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Hi Freesurfers, 

I am trying to run tracula and was running the command bedpostx_datacheck and the terminal said: 

-------- freesurfer-darwin-macOS-7.3.2-20220804-6354275 --------

Setting up environment for FreeSurfer/FS-FAST (and FSL)

FREESURFER_HOME   /Applications/freesurfer/7.3.2

FSFAST_HOME       /Applications/freesurfer/7.3.2/fsfast

FSF_OUTPUT_FORMAT nii.gz

SUBJECTS_DIR      /Applications/freesurfer/7.3.2/subjects

MNI_DIR           /Applications/freesurfer/7.3.2/mni

SLE-PBS-h4tkn18vq6x3:~ timothydurazzo$ bedpostx_datacheck

-bash: bedpostx_datacheck: command not found

SLE-PBS-h4tkn18vq6x3:~ timothydurazzo$ 


I see that FSL (FSL_DIR) is not in the freesurfer environment at the top, how can we add that in order to get bedpostx_datacheck to run properly? 

Thank you, 

Lauren Stephens, MS 

Assistant Clinical Research Coordinator 

Department of Psychiatry and Behavioral Science 

Stanford University School of Medicine  

E: laurenss@stanford.edu 

P: (650)-725-1716