Hello,<br><br>I am running the reconall steps individually for a firts try.<br><br>I noticed that I get a segmentation fault when I run mris_anatomical_stats as whown below:<br><br>[jdrozd@trumpet mri]$ mris_anatomical_stats -mgz -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -cf ../label/aparc.annot.ctab convertedfile lh                          <br>
INFO: assuming MGZ format for volumes.                                                   <br>computing statistics for each annotation in ../label/lh.aparc.annot.<br>reading volume /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/mri/wm.mgz...<br>
reading input surface /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.white...<br>reading input pial surface /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.pial...<br>
reading input white surface /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.white...<br>reading colortable from annotation file...<br>colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt)<br>
Saving annotation colortable ../label/aparc.annot.ctab<br><br>table columns are:<br>    number of vertices<br>    total surface area (mm^2)<br>    total gray matter volume (mm^3)<br>    average cortical thickness +- standard deviation (mm)<br>
    integrated rectified mean curvature<br>    integrated rectified Gaussian curvature<br>    folding index<br>    intrinsic curvature index<br>    structure name<br><br>Segmentation fault<br><br>john<br>