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Hi Fateme,

Unfortunately, `-bigventricles` isn't supported on the infant recon stream, that's a feature of the samseg stream.

-Paul

On Fri, Feb 4, 2022 at 1:58 PM Fateme Sadat Haghpanah <fh2382@columbia.edu> wrote:
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Dear FreeSurfer Developers,

I am trying to use the InfantFS segmentation pipeline for segmenting images with Ventriculomegaly. I have looked up the archive and found out the -bigventricles. I have tried the following commands but it did not work. Can you help me to figure out how I can segment these images with infantFS?

infant_recon_all -bigventricles --newborn --s  ${SUBJ} —> ERROR: Flag -bigventricles unrecognized

Regards,
Fateme

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