Hi Jon

can you include your entire command line so we can see it?

thanks
Bruce

On Mon, 3 Feb 2014, Jonathan Holt wrote:

Bruce,
I tried again on a set of different subjects, it error'd out once again. I
have write permission, this is the same directory I've been using for quite
some time, and I am positive there is space on the drive.

These are the last 50 or so lines of the output before it stops:

mghWrite(/net/data4/ALSSCI/FreeSurfer201211/FreeSurfer/LONG_STUDY_2/average
/tmp/make_average_vol-tmp-28460/orig-s_090803sk.long.SKtemplate/.mgh, -1):
could not open file
---------------------------------
Applying LTAtransformInterp (resample_type 1)
writing to/net/data4/ALSSCI/FreeSurfer201211/FreeSurfer/LONG_STUDY_2/average/tmp/make
_average_vol-tmp-28460/orig-s_090803sk.long.SKtemplate/.mgh...
ERROR: failure writing/net/data4/ALSSCI/FreeSurfer201211/FreeSurfer/LONG_STUDY_2/average/tmp/make
_average_vol-tmp-28460/orig-s_090803sk.long.SKtemplate/.mgh
/net/data4/ALSSCI/FreeSurfer201211/FreeSurfer/LONG_STUDY_2


I'm confused as to why it's looking for a nameless .mgh file, or perhaps
that is normal. This is my first usage for make_average_subject.

Jon


On Sat, Feb 1, 2014 at 5:54 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
wrote:
      Hi Jon

      usually that means that either the partition is full or you
      don't have permission. If that's not the case you will need to
      give us more details
      Bruce
      On Sat, 1 Feb 2014, Jonathan Holt wrote:

      Hello FS experts,

      I’m trying to make an average subject and I had an
      unfortunate error during the mri_convert stage,
      specifically an mghWrite error. I failed to save the
      output so I cannot recall the exact details, are there any
      specific things I should be looking out for to prevent
      this?

      best,

      Jon
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