Hi Bruce,

Thank you for your reply.

The aseg seems to be okay:

https://www.dropbox.com/s/j1ac0ftxw8iiv34/Putamen.png?dl=0

Do you have any other suggestions?

Here is an extra image of the cortical ribbon. Maybe this helps:

https://www.dropbox.com/s/ycav96v91e4ncbg/Cortex.png?dl=0

Thanks!

- Vincent

On Mon, 03 Jul 2017, Bruce Fischl wrote:

Hi Vincent

the putamen error probably means that the aseg is wrong, and if so, you can correct the aseg and rerun autorecon2-wm and autorecon3 I believe.

For the medial ttemporal lobe issue is that really cortex? I can't really tell from the single coronal slice. I'll cc Jean Augustinack to see if she has an opinion.

cheers
Bruce

On Fri, 30 Jun 2017, Vincent Koppelmans wrote:

Hi all,

I was wondering how to fix the following issues:
1) The cortical ribbon extends into the gray matter of the putamen (see the top 
row of the attached image).

2) Cortical gray matter is missing in the medial temporal lobes (see the bottom 
row of the attached image).

I can’t find solutions for these particular issues under 
https://surfer.nmr.mgh.harvard.edu/fswiki/Edits 
<https://surfer.nmr.mgh.harvard.edu/fswiki/Edits>

How should I approach this? Suggestions are very much welcome.

Thank you!

- Vincent