Dear Bruce and Freesurfer,
Yes, that is what I am saying! This what appears in the commandprompt when running the command:
input cache.th13.abs.sig.cluster.mgh
frame 0
nErode3d 0
nErode2d 0
output thresholded.mgh
Binarizing based on threshold
min 1.3
max +infinity
binval 1
binvalnot 0
Found 12485 values in range
Counting number of voxels
Found 12485 voxels in final mask
mri_binarize done
Yet nothing is visible when I open the thresholded surface in tksurfer.
previous:
what was the command line and screen output of the binarization? And are
you saying that pre-binarization you have locations that are above
threshold, but they are set to 0 anyway?