Yes,I want to compute them in standard space.But I don't know which atlas I should use?


> -----原始邮件-----
> 发件人: "Tim Schäfer" <ts+ml@rcmd.org>
> 发送时间: 2021-10-08 15:27:32 (星期五)
> 收件人: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
> 抄送:
> 主题: Re: [Freesurfer] Confusion about mean CT measures after registration
>
>         External Email - Use Caution        
>
> Oh sorry, ignore my last mail, I misread your question. aparcstats2table will compute the values for native space, and if I interpret your email correctly, you want them in standard space.
>
> Sorry for the confusion,
>
> Tim
>
> > On 10/08/2021 8:28 AM Dongyue Zhou <zhoudongyue@mail.dlut.edu.cn> wrote:
> >
> >  
> > External Email - Use Caution        
> >
> > Dear FreeSurfer experts:
> >
> >    I use the command recon-all qcache to get filesub_01/surf/lh.thickness.fwhm10.fsaverage.mgh file.
> >
> > I want to know mean CT measures of every ROI after registraion in one subject. And I know mean CT is calculated by dividing CT of all vertices by the number of vertices.
> >
> > Can I use fsaverage/label/?.annot as atlas to calculate mean cortical thickness of every ROI directly?
> >
> > Or should I transfer sub_01/label/?.annot to fsaverage ?
> >
> >
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