Hello，Bruce

I attached my subjects. Please help me.

Thank you.

Abby

 2851A_T1_w4.nii

Bruce Fischl <fischl@nmr.mgh.harvard.edu> 于2019年4月18日周四 下午10:53写道：

Hi Abby

it's hard to tell from the image, but it looks like there is a big I/S
bias field as well as large amounts of pathology.

If you upload the subject to our ftp site we will take a look

cheers
Bruce
On Thu, 18 Apr
2019, Abby
tang wrote:

>
>         External Email - Use Caution        
>
> Hello FreeSurfer Developers,
>
> I'm attempting to recon_all my subjects which is .nii file. But I usually meet this error.
>
> CORRECTING DEFECT 0 (vertices=67, convex hull=73, v0=950)
> After retessellation of defect 0 (v0=950), euler #=20 (87340,255044,167724) : difference with theory
>  (-32) = -52
>
> CORRECTING DEFECT 1 (vertices=46367, convex hull=8524, v0=962)
> Segmentation fault (core dumped)
> Linux abby-virtual-machine 4.15.0-47-generic #50-Ubuntu SMP Wed Mar 13 10:44:52 UTC 2019 x86_64 x86_
> 64 x86_64 GNU/Linux
>
> recon-all -s 2851A_T1_w4 exited with ERRORS at Thu Apr 18 20:25:16 CST 2019
>
> To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>
> I check files in blow command and attached picture.
>
> freeview -v 2851A_T1_w4/mri/norm.mgz -f 2851A_T1_w4/surf/lh.orig.nofix 2851A_T1_w4/surf/lh.inflated.
> nofix
>
> almost all of subjects go wrong. I need your help.
>
> please give some advises with program statements in detail.
>
> I really appreciate your help
>
> 1) FreeSurfer version: freesurfer-linux-centos7_x86_64-dev.tar.gz
> 2) Platform: ubuntu 18
> 3) recon-all.log:see attached
>
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