Hi Bruce,

I was using the original T1's in the mri_convert - perhaps I should be using the ac-pc aligned or talairach T1's? I do have a talairach.HEAD file and both acpc.BRIK and acpc.HEAD files. Should I use these instead of the originals?

Sorry for any confusion,

Jesse

On Sun, Nov 29, 2009 at 11:35 AM, Jesse Bledsoe <bledsoej@msu.edu> wrote:
Hi Bruce,

No. How do I check the .xfm?

Thanks,

Jesse


On Sat, Nov 28, 2009 at 3:10 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Did you  check the talairach.xfm?



On Nov 28, 2009, at 2:16 PM, Jesse Bledsoe <bledsoej@msu.edu> wrote:

Hello Experts,

I am getting the following error:

mri_watershed Error:
 GLOBAL region of the brain empty !
Linux circ.psy.msu.edu 2.6.9-67.0.4.ELsmp #1 SMP Fri Jan 18 05:00:58 EST 2008 i686 i686 i386 GNU/Linux

recon-all exited with ERRORS at Sat Nov 28 13:29:41 EST 2009

I do not seem to be getting this error with the other files.

Any suggestions?

Thanks so  much,

Jesse


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--
Jesse Bledsoe, M.A.
Clinical Psychology
Assistant Director, Center for Neurodevelopmental Study
Department of Psychiatry
Michigan State University
321 W. Fee Hall
East Lansing, MI 48824
______________________________________

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--
Jesse Bledsoe, M.A.
Clinical Psychology
Assistant Director, Center for Neurodevelopmental Study
Department of Psychiatry
Michigan State University
321 W. Fee Hall
East Lansing, MI 48824
______________________________________

Note: Information contained in this electronic message and any attachments to this message are intended for the exclusive use of the addressee(s) and may contain proprietary, confidential or privileged information. If you are not the intended recipient, you should not disseminate, distribute or copy this e-mail. Please notify the sender immediately and destroy all copies of this message and any attachments.