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We are getting an error running the –localGI utility on a subject. The screen output is below and the output recon-all log file is attached.
Any help would be appreciated.
Jim
.
.
lGI for vertex number 4101 of the outer mesh is 1.4993
lGI for vertex number 4201 of the outer mesh is 0.6245
lGI for vertex number 4301 of the outer mesh is 0.97077
lGI for vertex number 4401 of the outer mesh is 1.5549
lGI for vertex number 4501 of the outer mesh is 0.57803
lGI for vertex number 4601 of the outer mesh is 5.1163.
... remeasuring lGI value for vertex iV = 4701. It may take a few minutes.
WARNING -- Problem for vertex iV = 4701, lGI value is aberrantly high (lGI=23.2391)...
...lGI computation will be stopped. This may be caused by topological defects, check mris_euler_number on the pial surface.
ERROR: compute_lgi did not create output file '/data/shimony/shimony2/neonatal/MOD1467_V1_a/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc' !
Linux linux1 3.10.0-514.10.2.el7.x86_64 #1 SMP Fri Mar 3 00:04:05 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s MOD1467_V1_a exited with ERRORS at Tue Aug 4 11:11:15 CDT 2020
For more details, see the log file /data/shimony/shimony2/neonatal/MOD1467_V1_a/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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