${cond}/mri/aparc+aseg.mgz --inv --interp nearest --o $subj_dir/dtrecon/${subj}.${cond}./aparc+aseg2diff.nii.gz --reg $subj_dir/dtrecon/${subj}.${cond}./register.dat --no-save-reg

Which worked.

I now want to quality check and make sure the ROIs I make from the aseg2diff segmentation is accurately aligned in diffusion space (such as making sure the hippocampal ROIs for aseg are actually going to overlay the hippocampal region of the diffusion data). My question is what is the best way to quality check for quality registration between the diffusion and anatomical data?

Best,

Daniel Callow

PhD Student, Neuroscience and Cognitive Science

Exercise for Brain Health Lab

University of Maryland, College Park

dcallow@umd.edu

443-254-6298

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