Message: 3
    Date: Tue, 2 Feb 2016 14:17:02 -0500
    From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
    Subject: Re: [Freesurfer] mritotal failed - help with manual
            registration    (Bruce Fischl)
    To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
    Message-ID: <E8AA9D81-BB67-446A-BDD8-2000A5AAC28B@nmr.mgh.harvard.edu>
    Content-Type: text/plain; charset="us-ascii"
    Hi Will
    There was no attachment
    Bruce
    > On Feb 2, 2016, at 3:27 AM, will brown <willbrown1987@gmail.com> wrote:
    >
    > Hi Bruce,
    >
    > I've attached a shot of the misalignment as seen in freeview.
    >
    > Yes the original images were DICOM created in Siemens machine T1, 0.8
    slice thickness, can provide all DICOM tags if needed.
    >

- Ignored:
    > Thanks,
    >
    > Will
    >
    >
    > On Tue, Jan 26, 2016 at 6:00 AM, <freesurfer-request@nmr.mgh.harvard.edu>
    wrote:
    >
    > 
    > Message: 1
    > Date: Sun, 24 Jan 2016 18:58:54 -0500 (EST)
    > From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
    > Subject: Re: [Freesurfer] mritotal failed - help with manual
    >         registration
    > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
    > Message-ID:
    >         <alpine.LRH.2.20.1601241858240.29174@door.nmr.mgh.harvard.edu>
    > Content-Type: text/plain; charset=US-ASCII; format=flowed
    >
    > Hi Will
    >
    > can you take the same images with freeview and send them along? Also:
    > tell us a bit about your images. What format did they start in? Were they
    > dicoms?
    >
    > Bruce
    >
    > On Mon, 25 Jan 2016, will brown wrote:
    >
    > > Hi all,
    > > After attempting recon-all I received the error "mritotal failed, see
    > > transforms/talairach.log" etc which I understand may have something to
    do
    > > with bad output from registration. I've checked orig.mgz which does
    look out
    > > of line - the orientation is off so that it appears the subject has
    their
    > > head tilted off to one side (see Image1.jpg).
    > >
    > > I have tried to fix this manually with the help of this tutorial:
    > >
    > > http://freesurfer.net/fswiki/FsTutorial/Talairach_freeview
    > >
    > > Hovever, the "movable" blurry image that I'm trying to line up with my
    > > subjects image does not match the coronal, sagittal or horizontal views,
    > > e.g. when I click "coronal" my subject is displayed correctly but the
    > > movable image is displayed horizontally (see Image2.jpg and Image3.jpg).
    > >
    > > Am I missing something obvious? (and am I even on the right track given
    this
    > > error?)
    > >
    > > Thanks in advance for any help.
    > >
    > > Cheers,
    > > Will

- Done.



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---------- Forwarded message ----------
From: will brown <willbrown1987@gmail.com>
To: freesurfer-request@nmr.mgh.harvard.edu
Cc: 
Date: Thu, 4 Feb 2016 17:07:23 +1300
Subject: Re: mritotal failed - help with manual registration (Bruce Fischl) (Bruce Fischl)