Hi,

What does your aseg.mgz look like?

Jenni

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From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of deepa preeti
Sent: Monday, April 02, 2007 9:31 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] How to edit orig surface?

Hi,

I am trying to do cortical segmentation. But unfortunately during autorecon2 stage, in some of the scans  the orig surface did not include some of the wm, even though these regions are included in wm.mgz and so, the pial surface failed to include them as well.

How to edit in this case? ( because this region is already there in wm.mgz ).

I have attached the brainmask & wm.mgz.

Any suggestions greatly appreciated.

Thanks,
Preeti Ramasamy.