Are you running this on a shared computer where other jobs might be using a lot of the available memory?

You can use the following command to check the amount of available RAM on your system:
free -h
Best,
Avnish
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of stdp82@virgilio.it <stdp82@virgilio.it>
Sent: Sunday, February 12, 2023 3:10 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] ScLimbic: error: could not allocate memory for slice 1 out of 256error: mri_convert --conform failed!
 

        External Email - Use Caution        

Hi list, the error is reported below.

Of note I have just runned, with success, ScLimbic for another study.

Thus, I do not understand which is the issue for this one.

Thanks

Stefano


mri_sclimbic_seg --i FOLDER --o FOLDER --write_volumes --write_qa_stats --etiv --conform

/Applications/freesurfer/7.3.2/sclimbic/python/scripts/mri_sclimbic_seg --i FOLDER --o FOLDER --write_volumes --write_qa_stats --etiv --conform

Excluding seg [853]Using CPUUsing 1 thread(s)Loaded lookup table /Applications/freesurfer/7.3.2/sclimbic/models/sclimbic.ctab

Loaded population stats /Applications/freesurfer/7.3.2/sclimbic/models/sclimbic.volstats.csv

Loaded model weights /Applications/freesurfer/7.3.2/sclimbic/models/sclimbic.fsm+ad.t1.nstd00-50.nstd32-50.h5

Computing etiv from scratchmri_convert --conform FOLDER/subjID.mgz /var/folders/vd/g4zth0dn6nldcx62m0l827sr0000gn/T/tmpk6kr248m/nu.mgz reading from FOLDER/subjID.mgz...error: could not allocate memory for slice 1 out of 256error: mri_convert --conform failed!