#-------------------------------------------- #@# Segmentation of brainstem substructures Wed May 11 17:07:14 CEST 2016 ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is .:/data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/MCRv80/runtime/glnxa64:/data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/MCRv80/bin/glnxa64:/data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/MCRv80/sys/os/glnxa64:/data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/server:/data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/client:/data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/sys/opengl/lib/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/sys/os/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/bin/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/extern/lib/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/runtime/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/indirect/data1/vbeliveau/software/MATLAB/R2014b/sys/java/jre/glnxa64/jre/lib/amd64/server:/indirect/data1/vbeliveau/software/MATLAB/R2014b/sys/opengl/lib/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/sys/os/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/bin/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/extern/lib/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/runtime/glnxa64:/indirect/data1/vbeliveau/software/MATLAB/R2014b/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/indirect/data1/vbeliveau/software/MATLAB/R2014b/sys/java/jre/glnxa64/jre/lib/amd64/server:/opt/thinlinc/lib64:/opt/thinlinc/lib:/usr/local/nru/freesurfer/lib:/usr/local/nru/freesurfer/lib:/usr/local/nru/freesurfer/lib Registering imageDump.mgz to BS mask from ASEG fixedImageFileName: imageDump.mgz movingImageFileName: /indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz degreesOfFreedom: 3 numberOfBins: 20 useDefaultSchedule: 1 initialTranslationMode: 2 extraInputImageFileNames: Initializing the parameters as follows: [0, -0, 0, -76.064, -60.8098, -59.7584, 1, 1, 1, 0, 0, 0] Using fixedShrinkFactors: [1, 1, 1] Shrinking fixed image: 0% 0.999774% 1.99955% 2.99932% 3.9991% 4.99887% 5.99865% 6.99842% 7.9982% 8.99797% 9.99774% 10.9975% 11.9973% 12.9971% 13.9968% 14.9966% 15.9964% 16.9962% 17.9959% 18.9957% 19.9955% 20.9953% 21.995% 22.9948% 23.9946% 24.9944% 25.9941% 26.9939% 27.9937% 28.9935% 29.9932% 30.993% 31.9928% 32.9926% 33.9923% 34.9921% 35.9919% 36.9917% 37.9914% 38.9912% 39.991% 40.9908% 41.9905% 42.9903% 43.9901% 44.9898% 45.9896% 46.9894% 47.9892% 48.9889% 49.9887% 50.9885% 51.9883% 52.988% 53.9878% 54.9876% 55.9874% 56.9871% 57.9869% 58.9867% 59.9865% 60.9862% 61.986% 62.9858% 63.9856% 64.9853% 65.9851% 66.9849% 67.9847% 68.9844% 69.9842% 70.984% 71.9838% 72.9835% 73.9833% 74.9831% 75.9829% 76.9826% 77.9824% 78.9822% 79.982% 80.9817% 81.9815% 82.9813% 83.981% 84.9808% 85.9806% 86.9804% 87.9801% 88.9799% 89.9797% 90.9795% 91.9792% 92.979% 93.9788% 94.9786% 95.9783% 96.9781% 97.9779% 98.9777% 99.9774% 100% 100% Using movingShrinkFactors: [1, 1, 1] Shrinking moving image: 0% 0.999583% 1.99917% 2.99875% 3.99833% 4.99792% 5.9975% 6.99708% 7.99667% 8.99625% 9.99584% 10.9954% 11.995% 12.9946% 13.9942% 14.9938% 15.9933% 16.9929% 17.9925% 18.9921% 19.9917% 20.9913% 21.9908% 22.9904% 23.99% 24.9896% 25.9892% 26.9888% 27.9883% 28.9879% 29.9875% 30.9871% 31.9867% 32.9863% 33.9858% 34.9854% 35.985% 36.9846% 37.9842% 38.9838% 39.9833% 40.9829% 41.9825% 42.9821% 43.9817% 44.9813% 45.9808% 46.9804% 47.98% 48.9796% 49.9792% 50.9788% 51.9783% 52.9779% 53.9775% 54.9771% 55.9767% 56.9763% 57.9758% 58.9754% 59.975% 60.9746% 61.9742% 62.9738% 63.9733% 64.9729% 65.9725% 66.9721% 67.9717% 68.9713% 69.9708% 70.9704% 71.97% 72.9696% 73.9692% 74.9688% 75.9683% 76.9679% 77.9675% 78.9671% 79.9667% 80.9663% 81.9658% 82.9654% 83.965% 84.9646% 85.9642% 86.9638% 87.9633% 88.9629% 89.9625% 90.9621% 91.9617% 92.9613% 93.9609% 94.9604% 95.96% 96.9596% 97.9592% 98.9588% 99.9584% 100% 100% Using fixedSchedule: [4, 4, 4] [1, 1, 1] Using movingSchedule: [4, 4, 4] [1, 1, 1] Using scales: [57.1429, 57.1429, 57.1429, 1, 1, 1, 100, 100, 100, 100, 100, 100] Using parameterOrder: [0, 0, 0, 1, 2, 3, 0, 0, 0, 0, 0, 0] Calculating fixed image pyramid: 0% 50% 100% Calculating moving image pyramid: 0% 50% 100% Doing registration at level 0 of 2 Iteration 0: value = -0.323945 Current position: Rotation: 0 -0 0 Translation: -76.064 -59.2758 -59.7584 Scaling: 1 1 1 Skewing: 0 0 0 PowellOptimizer: Cost function values at the current parameter (-0.323945) and at the local extrema (-0.323945) are within Value Tolerance (0) Doing registration at level 1 of 2 Iteration 0: value = -0.18222 Current position: Rotation: 0 -0 0 Translation: -75.9421 -58.9826 -59.1545 Scaling: 1 1 1 Skewing: 0 0 0 Iteration 1: value = -0.185095 Current position: Rotation: 0 -0 0 Translation: -75.9421 -58.7664 -59.1545 Scaling: 1 1 1 Skewing: 0 0 0 Iteration 2: value = -0.186673 Current position: Rotation: 0 -0 0 Translation: -75.9421 -58.807 -59.1545 Scaling: 1 1 1 Skewing: 0 0 0 PowellOptimizer: Cost function values at the current parameter (-0.186673) and at the local extrema (-0.186673) are within Value Tolerance (0) Wrote out imageDump_coregistered.mgz $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ --mov: Using imageDump.mgz as movable/source volume. --dst: Using /indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz as target volume. --lta: Output transform as trash.lta . --mapmovhdr: Will save header adjusted movable as imageDump_coregistered.mgz ! --sat: Using saturation 50 in M-estimator! reading source 'imageDump.mgz'... reading target '/indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz'... Registration::setSourceAndTarget(MRI s, MRI t, keeptype = TRUE ) Type Source : 4 Type Target : 4 keeping type Reordering axes in mov to better fit dst... ( -1 3 -2 ) MRIreorder() ----------- xdim=-1 ydim=3 zdim=-2 src 65 55 93, 1.000000 1.000000 1.000000 dst 65 93 55, 1.000000 1.000000 1.000000 Determinant after swap : 1 Mov: (1, 1, 1)mm and dim (65, 93, 55) Dst: (1, 1, 1)mm and dim (49, 80, 49) Asserting both images: 1mm isotropic - no Mov reslice necessary - reslicing Dst ... -- Original : (1, 1, 1)mm and (49, 80, 49) voxels. -- Resampled: (1, 1, 1)mm and (65, 93, 55) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 Registration::computeMultiresRegistration - computing centroids - computing initial transform -- using translation info - Get Gaussian Pyramid Limits ( min size: 16 max size: -1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - initial transform: Ti = [ ... 1.0000000000000 0 0 0.5998304892573 0 1.0000000000000 0 -0.1983054390413 0 0 1.0000000000000 -0.2230906603022 0 0 0 1.0000000000000 ] - initial iscale: Ii =1 Resolution: 1 S( 32 46 27 ) T( 32 46 27 ) Iteration(f): 1 /data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/bin//mri_robust_register: line 3: 36835 Segmentation fault mri_robust_register.bin "$@" /data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/bin//mri_robust_register --mov imageDump.mgz --dst /indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz -lta trash.lta --mapmovhdr imageDump_coregistered.mgz --sat 50: Segmentation fault mv: cannot stat ���imageDump_coregistered.mgz���: No such file or directory $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ --mov: Using imageDump.mgz as movable/source volume. --dst: Using /indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz as target volume. --lta: Output transform as trash.lta . --mapmovhdr: Will save header adjusted movable as imageDump_coregistered.mgz ! --affine: Enableing affine transform! --sat: Using saturation 50 in M-estimator! reading source 'imageDump.mgz'... reading target '/indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz'... Registration::setSourceAndTarget(MRI s, MRI t, keeptype = TRUE ) Type Source : 4 Type Target : 4 keeping type Reordering axes in mov to better fit dst... ( -1 3 -2 ) MRIreorder() ----------- xdim=-1 ydim=3 zdim=-2 src 65 55 93, 1.000000 1.000000 1.000000 dst 65 93 55, 1.000000 1.000000 1.000000 Determinant after swap : 1 Mov: (1, 1, 1)mm and dim (65, 93, 55) Dst: (1, 1, 1)mm and dim (49, 80, 49) Asserting both images: 1mm isotropic - no Mov reslice necessary - reslicing Dst ... -- Original : (1, 1, 1)mm and (49, 80, 49) voxels. -- Resampled: (1, 1, 1)mm and (65, 93, 55) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 Registration::computeMultiresRegistration - computing centroids - computing initial transform -- using translation info - Get Gaussian Pyramid Limits ( min size: 16 max size: -1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - initial transform: Ti = [ ... 1.0000000000000 0 0 0.5998304892573 0 1.0000000000000 0 -0.1983054390413 0 0 1.0000000000000 -0.2230906603022 0 0 0 1.0000000000000 ] - initial iscale: Ii =1 Resolution: 1 S( 32 46 27 ) T( 32 46 27 ) Iteration(f): 1 /data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/bin//mri_robust_register: line 3: 36841 Segmentation fault mri_robust_register.bin "$@" /data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/bin//mri_robust_register --mov imageDump.mgz --dst /indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz -lta trash.lta --mapmovhdr imageDump_coregistered.mgz --affine --sat 50: Segmentation fault mv: cannot stat ���imageDump_coregistered.mgz���: No such file or directory Reading contexts of file /data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/average/BrainstemSS/atlas/compressionLookupTable.txt Constructing image-to-world transform from header information (cheating.mgz) Returning the following transform: AffineTransform (0x7fabc4a31c80) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 401 Debug: Off Observers: none Matrix: -1 6.70552e-08 -5.58794e-08 -1.86265e-08 -5.58794e-09 1 -3.72529e-08 -1 -2.79397e-09 Offset: [129.537, -74.5787, 120.554] Center: [0, 0, 0] Translation: [129.537, -74.5787, 120.554] Inverse: -1 -5.58793e-08 -6.70552e-08 3.72529e-08 -2.79397e-09 -1 -1.86264e-08 1 -5.58794e-09 Singular: 0 Constructing image-to-world transform from header information (/indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based/imageDump.mgz) Returning the following transform: AffineTransform (0x7fabc4a31c80) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 552 Debug: Off Observers: none Matrix: 1 0 0 0 1 0 0 0 1 Offset: [-28.9421, 4.19297, -59.1545] Center: [0, 0, 0] Translation: [-28.9421, 4.19297, -59.1545] Inverse: 1 0 0 0 1 0 0 0 1 Singular: 0 Transform before cropping: AffineTransform (0x7fabc4a31c80) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 554 Debug: Off Observers: none Matrix: -1 -5.58793e-08 -6.70552e-08 3.72529e-08 -2.79397e-09 -1 -1.86264e-08 1 -5.58794e-09 Offset: [158.48, 179.708, 78.7717] Center: [0, 0, 0] Translation: [158.48, 179.708, 78.7717] Inverse: -1 6.70552e-08 -5.58794e-08 -1.86265e-08 -5.58794e-09 1 -3.72529e-08 -1 -2.79397e-09 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7fabc4407ce0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 556 Debug: Off Observers: none Matrix: -1 -5.58793e-08 -6.70552e-08 3.72529e-08 -2.79397e-09 -1 -1.86264e-08 1 -5.58794e-09 Offset: [129.537, 120.554, 74.5787] Center: [0, 0, 0] Translation: [129.537, 120.554, 74.5787] Inverse: -1 6.70552e-08 -5.58794e-08 -1.86265e-08 -5.58794e-09 1 -3.72529e-08 -1 -2.79397e-09 Singular: 0 m_BoundingBoxSize: [65, 55,93] minimalMappedCoordinate: [94.4795, 87.7081,78.7717] maximalMappedCoordinate: [158.48, 179.708,132.772] Cropping with min [88 78 73] and max [165 189 138] m_OriginalImageRegion before checking margins: ImageRegion (0x7fabc441a930) Dimension: 3 Index: [88, 78, 73] Size: [78, 112, 66] m_CroppedImageRegion before checking margins: ImageRegion (0x7fabc441a8f8) Dimension: 3 Index: [0, 0, 0] Size: [78, 112, 66] m_OriginalImageRegion after checking margins: ImageRegion (0x7fabc441a930) Dimension: 3 Index: [88, 78, 73] Size: [78, 112, 66] m_CroppedImageRegion after checking margins: ImageRegion (0x7fabc441a8f8) Dimension: 3 Index: [0, 0, 0] Size: [78, 112, 66] Transform after cropping: AffineTransform (0x7fabc4a31c80) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 708 Debug: Off Observers: none Matrix: -1 -5.58793e-08 -6.70552e-08 3.72529e-08 -2.79397e-09 -1 -1.86264e-08 1 -5.58794e-09 Offset: [70.4795, 101.708, 5.77169] Center: [0, 0, 0] Translation: [70.4795, 101.708, 5.77169] Inverse: -1 6.70552e-08 -5.58794e-08 -1.86265e-08 -5.58794e-09 1 -3.72529e-08 -1 -2.79397e-09 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7fabc4407ce0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 709 Debug: Off Observers: none Matrix: -1 -5.58793e-08 -6.70552e-08 3.72529e-08 -2.79397e-09 -1 -1.86264e-08 1 -5.58794e-09 Offset: [41.5374, 42.5535, 1.57872] Center: [0, 0, 0] Translation: [41.5374, 42.5535, 1.57872] Inverse: -1 6.70552e-08 -5.58794e-08 -1.86265e-08 -5.58794e-09 1 -3.72529e-08 -1 -2.79397e-09 Singular: 0 Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Warning: This concatenation operation includes an empty array with an incorrect number of rows. Concatenation including empty arrays will require all arrays to have the same number of rows in a future release. [> In segmentSubject at 209] Reading contexts of file /data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/average/BrainstemSS/atlas/compressionLookupTable.txt -------------- Making Left-VentralDC map to reduced label 1 Making 4th-Ventricle map to reduced label 1 Making Left-Cerebellum-White-Matter map to reduced label 1 Making Left-Cerebellum-Cortex map to reduced label 1 Making Medulla map to reduced label 1 Making Pons map to reduced label 1 Making SCP map to reduced label 1 Making Midbrain map to reduced label 1 -------------- Making Left-Caudate map to reduced label 2 Making Left-Accumbens-area map to reduced label 2 Making Left-Pallidum map to reduced label 2 Making 3rd-Ventricle map to reduced label 2 Making Left-Putamen map to reduced label 2 Making Left-Thalamus-Proper map to reduced label 2 Making Left-Amygdala map to reduced label 2 Making Left-Lateral-Ventricle map to reduced label 2 Making Left-choroid-plexus map to reduced label 2 Making Left-Hippocampus map to reduced label 2 Making Left-Cerebral-White-Matter map to reduced label 2 Making Left-Cerebral-Cortex map to reduced label 2 Making Background map to reduced label 2 Smoothing mesh with kernel size 3.000000 ...Smoothing class: 0 Smoothing class: 1 done numberOfImages = 1 Image: 4 numberOfClasses = 2 numberOfImages = 1 precisions[0][0][0] = 1.000000 precisions[0][0][1] = 1.000000 means[0][0] = 255.000000 means[0][1] = 1.000000 Iteration 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 0.50722 seconds minLogLikelihoodTimesPrior = 2.4732e+05 Iteration 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.83778 voxels in 0.38382 seconds minLogLikelihoodTimesPrior = 2.4547e+05 Iteration 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.92646 voxels in 0.35109 seconds minLogLikelihoodTimesPrior = 2.4384e+05 Iteration 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.2991 voxels in 0.2296 seconds minLogLikelihoodTimesPrior = 2.4173e+05 Iteration 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.10259 voxels in 0.43865 seconds minLogLikelihoodTimesPrior = 2.4163e+05 Iteration 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.035781 voxels in 0.24786 seconds minLogLikelihoodTimesPrior = 2.4151e+05 Iteration 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.063829 voxels in 0.25828 seconds minLogLikelihoodTimesPrior = 2.4143e+05 Iteration 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.034549 voxels in 0.23766 seconds minLogLikelihoodTimesPrior = 2.4129e+05 Iteration 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.042391 voxels in 0.26375 seconds minLogLikelihoodTimesPrior = 2.4118e+05 Iteration 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.12592 voxels in 0.2315 seconds minLogLikelihoodTimesPrior = 2.4105e+05 Iteration 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.19676 voxels in 0.23031 seconds minLogLikelihoodTimesPrior = 2.4091e+05 Iteration 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18794 voxels in 0.23666 seconds minLogLikelihoodTimesPrior = 2.4070e+05 Iteration 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24471 voxels in 0.23029 seconds minLogLikelihoodTimesPrior = 2.4035e+05 Iteration 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.26634 voxels in 0.23558 seconds minLogLikelihoodTimesPrior = 2.3969e+05 Iteration 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.65519 voxels in 0.23719 seconds minLogLikelihoodTimesPrior = 2.3845e+05 Iteration 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.46292 voxels in 0.26215 seconds minLogLikelihoodTimesPrior = 2.3737e+05 Iteration 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.35584 voxels in 0.26438 seconds minLogLikelihoodTimesPrior = 2.3638e+05 Iteration 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.51699 voxels in 0.36021 seconds minLogLikelihoodTimesPrior = 2.3556e+05 Iteration 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.68283 voxels in 0.31014 seconds minLogLikelihoodTimesPrior = 2.3405e+05 Iteration 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.57351 voxels in 0.23708 seconds minLogLikelihoodTimesPrior = 2.3278e+05 Iteration 21 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.50328 voxels in 0.24878 seconds minLogLikelihoodTimesPrior = 2.3183e+05 Iteration 22 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.35557 voxels in 0.38678 seconds minLogLikelihoodTimesPrior = 2.3105e+05 Iteration 23 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.41049 voxels in 0.23159 seconds minLogLikelihoodTimesPrior = 2.3075e+05 Iteration 24 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.48257 voxels in 0.22752 seconds minLogLikelihoodTimesPrior = 2.3022e+05 Iteration 25 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.34443 voxels in 0.39149 seconds minLogLikelihoodTimesPrior = 2.2978e+05 Iteration 26 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31422 voxels in 0.22102 seconds minLogLikelihoodTimesPrior = 2.2901e+05 Iteration 27 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.26875 voxels in 0.40051 seconds minLogLikelihoodTimesPrior = 2.2844e+05 Iteration 28 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.38969 voxels in 0.22865 seconds minLogLikelihoodTimesPrior = 2.2763e+05 Iteration 29 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.43987 voxels in 0.31876 seconds minLogLikelihoodTimesPrior = 2.2718e+05 Iteration 30 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.45904 voxels in 0.25 seconds minLogLikelihoodTimesPrior = 2.2670e+05 Iteration 31 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.43435 voxels in 0.2527 seconds minLogLikelihoodTimesPrior = 2.2624e+05 Iteration 32 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1398 voxels in 0.72227 seconds minLogLikelihoodTimesPrior = 2.2607e+05 Iteration 33 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21834 voxels in 0.22758 seconds minLogLikelihoodTimesPrior = 2.2579e+05 Iteration 34 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.45361 voxels in 0.39381 seconds minLogLikelihoodTimesPrior = 2.2556e+05 Iteration 35 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.26143 voxels in 0.32869 seconds minLogLikelihoodTimesPrior = 2.2540e+05 Iteration 36 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13696 voxels in 0.33493 seconds minLogLikelihoodTimesPrior = 2.2533e+05 Iteration 37 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11371 voxels in 0.21372 seconds minLogLikelihoodTimesPrior = 2.2523e+05 Iteration 38 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.048945 voxels in 0.221 seconds minLogLikelihoodTimesPrior = 2.2520e+05 Iteration 39 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.10125 voxels in 0.22598 seconds minLogLikelihoodTimesPrior = 2.2515e+05 Iteration 40 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.068664 voxels in 0.22687 seconds minLogLikelihoodTimesPrior = 2.2507e+05 Iteration 41 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11557 voxels in 0.21903 seconds minLogLikelihoodTimesPrior = 2.2492e+05 Iteration 42 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16692 voxels in 0.2226 seconds minLogLikelihoodTimesPrior = 2.2463e+05 Iteration 43 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.28937 voxels in 0.22395 seconds minLogLikelihoodTimesPrior = 2.2410e+05 Iteration 44 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.28213 voxels in 0.44039 seconds minLogLikelihoodTimesPrior = 2.2361e+05 Iteration 45 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.54696 voxels in 0.22257 seconds minLogLikelihoodTimesPrior = 2.2280e+05 Iteration 46 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.46236 voxels in 0.33372 seconds minLogLikelihoodTimesPrior = 2.2226e+05 Iteration 47 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29583 voxels in 0.3367 seconds minLogLikelihoodTimesPrior = 2.2189e+05 Iteration 48 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.12465 voxels in 0.44643 seconds minLogLikelihoodTimesPrior = 2.2185e+05 Iteration 49 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.058758 voxels in 0.21995 seconds minLogLikelihoodTimesPrior = 2.2183e+05 Iteration 50 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.12938 voxels in 0.22331 seconds minLogLikelihoodTimesPrior = 2.2179e+05 Iteration 51 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.056255 voxels in 0.52168 seconds minLogLikelihoodTimesPrior = 2.2177e+05 Iteration 52 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.066411 voxels in 0.22529 seconds minLogLikelihoodTimesPrior = 2.2174e+05 Iteration 53 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.097093 voxels in 0.22715 seconds minLogLikelihoodTimesPrior = 2.2171e+05 Iteration 54 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.2257 voxels in 0.22208 seconds minLogLikelihoodTimesPrior = 2.2166e+05 Iteration 55 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.081626 voxels in 0.40019 seconds minLogLikelihoodTimesPrior = 2.2161e+05 Iteration 56 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.19011 voxels in 0.21971 seconds minLogLikelihoodTimesPrior = 2.2152e+05 Iteration 57 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18204 voxels in 0.22838 seconds minLogLikelihoodTimesPrior = 2.2137e+05 Iteration 58 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29165 voxels in 0.22279 seconds minLogLikelihoodTimesPrior = 2.2110e+05 Iteration 59 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.37334 voxels in 0.26831 seconds minLogLikelihoodTimesPrior = 2.2069e+05 Iteration 60 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.60041 voxels in 0.24622 seconds minLogLikelihoodTimesPrior = 2.2013e+05 Iteration 61 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.72828 voxels in 0.23064 seconds minLogLikelihoodTimesPrior = 2.1971e+05 Iteration 62 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.49386 voxels in 0.22197 seconds minLogLikelihoodTimesPrior = 2.1957e+05 Iteration 63 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24377 voxels in 0.22414 seconds minLogLikelihoodTimesPrior = 2.1939e+05 Iteration 64 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.40964 voxels in 0.21738 seconds minLogLikelihoodTimesPrior = 2.1934e+05 Iteration 65 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.088916 voxels in 0.22378 seconds minLogLikelihoodTimesPrior = 2.1928e+05 Iteration 66 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.087371 voxels in 0.84877 seconds minLogLikelihoodTimesPrior = 2.1928e+05 Iteration 67 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00083984 voxels in 0.22367 seconds minLogLikelihoodTimesPrior = 2.1928e+05 Iteration 68 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00022581 voxels in 0.22406 seconds minLogLikelihoodTimesPrior = 2.1928e+05 Iteration 69 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0038809 voxels in 0.22684 seconds minLogLikelihoodTimesPrior = 2.1928e+05 Iteration 70 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00089826 voxels in 0.22664 seconds minLogLikelihoodTimesPrior = 2.1927e+05 Iteration 71 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0018647 voxels in 0.2183 seconds minLogLikelihoodTimesPrior = 2.1926e+05 Iteration 72 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.027727 voxels in 0.2201 seconds minLogLikelihoodTimesPrior = 2.1924e+05 Iteration 73 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0079113 voxels in 0.22323 seconds minLogLikelihoodTimesPrior = 2.1922e+05 Iteration 74 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.090686 voxels in 0.22359 seconds minLogLikelihoodTimesPrior = 2.1917e+05 Iteration 75 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.032525 voxels in 0.21645 seconds minLogLikelihoodTimesPrior = 2.1913e+05 Iteration 76 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.072017 voxels in 0.37596 seconds minLogLikelihoodTimesPrior = 2.1912e+05 Iteration 77 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.027012 voxels in 0.21972 seconds minLogLikelihoodTimesPrior = 2.1911e+05 Iteration 78 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.03553 voxels in 0.23578 seconds minLogLikelihoodTimesPrior = 2.1910e+05 Iteration 79 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.028011 voxels in 0.21963 seconds minLogLikelihoodTimesPrior = 2.1909e+05 Iteration 80 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.031643 voxels in 0.22015 seconds minLogLikelihoodTimesPrior = 2.1908e+05 Iteration 81 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.099785 voxels in 0.21473 seconds minLogLikelihoodTimesPrior = 2.1905e+05 Iteration 82 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.079535 voxels in 0.22099 seconds minLogLikelihoodTimesPrior = 2.1900e+05 Iteration 83 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.42893 voxels in 0.22058 seconds minLogLikelihoodTimesPrior = 2.1894e+05 Iteration 84 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21711 voxels in 0.22117 seconds minLogLikelihoodTimesPrior = 2.1885e+05 Iteration 85 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24762 voxels in 0.32578 seconds minLogLikelihoodTimesPrior = 2.1878e+05 Iteration 86 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.23903 voxels in 0.2163 seconds minLogLikelihoodTimesPrior = 2.1868e+05 Iteration 87 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16034 voxels in 0.32511 seconds minLogLikelihoodTimesPrior = 2.1860e+05 Iteration 88 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.19378 voxels in 0.22396 seconds minLogLikelihoodTimesPrior = 2.1849e+05 Iteration 89 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.38868 voxels in 0.22434 seconds minLogLikelihoodTimesPrior = 2.1835e+05 Iteration 90 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.28121 voxels in 0.27837 seconds minLogLikelihoodTimesPrior = 2.1829e+05 Iteration 91 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.10133 voxels in 0.44385 seconds minLogLikelihoodTimesPrior = 2.1826e+05 Iteration 92 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.024636 voxels in 1.0768 seconds minLogLikelihoodTimesPrior = 2.1826e+05 Iteration 93 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0028951 voxels in 0.2233 seconds minLogLikelihoodTimesPrior = 2.1826e+05 Iteration 94 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0027341 voxels in 0.22435 seconds minLogLikelihoodTimesPrior = 2.1825e+05 Iteration 95 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.01024 voxels in 0.22026 seconds minLogLikelihoodTimesPrior = 2.1825e+05 Iteration 96 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0092649 voxels in 0.22534 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 97 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0064087 voxels in 0.92075 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 98 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00018255 voxels in 0.21948 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 99 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0032804 voxels in 0.77669 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 100 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.6157e-05 voxels in 0.22402 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 101 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 3.0184e-05 voxels in 0.22037 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 102 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 9.5627e-05 voxels in 0.2262 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 103 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00012157 voxels in 0.22123 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 104 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00038028 voxels in 0.22636 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 105 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0004889 voxels in 0.23675 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 106 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.001509 voxels in 0.24549 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 107 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0019239 voxels in 0.23562 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 108 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0056727 voxels in 0.23947 seconds minLogLikelihoodTimesPrior = 2.1824e+05 Iteration 109 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0073205 voxels in 0.23603 seconds minLogLikelihoodTimesPrior = 2.1823e+05 Iteration 110 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.019968 voxels in 0.32516 seconds minLogLikelihoodTimesPrior = 2.1823e+05 Iteration 111 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.028586 voxels in 0.26691 seconds minLogLikelihoodTimesPrior = 2.1822e+05 Iteration 112 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.053229 voxels in 0.2384 seconds minLogLikelihoodTimesPrior = 2.1820e+05 Iteration 113 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11795 voxels in 0.23372 seconds minLogLikelihoodTimesPrior = 2.1818e+05 Iteration 114 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.090039 voxels in 0.23061 seconds minLogLikelihoodTimesPrior = 2.1814e+05 Iteration 115 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20724 voxels in 0.23374 seconds minLogLikelihoodTimesPrior = 2.1807e+05 Iteration 116 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.26159 voxels in 0.23997 seconds minLogLikelihoodTimesPrior = 2.1799e+05 Iteration 117 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.15914 voxels in 0.31872 seconds minLogLikelihoodTimesPrior = 2.1794e+05 Iteration 118 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14911 voxels in 0.2394 seconds minLogLikelihoodTimesPrior = 2.1791e+05 Iteration 119 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.15888 voxels in 0.23161 seconds minLogLikelihoodTimesPrior = 2.1786e+05 Iteration 120 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.41113 voxels in 0.24119 seconds minLogLikelihoodTimesPrior = 2.1783e+05 Iteration 121 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.065409 voxels in 0.57866 seconds minLogLikelihoodTimesPrior = 2.1782e+05 Iteration 122 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.033912 voxels in 0.2359 seconds minLogLikelihoodTimesPrior = 2.1782e+05 Iteration 123 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.037531 voxels in 0.45283 seconds minLogLikelihoodTimesPrior = 2.1782e+05 Iteration 124 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0024142 voxels in 0.23738 seconds minLogLikelihoodTimesPrior = 2.1782e+05 Iteration 125 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.018519 voxels in 0.23216 seconds minLogLikelihoodTimesPrior = 2.1782e+05 Iteration 126 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0036968 voxels in 0.23582 seconds minLogLikelihoodTimesPrior = 2.1781e+05 Iteration 127 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0097506 voxels in 0.23345 seconds minLogLikelihoodTimesPrior = 2.1781e+05 Iteration 128 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.021511 voxels in 0.23989 seconds minLogLikelihoodTimesPrior = 2.1780e+05 Iteration 129 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.026546 voxels in 0.23975 seconds minLogLikelihoodTimesPrior = 2.1780e+05 Iteration 130 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.07359 voxels in 0.2367 seconds minLogLikelihoodTimesPrior = 2.1778e+05 Iteration 131 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13008 voxels in 0.23566 seconds minLogLikelihoodTimesPrior = 2.1777e+05 Iteration 132 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13397 voxels in 0.23794 seconds minLogLikelihoodTimesPrior = 2.1775e+05 Iteration 133 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.22432 voxels in 0.23319 seconds minLogLikelihoodTimesPrior = 2.1774e+05 Iteration 134 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.043831 voxels in 0.23717 seconds minLogLikelihoodTimesPrior = 2.1773e+05 Iteration 135 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16157 voxels in 0.23564 seconds minLogLikelihoodTimesPrior = 2.1771e+05 Iteration 136 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.086762 voxels in 0.47176 seconds minLogLikelihoodTimesPrior = 2.1769e+05 Iteration 137 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13596 voxels in 0.23412 seconds minLogLikelihoodTimesPrior = 2.1767e+05 Iteration 138 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.076029 voxels in 0.24358 seconds minLogLikelihoodTimesPrior = 2.1761e+05 Iteration 139 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14426 voxels in 0.2363 seconds minLogLikelihoodTimesPrior = 2.1752e+05 Iteration 140 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.25967 voxels in 0.23797 seconds minLogLikelihoodTimesPrior = 2.1743e+05 Iteration 141 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.25296 voxels in 0.23598 seconds minLogLikelihoodTimesPrior = 2.1732e+05 Iteration 142 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.10031 voxels in 0.4832 seconds minLogLikelihoodTimesPrior = 2.1730e+05 Iteration 143 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.080737 voxels in 0.24105 seconds minLogLikelihoodTimesPrior = 2.1727e+05 Iteration 144 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.06605 voxels in 0.23559 seconds minLogLikelihoodTimesPrior = 2.1721e+05 Iteration 145 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.32442 voxels in 0.2512 seconds minLogLikelihoodTimesPrior = 2.1717e+05 Iteration 146 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11501 voxels in 0.47106 seconds minLogLikelihoodTimesPrior = 2.1715e+05 Iteration 147 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21944 voxels in 0.23445 seconds minLogLikelihoodTimesPrior = 2.1711e+05 Iteration 148 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.19321 voxels in 0.2377 seconds minLogLikelihoodTimesPrior = 2.1707e+05 Iteration 149 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11297 voxels in 0.35242 seconds minLogLikelihoodTimesPrior = 2.1703e+05 Iteration 150 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.2453 voxels in 0.23746 seconds minLogLikelihoodTimesPrior = 2.1701e+05 Iteration 151 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.029784 voxels in 0.50769 seconds minLogLikelihoodTimesPrior = 2.1701e+05 Iteration 152 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00014969 voxels in 0.23443 seconds minLogLikelihoodTimesPrior = 2.1701e+05 Iteration 153 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00018611 voxels in 0.23742 seconds minLogLikelihoodTimesPrior = 2.1701e+05 Iteration 154 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0015692 voxels in 0.23465 seconds minLogLikelihoodTimesPrior = 2.1700e+05 Iteration 155 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00070532 voxels in 0.24569 seconds minLogLikelihoodTimesPrior = 2.1700e+05 Iteration 156 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0014861 voxels in 0.23239 seconds minLogLikelihoodTimesPrior = 2.1700e+05 Iteration 157 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.011946 voxels in 0.23786 seconds minLogLikelihoodTimesPrior = 2.1700e+05 Iteration 158 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.004139 voxels in 0.23966 seconds minLogLikelihoodTimesPrior = 2.1699e+05 Iteration 159 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.011209 voxels in 0.25455 seconds minLogLikelihoodTimesPrior = 2.1698e+05 Iteration 160 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.070888 voxels in 0.23392 seconds minLogLikelihoodTimesPrior = 2.1697e+05 Iteration 161 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.020538 voxels in 0.24464 seconds minLogLikelihoodTimesPrior = 2.1697e+05 Iteration 162 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.05848 voxels in 0.23666 seconds minLogLikelihoodTimesPrior = 2.1696e+05 Iteration 163 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.043661 voxels in 0.23679 seconds minLogLikelihoodTimesPrior = 2.1695e+05 Iteration 164 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.10216 voxels in 0.23422 seconds minLogLikelihoodTimesPrior = 2.1693e+05 Iteration 165 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.095861 voxels in 0.2375 seconds minLogLikelihoodTimesPrior = 2.1690e+05 Iteration 166 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0886 voxels in 0.23418 seconds minLogLikelihoodTimesPrior = 2.1685e+05 Iteration 167 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11601 voxels in 0.38411 seconds minLogLikelihoodTimesPrior = 2.1681e+05 Iteration 168 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13341 voxels in 0.23614 seconds minLogLikelihoodTimesPrior = 2.1674e+05 Iteration 169 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.23867 voxels in 0.23897 seconds minLogLikelihoodTimesPrior = 2.1663e+05 Iteration 170 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31778 voxels in 0.23504 seconds minLogLikelihoodTimesPrior = 2.1647e+05 Iteration 171 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21369 voxels in 0.44782 seconds minLogLikelihoodTimesPrior = 2.1633e+05 Iteration 172 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.33254 voxels in 0.32538 seconds minLogLikelihoodTimesPrior = 2.1627e+05 Iteration 173 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.018564 voxels in 0.70626 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 174 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0062789 voxels in 0.24424 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 175 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.015743 voxels in 0.94584 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 176 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 7.8027e-05 voxels in 0.24431 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 177 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0043392 voxels in 0.24027 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 178 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00023931 voxels in 0.23573 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 179 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0035487 voxels in 0.94839 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 180 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 4.2078e-05 voxels in 0.24512 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 181 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 8.3833e-05 voxels in 0.24884 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 182 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00029565 voxels in 0.24363 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 183 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00026784 voxels in 0.23882 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 184 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00053602 voxels in 0.238 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 185 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0018502 voxels in 0.23766 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 186 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0019473 voxels in 0.23819 seconds minLogLikelihoodTimesPrior = 2.1626e+05 Iteration 187 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0043158 voxels in 0.24015 seconds minLogLikelihoodTimesPrior = 2.1625e+05 Iteration 188 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.013414 voxels in 0.23681 seconds minLogLikelihoodTimesPrior = 2.1625e+05 Iteration 189 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.010324 voxels in 0.24947 seconds minLogLikelihoodTimesPrior = 2.1625e+05 Iteration 190 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.030638 voxels in 0.24364 seconds minLogLikelihoodTimesPrior = 2.1624e+05 Iteration 191 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.039741 voxels in 0.24507 seconds minLogLikelihoodTimesPrior = 2.1623e+05 Iteration 192 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1203 voxels in 0.23657 seconds minLogLikelihoodTimesPrior = 2.1623e+05 Iteration 193 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.05156 voxels in 0.2425 seconds minLogLikelihoodTimesPrior = 2.1621e+05 Iteration 194 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.095281 voxels in 0.23493 seconds minLogLikelihoodTimesPrior = 2.1619e+05 Iteration 195 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11147 voxels in 0.24793 seconds minLogLikelihoodTimesPrior = 2.1615e+05 Iteration 196 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.15684 voxels in 0.23833 seconds minLogLikelihoodTimesPrior = 2.1611e+05 Iteration 197 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17875 voxels in 0.24577 seconds minLogLikelihoodTimesPrior = 2.1603e+05 Iteration 198 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1518 voxels in 0.31893 seconds minLogLikelihoodTimesPrior = 2.1597e+05 Iteration 199 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20218 voxels in 0.24203 seconds minLogLikelihoodTimesPrior = 2.1593e+05 Iteration 200 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14032 voxels in 0.24188 seconds minLogLikelihoodTimesPrior = 2.1589e+05 Fitting mesh to synthetic image from ASEG took 58.0053 seconds Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Constructing image-to-world transform from header information (T1resampled.mgz) Returning the following transform: AffineTransform (0x7faa645df070) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 30588994 Debug: Off Observers: none Matrix: -0.5 3.35276e-08 -2.79397e-08 -9.31322e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Offset: [47.7874, -3.57872, 34.5535] Center: [0, 0, 0] Translation: [47.7874, -3.57872, 34.5535] Inverse: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Singular: 0 Constructing image-to-world transform from header information (/indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based/imageDump.mgz) Returning the following transform: AffineTransform (0x7faa645df070) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 30591598 Debug: Off Observers: none Matrix: 1 0 0 0 1 0 0 0 1 Offset: [-28.9421, 4.19297, -59.1545] Center: [0, 0, 0] Translation: [-28.9421, 4.19297, -59.1545] Inverse: 1 0 0 0 1 0 0 0 1 Singular: 0 Transform before cropping: AffineTransform (0x7faa645df070) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 30591600 Debug: Off Observers: none Matrix: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Offset: [153.459, 187.416, 15.5434] Center: [0, 0, 0] Translation: [153.459, 187.416, 15.5434] Inverse: -0.5 3.35276e-08 -2.79397e-08 -9.31323e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7faa64331600) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 30591602 Debug: Off Observers: none Matrix: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Offset: [95.5748, 69.107, 7.15744] Center: [0, 0, 0] Translation: [95.5748, 69.107, 7.15744] Inverse: -0.5 3.35276e-08 -2.79397e-08 -9.31323e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Singular: 0 m_BoundingBoxSize: [65, 55,93] minimalMappedCoordinate: [25.4591, 3.4161,15.5434] maximalMappedCoordinate: [153.459, 187.416,123.543] Cropping with min [13 -15 5] and max [166 206 134] m_OriginalImageRegion before checking margins: ImageRegion (0x7fabc441a7d0) Dimension: 3 Index: [13, -15, 5] Size: [154, 222, 130] m_CroppedImageRegion before checking margins: ImageRegion (0x7fabc441a798) Dimension: 3 Index: [0, 0, 0] Size: [154, 222, 130] m_OriginalImageRegion after checking margins: ImageRegion (0x7fabc441a7d0) Dimension: 3 Index: [13, 0, 5] Size: [154, 196, 130] m_CroppedImageRegion after checking margins: ImageRegion (0x7fabc441a798) Dimension: 3 Index: [0, 15, 0] Size: [154, 196, 130] Transform after cropping: AffineTransform (0x7faa645df070) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 30594207 Debug: Off Observers: none Matrix: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Offset: [140.459, 202.416, 10.5434] Center: [0, 0, 0] Translation: [140.459, 202.416, 10.5434] Inverse: -0.5 3.35276e-08 -2.79397e-08 -9.31323e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7faa64331600) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 30594208 Debug: Off Observers: none Matrix: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Offset: [82.5748, 84.107, 2.15744] Center: [0, 0, 0] Translation: [82.5748, 84.107, 2.15744] Inverse: -0.5 3.35276e-08 -2.79397e-08 -9.31323e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Singular: 0 Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Warning: This concatenation operation includes an empty array with an incorrect number of rows. Concatenation including empty arrays will require all arrays to have the same number of rows in a future release. [> In segmentSubject at 527] Reading contexts of file /data1/vbeliveau/software/freesurfer-Linux-centos4_x86_64-dev-110516/average/BrainstemSS/atlas/compressionLookupTable.txt -------------- Making Left-VentralDC map to reduced label 1 Making Medulla map to reduced label 1 Making Pons map to reduced label 1 Making SCP map to reduced label 1 Making Midbrain map to reduced label 1 -------------- Making 3rd-Ventricle map to reduced label 2 Making Left-Lateral-Ventricle map to reduced label 2 Making 4th-Ventricle map to reduced label 2 -------------- Making Left-Amygdala map to reduced label 3 Making Left-Cerebral-Cortex map to reduced label 3 Making Left-Hippocampus map to reduced label 3 -------------- Making Left-Caudate map to reduced label 4 -------------- Making Left-Accumbens-area map to reduced label 5 -------------- Making Left-Pallidum map to reduced label 6 -------------- Making Left-Putamen map to reduced label 7 -------------- Making Left-Thalamus-Proper map to reduced label 8 -------------- Making Left-choroid-plexus map to reduced label 9 -------------- Making Left-Cerebral-White-Matter map to reduced label 10 -------------- Making Background map to reduced label 11 -------------- Making Left-Cerebellum-White-Matter map to reduced label 12 -------------- Making Left-Cerebellum-Cortex map to reduced label 13 Computing hyperparameters for estimation of Gaussian parameters Smoothing mesh collection with kernel size 2.000000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 0 Iteration 1 of 7 minLogLikelihood = 7.3073e+06 minLogLikelihood = 7.1720e+06 minLogLikelihood = 7.1240e+06 minLogLikelihood = 7.1066e+06 minLogLikelihood = 7.0985e+06 minLogLikelihood = 7.0939e+06 minLogLikelihood = 7.0912e+06 minLogLikelihood = 7.0895e+06 minLogLikelihood = 7.0885e+06 minLogLikelihood = 7.0878e+06 minLogLikelihood = 7.0874e+06 minLogLikelihood = 7.0871e+06 minLogLikelihood = 7.0869e+06 minLogLikelihood = 7.0867e+06 minLogLikelihood = 7.0866e+06 minLogLikelihood = 7.0865e+06 minLogLikelihood = 7.0865e+06 EM converged! ans = 93.2894 65.2835 79.7371 101.3763 105.8111 103.5782 104.1765 88.4192 102.9143 94.2918 43.4504 88.9715 74.0292 ans = 1.0e+05 * 0.0331 4.8683 0.1943 0.0077 0.0033 0.0014 0.0023 0.9126 0.0138 0.7683 2.0696 0.0020 0.0582 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.017385 precisions[0][0][1] = 0.001433 precisions[0][0][2] = 0.007175 precisions[0][0][3] = 0.036133 precisions[0][0][4] = 0.054963 precisions[0][0][5] = 0.085791 precisions[0][0][6] = 0.066462 precisions[0][0][7] = 0.003310 precisions[0][0][8] = 0.026952 precisions[0][0][9] = 0.003608 precisions[0][0][10] = 0.002198 precisions[0][0][11] = 0.070198 precisions[0][0][12] = 0.013112 means[0][0] = 93.289413 means[0][1] = 65.283470 means[0][2] = 79.737106 means[0][3] = 101.376343 means[0][4] = 105.811050 means[0][5] = 103.578178 means[0][6] = 104.176537 means[0][7] = 88.419159 means[0][8] = 102.914253 means[0][9] = 94.291779 means[0][10] = 43.450413 means[0][11] = 88.971497 means[0][12] = 74.029221 Resolution level 1 iteration 1 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.3153 seconds minLogLikelihoodTimesPrior = 7.1165e+06 Resolution level 1 iteration 1 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.51804 voxels in 1.6229 seconds minLogLikelihoodTimesPrior = 7.1051e+06 Resolution level 1 iteration 1 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.64813 voxels in 1.8796 seconds minLogLikelihoodTimesPrior = 7.0946e+06 Resolution level 1 iteration 1 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.94096 voxels in 1.6111 seconds minLogLikelihoodTimesPrior = 7.0768e+06 Resolution level 1 iteration 1 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.76627 voxels in 2.5043 seconds minLogLikelihoodTimesPrior = 7.0639e+06 Resolution level 1 iteration 1 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.23807 voxels in 4.3898 seconds minLogLikelihoodTimesPrior = 7.0591e+06 Resolution level 1 iteration 1 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.40965 voxels in 3.5763 seconds minLogLikelihoodTimesPrior = 7.0586e+06 Resolution level 1 iteration 1 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.096158 voxels in 1.6271 seconds minLogLikelihoodTimesPrior = 7.0576e+06 Resolution level 1 iteration 1 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.065711 voxels in 6.5797 seconds minLogLikelihoodTimesPrior = 7.0576e+06 Resolution level 1 iteration 1 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00040897 voxels in 1.6395 seconds minLogLikelihoodTimesPrior = 7.0576e+06 Resolution level 1 iteration 1 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0010031 voxels in 1.6666 seconds minLogLikelihoodTimesPrior = 7.0576e+06 Resolution level 1 iteration 1 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0015377 voxels in 1.6421 seconds minLogLikelihoodTimesPrior = 7.0576e+06 Resolution level 1 iteration 1 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0039806 voxels in 1.6284 seconds minLogLikelihoodTimesPrior = 7.0576e+06 Resolution level 1 iteration 1 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0062591 voxels in 1.6494 seconds minLogLikelihoodTimesPrior = 7.0575e+06 Resolution level 1 iteration 1 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.015988 voxels in 1.6316 seconds minLogLikelihoodTimesPrior = 7.0574e+06 Resolution level 1 iteration 1 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.019462 voxels in 1.6475 seconds minLogLikelihoodTimesPrior = 7.0571e+06 Resolution level 1 iteration 1 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.076268 voxels in 1.6935 seconds minLogLikelihoodTimesPrior = 7.0566e+06 Resolution level 1 iteration 1 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.059613 voxels in 1.6279 seconds minLogLikelihoodTimesPrior = 7.0556e+06 Resolution level 1 iteration 1 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.23423 voxels in 1.6271 seconds minLogLikelihoodTimesPrior = 7.0537e+06 Resolution level 1 iteration 1 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20166 voxels in 1.7543 seconds minLogLikelihoodTimesPrior = 7.0500e+06 Iteration 2 of 7 minLogLikelihood = 7.0050e+06 minLogLikelihood = 7.0032e+06 minLogLikelihood = 7.0023e+06 minLogLikelihood = 7.0017e+06 minLogLikelihood = 7.0014e+06 minLogLikelihood = 7.0012e+06 minLogLikelihood = 7.0011e+06 minLogLikelihood = 7.0010e+06 minLogLikelihood = 7.0009e+06 EM converged! ans = 93.3675 63.2591 79.1179 101.2856 105.9690 103.6003 104.3231 89.1140 103.1929 95.5788 43.0178 89.4993 74.6055 ans = 1.0e+05 * 0.0311 4.3656 0.1664 0.0074 0.0029 0.0013 0.0020 0.7178 0.0130 0.4947 1.8444 0.0011 0.0376 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.017944 precisions[0][0][1] = 0.001513 precisions[0][0][2] = 0.007751 precisions[0][0][3] = 0.036693 precisions[0][0][4] = 0.058335 precisions[0][0][5] = 0.086120 precisions[0][0][6] = 0.071025 precisions[0][0][7] = 0.003733 precisions[0][0][8] = 0.027705 precisions[0][0][9] = 0.004496 precisions[0][0][10] = 0.002328 precisions[0][0][11] = 0.097036 precisions[0][0][12] = 0.016316 means[0][0] = 93.367493 means[0][1] = 63.259136 means[0][2] = 79.117912 means[0][3] = 101.285606 means[0][4] = 105.968971 means[0][5] = 103.600334 means[0][6] = 104.323105 means[0][7] = 89.114014 means[0][8] = 103.192947 means[0][9] = 95.578766 means[0][10] = 43.017803 means[0][11] = 89.499329 means[0][12] = 74.605499 Resolution level 1 iteration 2 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.4056 seconds minLogLikelihoodTimesPrior = 7.0370e+06 Resolution level 1 iteration 2 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.98818 voxels in 1.7311 seconds minLogLikelihoodTimesPrior = 7.0209e+06 Resolution level 1 iteration 2 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.22345 voxels in 3.7365 seconds minLogLikelihoodTimesPrior = 7.0177e+06 Resolution level 1 iteration 2 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31055 voxels in 1.684 seconds minLogLikelihoodTimesPrior = 7.0133e+06 Resolution level 1 iteration 2 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.52703 voxels in 1.6719 seconds minLogLikelihoodTimesPrior = 7.0084e+06 Resolution level 1 iteration 2 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.1766 voxels in 1.9399 seconds minLogLikelihoodTimesPrior = 7.0057e+06 Resolution level 1 iteration 2 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.32747 voxels in 3.4716 seconds minLogLikelihoodTimesPrior = 7.0049e+06 Resolution level 1 iteration 2 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16628 voxels in 3.4384 seconds minLogLikelihoodTimesPrior = 7.0048e+06 Resolution level 1 iteration 2 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.054884 voxels in 1.783 seconds minLogLikelihoodTimesPrior = 7.0047e+06 Resolution level 1 iteration 2 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21311 voxels in 1.6683 seconds minLogLikelihoodTimesPrior = 7.0046e+06 Resolution level 1 iteration 2 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0081077 voxels in 1.6629 seconds minLogLikelihoodTimesPrior = 7.0045e+06 Resolution level 1 iteration 2 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1137 voxels in 1.6663 seconds minLogLikelihoodTimesPrior = 7.0042e+06 Resolution level 1 iteration 2 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.031677 voxels in 1.6699 seconds minLogLikelihoodTimesPrior = 7.0036e+06 Resolution level 1 iteration 2 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.12098 voxels in 1.6598 seconds minLogLikelihoodTimesPrior = 7.0025e+06 Resolution level 1 iteration 2 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29858 voxels in 1.8288 seconds minLogLikelihoodTimesPrior = 7.0005e+06 Resolution level 1 iteration 2 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21406 voxels in 1.7359 seconds minLogLikelihoodTimesPrior = 6.9964e+06 Resolution level 1 iteration 2 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.4043 voxels in 1.7819 seconds minLogLikelihoodTimesPrior = 6.9886e+06 Resolution level 1 iteration 2 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.76337 voxels in 2.6117 seconds minLogLikelihoodTimesPrior = 6.9848e+06 Resolution level 1 iteration 2 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.37446 voxels in 2.5879 seconds minLogLikelihoodTimesPrior = 6.9819e+06 Resolution level 1 iteration 2 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.071437 voxels in 1.6796 seconds minLogLikelihoodTimesPrior = 6.9797e+06 Iteration 3 of 7 minLogLikelihood = 6.9137e+06 minLogLikelihood = 6.9116e+06 minLogLikelihood = 6.9107e+06 minLogLikelihood = 6.9102e+06 minLogLikelihood = 6.9098e+06 minLogLikelihood = 6.9096e+06 minLogLikelihood = 6.9095e+06 minLogLikelihood = 6.9093e+06 minLogLikelihood = 6.9092e+06 minLogLikelihood = 6.9092e+06 minLogLikelihood = 6.9091e+06 EM converged! ans = 93.3755 61.2680 78.1255 101.1171 106.1262 103.6395 104.4463 89.8445 103.4969 97.4619 42.6246 89.7687 75.0139 ans = 1.0e+05 * 0.0293 3.6159 0.1252 0.0073 0.0025 0.0013 0.0018 0.5207 0.0125 0.2380 1.6674 0.0007 0.0278 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.018459 precisions[0][0][1] = 0.001663 precisions[0][0][2] = 0.008936 precisions[0][0][3] = 0.037080 precisions[0][0][4] = 0.062637 precisions[0][0][5] = 0.086893 precisions[0][0][6] = 0.075195 precisions[0][0][7] = 0.004382 precisions[0][0][8] = 0.028277 precisions[0][0][9] = 0.006482 precisions[0][0][10] = 0.002449 precisions[0][0][11] = 0.117135 precisions[0][0][12] = 0.018959 means[0][0] = 93.375504 means[0][1] = 61.267998 means[0][2] = 78.125534 means[0][3] = 101.117073 means[0][4] = 106.126236 means[0][5] = 103.639519 means[0][6] = 104.446297 means[0][7] = 89.844460 means[0][8] = 103.496910 means[0][9] = 97.461899 means[0][10] = 42.624607 means[0][11] = 89.768654 means[0][12] = 75.013931 Resolution level 1 iteration 3 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.5601 seconds minLogLikelihoodTimesPrior = 6.9742e+06 Resolution level 1 iteration 3 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.36446 voxels in 1.6448 seconds minLogLikelihoodTimesPrior = 6.9721e+06 Resolution level 1 iteration 3 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31852 voxels in 1.6811 seconds minLogLikelihoodTimesPrior = 6.9682e+06 Resolution level 1 iteration 3 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.42926 voxels in 1.6579 seconds minLogLikelihoodTimesPrior = 6.9607e+06 Resolution level 1 iteration 3 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.71517 voxels in 1.6504 seconds minLogLikelihoodTimesPrior = 6.9538e+06 Resolution level 1 iteration 3 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.041182 voxels in 5.6215 seconds minLogLikelihoodTimesPrior = 6.9530e+06 Resolution level 1 iteration 3 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.014837 voxels in 1.6362 seconds minLogLikelihoodTimesPrior = 6.9518e+06 Resolution level 1 iteration 3 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.029687 voxels in 4.0995 seconds minLogLikelihoodTimesPrior = 6.9513e+06 Resolution level 1 iteration 3 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0050037 voxels in 1.6941 seconds minLogLikelihoodTimesPrior = 6.9505e+06 Resolution level 1 iteration 3 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.011109 voxels in 5.7933 seconds minLogLikelihoodTimesPrior = 6.9503e+06 Resolution level 1 iteration 3 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0012467 voxels in 1.6724 seconds minLogLikelihoodTimesPrior = 6.9501e+06 Resolution level 1 iteration 3 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0049564 voxels in 5.908 seconds minLogLikelihoodTimesPrior = 6.9500e+06 Resolution level 1 iteration 3 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00030167 voxels in 1.7916 seconds minLogLikelihoodTimesPrior = 6.9500e+06 Resolution level 1 iteration 3 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0023814 voxels in 6.8221 seconds minLogLikelihoodTimesPrior = 6.9499e+06 Resolution level 1 iteration 3 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 6.5282e-05 voxels in 1.6829 seconds minLogLikelihoodTimesPrior = 6.9499e+06 Resolution level 1 iteration 3 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0013138 voxels in 6.7665 seconds minLogLikelihoodTimesPrior = 6.9499e+06 Resolution level 1 iteration 3 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 5.7277e-06 voxels in 1.6875 seconds minLogLikelihoodTimesPrior = 6.9499e+06 Resolution level 1 iteration 3 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00058629 voxels in 4.99 seconds minLogLikelihoodTimesPrior = 6.9499e+06 Resolution level 1 iteration 3 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 5.4955e-07 voxels in 1.6527 seconds minLogLikelihoodTimesPrior = 6.9499e+06 Resolution level 1 iteration 3 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 8.5608e-07 voxels in 1.6466 seconds minLogLikelihoodTimesPrior = 6.9499e+06 Iteration 4 of 7 minLogLikelihood = 6.8697e+06 minLogLikelihood = 6.8692e+06 minLogLikelihood = 6.8689e+06 minLogLikelihood = 6.8687e+06 minLogLikelihood = 6.8686e+06 minLogLikelihood = 6.8685e+06 minLogLikelihood = 6.8684e+06 EM converged! ans = 93.3456 60.6106 77.6585 101.0156 106.1779 103.6672 104.4918 90.2788 103.6021 98.2668 42.4360 89.8323 75.1338 ans = 1.0e+05 * 0.0288 3.3041 0.1045 0.0073 0.0024 0.0013 0.0017 0.4185 0.0125 0.1680 1.5992 0.0007 0.0255 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.018620 precisions[0][0][1] = 0.001740 precisions[0][0][2] = 0.009784 precisions[0][0][3] = 0.037099 precisions[0][0][4] = 0.064268 precisions[0][0][5] = 0.087475 precisions[0][0][6] = 0.076765 precisions[0][0][7] = 0.004888 precisions[0][0][8] = 0.028266 precisions[0][0][9] = 0.007715 precisions[0][0][10] = 0.002501 precisions[0][0][11] = 0.122763 precisions[0][0][12] = 0.019810 means[0][0] = 93.345642 means[0][1] = 60.610554 means[0][2] = 77.658485 means[0][3] = 101.015648 means[0][4] = 106.177925 means[0][5] = 103.667183 means[0][6] = 104.491814 means[0][7] = 90.278770 means[0][8] = 103.602074 means[0][9] = 98.266800 means[0][10] = 42.436031 means[0][11] = 89.832306 means[0][12] = 75.133789 Resolution level 1 iteration 4 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.25 voxels in 4.051 seconds minLogLikelihoodTimesPrior = 6.9453e+06 Resolution level 1 iteration 4 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.63583 voxels in 1.6903 seconds minLogLikelihoodTimesPrior = 6.9445e+06 Resolution level 1 iteration 4 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.22169 voxels in 1.7756 seconds minLogLikelihoodTimesPrior = 6.9431e+06 Resolution level 1 iteration 4 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16144 voxels in 1.7477 seconds minLogLikelihoodTimesPrior = 6.9401e+06 Resolution level 1 iteration 4 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.4295 voxels in 1.6711 seconds minLogLikelihoodTimesPrior = 6.9344e+06 Resolution level 1 iteration 4 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.649 voxels in 1.6594 seconds minLogLikelihoodTimesPrior = 6.9242e+06 Resolution level 1 iteration 4 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.61023 voxels in 2.3235 seconds minLogLikelihoodTimesPrior = 6.9202e+06 Resolution level 1 iteration 4 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.47506 voxels in 1.9885 seconds minLogLikelihoodTimesPrior = 6.9178e+06 Resolution level 1 iteration 4 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29568 voxels in 1.6212 seconds minLogLikelihoodTimesPrior = 6.9149e+06 Resolution level 1 iteration 4 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.39916 voxels in 1.633 seconds minLogLikelihoodTimesPrior = 6.9143e+06 Resolution level 1 iteration 4 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.3216 voxels in 1.6365 seconds minLogLikelihoodTimesPrior = 6.9133e+06 Resolution level 1 iteration 4 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20573 voxels in 1.6458 seconds minLogLikelihoodTimesPrior = 6.9114e+06 Resolution level 1 iteration 4 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.57136 voxels in 1.6139 seconds minLogLikelihoodTimesPrior = 6.9077e+06 Resolution level 1 iteration 4 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.91755 voxels in 1.6552 seconds minLogLikelihoodTimesPrior = 6.9011e+06 Resolution level 1 iteration 4 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.97065 voxels in 1.6302 seconds minLogLikelihoodTimesPrior = 6.8893e+06 Resolution level 1 iteration 4 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1086 voxels in 4.6419 seconds minLogLikelihoodTimesPrior = 6.8879e+06 Resolution level 1 iteration 4 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16927 voxels in 1.6368 seconds minLogLikelihoodTimesPrior = 6.8874e+06 Resolution level 1 iteration 4 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14692 voxels in 1.6587 seconds minLogLikelihoodTimesPrior = 6.8866e+06 Resolution level 1 iteration 4 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.33252 voxels in 1.6286 seconds minLogLikelihoodTimesPrior = 6.8850e+06 Resolution level 1 iteration 4 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24114 voxels in 1.6291 seconds minLogLikelihoodTimesPrior = 6.8820e+06 Iteration 5 of 7 minLogLikelihood = 6.7821e+06 minLogLikelihood = 6.7800e+06 minLogLikelihood = 6.7791e+06 minLogLikelihood = 6.7786e+06 minLogLikelihood = 6.7784e+06 minLogLikelihood = 6.7782e+06 minLogLikelihood = 6.7782e+06 minLogLikelihood = 6.7781e+06 EM converged! ans = 93.2469 59.5421 76.9010 100.7586 106.2355 103.7536 104.5773 91.2872 103.8241 99.2996 41.9510 89.9213 75.3281 ans = 1.0e+05 * 0.0278 2.7933 0.0702 0.0072 0.0023 0.0013 0.0016 0.2391 0.0127 0.0992 1.4485 0.0006 0.0217 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.018967 precisions[0][0][1] = 0.001892 precisions[0][0][2] = 0.011937 precisions[0][0][3] = 0.037217 precisions[0][0][4] = 0.065952 precisions[0][0][5] = 0.089410 precisions[0][0][6] = 0.079357 precisions[0][0][7] = 0.006467 precisions[0][0][8] = 0.028071 precisions[0][0][9] = 0.010039 precisions[0][0][10] = 0.002628 precisions[0][0][11] = 0.131616 precisions[0][0][12] = 0.021474 means[0][0] = 93.246895 means[0][1] = 59.542057 means[0][2] = 76.900993 means[0][3] = 100.758583 means[0][4] = 106.235474 means[0][5] = 103.753624 means[0][6] = 104.577339 means[0][7] = 91.287155 means[0][8] = 103.824081 means[0][9] = 99.299606 means[0][10] = 41.951038 means[0][11] = 89.921280 means[0][12] = 75.328079 Resolution level 1 iteration 5 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.2946 seconds minLogLikelihoodTimesPrior = 6.8641e+06 Resolution level 1 iteration 5 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.44086 voxels in 3.5131 seconds minLogLikelihoodTimesPrior = 6.8580e+06 Resolution level 1 iteration 5 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16728 voxels in 5.1439 seconds minLogLikelihoodTimesPrior = 6.8579e+06 Resolution level 1 iteration 5 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.029334 voxels in 1.6217 seconds minLogLikelihoodTimesPrior = 6.8577e+06 Resolution level 1 iteration 5 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.057249 voxels in 1.626 seconds minLogLikelihoodTimesPrior = 6.8576e+06 Resolution level 1 iteration 5 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.044409 voxels in 1.6432 seconds minLogLikelihoodTimesPrior = 6.8572e+06 Resolution level 1 iteration 5 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17135 voxels in 1.6615 seconds minLogLikelihoodTimesPrior = 6.8568e+06 Resolution level 1 iteration 5 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14784 voxels in 1.6445 seconds minLogLikelihoodTimesPrior = 6.8559e+06 Resolution level 1 iteration 5 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24576 voxels in 2.5815 seconds minLogLikelihoodTimesPrior = 6.8552e+06 Resolution level 1 iteration 5 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.12296 voxels in 1.6526 seconds minLogLikelihoodTimesPrior = 6.8537e+06 Resolution level 1 iteration 5 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.33597 voxels in 1.6272 seconds minLogLikelihoodTimesPrior = 6.8509e+06 Resolution level 1 iteration 5 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.45315 voxels in 1.6178 seconds minLogLikelihoodTimesPrior = 6.8457e+06 Resolution level 1 iteration 5 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.83463 voxels in 1.6233 seconds minLogLikelihoodTimesPrior = 6.8361e+06 Resolution level 1 iteration 5 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.38194 voxels in 2.0448 seconds minLogLikelihoodTimesPrior = 6.8323e+06 Resolution level 1 iteration 5 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.56327 voxels in 1.7716 seconds minLogLikelihoodTimesPrior = 6.8258e+06 Resolution level 1 iteration 5 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.5089 voxels in 2.2637 seconds minLogLikelihoodTimesPrior = 6.8251e+06 Resolution level 1 iteration 5 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20138 voxels in 1.6347 seconds minLogLikelihoodTimesPrior = 6.8240e+06 Resolution level 1 iteration 5 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.85169 voxels in 1.9206 seconds minLogLikelihoodTimesPrior = 6.8231e+06 Resolution level 1 iteration 5 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.41732 voxels in 1.6541 seconds minLogLikelihoodTimesPrior = 6.8216e+06 Resolution level 1 iteration 5 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.26914 voxels in 1.8382 seconds minLogLikelihoodTimesPrior = 6.8203e+06 Iteration 6 of 7 minLogLikelihood = 6.6960e+06 minLogLikelihood = 6.6941e+06 minLogLikelihood = 6.6934e+06 minLogLikelihood = 6.6932e+06 minLogLikelihood = 6.6930e+06 minLogLikelihood = 6.6930e+06 EM converged! ans = 93.0945 58.8767 76.3367 100.4726 106.2359 103.8828 104.6500 91.6813 104.0857 99.8688 41.4079 89.9675 75.4506 ans = 1.0e+05 * 0.0267 2.4703 0.0490 0.0072 0.0023 0.0012 0.0015 0.1681 0.0130 0.0684 1.3054 0.0005 0.0195 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.019371 precisions[0][0][1] = 0.002012 precisions[0][0][2] = 0.014279 precisions[0][0][3] = 0.037373 precisions[0][0][4] = 0.065867 precisions[0][0][5] = 0.092764 precisions[0][0][6] = 0.081149 precisions[0][0][7] = 0.007712 precisions[0][0][8] = 0.027692 precisions[0][0][9] = 0.012092 precisions[0][0][10] = 0.002768 precisions[0][0][11] = 0.137111 precisions[0][0][12] = 0.022643 means[0][0] = 93.094490 means[0][1] = 58.876709 means[0][2] = 76.336731 means[0][3] = 100.472603 means[0][4] = 106.235901 means[0][5] = 103.882759 means[0][6] = 104.650009 means[0][7] = 91.681328 means[0][8] = 104.085678 means[0][9] = 99.868843 means[0][10] = 41.407894 means[0][11] = 89.967461 means[0][12] = 75.450623 Resolution level 1 iteration 6 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.3162 seconds minLogLikelihoodTimesPrior = 6.8167e+06 Resolution level 1 iteration 6 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13602 voxels in 1.6107 seconds minLogLikelihoodTimesPrior = 6.8153e+06 Resolution level 1 iteration 6 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.62039 voxels in 1.862 seconds minLogLikelihoodTimesPrior = 6.8140e+06 Resolution level 1 iteration 6 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.3158 voxels in 1.757 seconds minLogLikelihoodTimesPrior = 6.8116e+06 Resolution level 1 iteration 6 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.49714 voxels in 1.6144 seconds minLogLikelihoodTimesPrior = 6.8071e+06 Resolution level 1 iteration 6 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.37303 voxels in 2.1361 seconds minLogLikelihoodTimesPrior = 6.8031e+06 Resolution level 1 iteration 6 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.65762 voxels in 1.6161 seconds minLogLikelihoodTimesPrior = 6.7963e+06 Resolution level 1 iteration 6 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.75654 voxels in 1.9296 seconds minLogLikelihoodTimesPrior = 6.7936e+06 Resolution level 1 iteration 6 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30685 voxels in 1.6397 seconds minLogLikelihoodTimesPrior = 6.7912e+06 Resolution level 1 iteration 6 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.26768 voxels in 3.2889 seconds minLogLikelihoodTimesPrior = 6.7889e+06 Resolution level 1 iteration 6 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.44867 voxels in 1.6998 seconds minLogLikelihoodTimesPrior = 6.7850e+06 Resolution level 1 iteration 6 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17961 voxels in 2.4668 seconds minLogLikelihoodTimesPrior = 6.7834e+06 Resolution level 1 iteration 6 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.055967 voxels in 6.6917 seconds minLogLikelihoodTimesPrior = 6.7834e+06 Resolution level 1 iteration 6 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0059815 voxels in 1.6242 seconds minLogLikelihoodTimesPrior = 6.7834e+06 Resolution level 1 iteration 6 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.033177 voxels in 1.6164 seconds minLogLikelihoodTimesPrior = 6.7833e+06 Resolution level 1 iteration 6 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.043353 voxels in 1.6198 seconds minLogLikelihoodTimesPrior = 6.7832e+06 Resolution level 1 iteration 6 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.065111 voxels in 1.6423 seconds minLogLikelihoodTimesPrior = 6.7830e+06 Resolution level 1 iteration 6 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.096572 voxels in 2.4739 seconds minLogLikelihoodTimesPrior = 6.7830e+06 Resolution level 1 iteration 6 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0107 voxels in 1.6053 seconds minLogLikelihoodTimesPrior = 6.7829e+06 Resolution level 1 iteration 6 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.016259 voxels in 1.6052 seconds minLogLikelihoodTimesPrior = 6.7829e+06 Iteration 7 of 7 minLogLikelihood = 6.6448e+06 minLogLikelihood = 6.6440e+06 minLogLikelihood = 6.6438e+06 minLogLikelihood = 6.6437e+06 minLogLikelihood = 6.6437e+06 EM converged! ans = 92.9545 58.6023 76.0667 100.2614 106.1798 104.0044 104.6971 91.7014 104.3355 100.1611 41.0723 89.9867 75.5069 ans = 1.0e+05 * 0.0257 2.3274 0.0411 0.0071 0.0024 0.0011 0.0015 0.1445 0.0131 0.0550 1.2262 0.0005 0.0185 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.019711 precisions[0][0][1] = 0.002073 precisions[0][0][2] = 0.015607 precisions[0][0][3] = 0.037606 precisions[0][0][4] = 0.064168 precisions[0][0][5] = 0.096114 precisions[0][0][6] = 0.082008 precisions[0][0][7] = 0.008320 precisions[0][0][8] = 0.027582 precisions[0][0][9] = 0.013488 precisions[0][0][10] = 0.002856 precisions[0][0][11] = 0.139779 precisions[0][0][12] = 0.023234 means[0][0] = 92.954514 means[0][1] = 58.602257 means[0][2] = 76.066658 means[0][3] = 100.261360 means[0][4] = 106.179764 means[0][5] = 104.004440 means[0][6] = 104.697098 means[0][7] = 91.701385 means[0][8] = 104.335487 means[0][9] = 100.161072 means[0][10] = 41.072338 means[0][11] = 89.986748 means[0][12] = 75.506905 Resolution level 1 iteration 7 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.5716 seconds minLogLikelihoodTimesPrior = 6.7811e+06 Resolution level 1 iteration 7 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.54037 voxels in 1.6561 seconds minLogLikelihoodTimesPrior = 6.7807e+06 Resolution level 1 iteration 7 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.22067 voxels in 1.6126 seconds minLogLikelihoodTimesPrior = 6.7803e+06 Resolution level 1 iteration 7 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.22017 voxels in 1.5981 seconds minLogLikelihoodTimesPrior = 6.7798e+06 Resolution level 1 iteration 7 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.36589 voxels in 1.6699 seconds minLogLikelihoodTimesPrior = 6.7790e+06 Resolution level 1 iteration 7 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.3818 voxels in 1.6225 seconds minLogLikelihoodTimesPrior = 6.7775e+06 Resolution level 1 iteration 7 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.54192 voxels in 1.6496 seconds minLogLikelihoodTimesPrior = 6.7749e+06 Resolution level 1 iteration 7 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.49008 voxels in 2.4987 seconds minLogLikelihoodTimesPrior = 6.7726e+06 Resolution level 1 iteration 7 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31986 voxels in 2.7804 seconds minLogLikelihoodTimesPrior = 6.7720e+06 Resolution level 1 iteration 7 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.2443 voxels in 1.6111 seconds minLogLikelihoodTimesPrior = 6.7709e+06 Resolution level 1 iteration 7 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21305 voxels in 1.6203 seconds minLogLikelihoodTimesPrior = 6.7689e+06 Resolution level 1 iteration 7 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.35251 voxels in 1.6189 seconds minLogLikelihoodTimesPrior = 6.7653e+06 Resolution level 1 iteration 7 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1563 voxels in 2.9842 seconds minLogLikelihoodTimesPrior = 6.7639e+06 Resolution level 1 iteration 7 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.23809 voxels in 1.6153 seconds minLogLikelihoodTimesPrior = 6.7615e+06 Resolution level 1 iteration 7 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.019597 voxels in 9.6971 seconds minLogLikelihoodTimesPrior = 6.7615e+06 Resolution level 1 iteration 7 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0030811 voxels in 1.6093 seconds minLogLikelihoodTimesPrior = 6.7614e+06 Resolution level 1 iteration 7 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0094225 voxels in 1.6064 seconds minLogLikelihoodTimesPrior = 6.7614e+06 Resolution level 1 iteration 7 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.046806 voxels in 1.6075 seconds minLogLikelihoodTimesPrior = 6.7613e+06 Resolution level 1 iteration 7 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.03385 voxels in 1.6556 seconds minLogLikelihoodTimesPrior = 6.7612e+06 Resolution level 1 iteration 7 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.070712 voxels in 1.6261 seconds minLogLikelihoodTimesPrior = 6.7611e+06 Smoothing mesh collection with kernel size 1.000000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 0 Iteration 1 of 5 minLogLikelihood = 6.6326e+06 minLogLikelihood = 6.6323e+06 minLogLikelihood = 6.6322e+06 EM converged! ans = 92.8712 59.4021 76.0508 100.1118 106.1037 104.0611 104.6840 91.5014 104.2220 100.1038 41.0990 89.9875 75.4919 ans = 1.0e+05 * 0.0261 2.6222 0.0433 0.0075 0.0027 0.0011 0.0016 0.1569 0.0145 0.0579 1.2453 0.0005 0.0195 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.019557 precisions[0][0][1] = 0.001953 precisions[0][0][2] = 0.015191 precisions[0][0][3] = 0.036579 precisions[0][0][4] = 0.060658 precisions[0][0][5] = 0.095155 precisions[0][0][6] = 0.079449 precisions[0][0][7] = 0.007983 precisions[0][0][8] = 0.026294 precisions[0][0][9] = 0.013142 precisions[0][0][10] = 0.002834 precisions[0][0][11] = 0.138019 precisions[0][0][12] = 0.022666 means[0][0] = 92.871246 means[0][1] = 59.402100 means[0][2] = 76.050835 means[0][3] = 100.111794 means[0][4] = 106.103729 means[0][5] = 104.061104 means[0][6] = 104.684044 means[0][7] = 91.501442 means[0][8] = 104.222023 means[0][9] = 100.103813 means[0][10] = 41.099014 means[0][11] = 89.987541 means[0][12] = 75.491943 Resolution level 2 iteration 1 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.5 voxels in 3.4086 seconds minLogLikelihoodTimesPrior = 6.7765e+06 Resolution level 2 iteration 1 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24355 voxels in 1.995 seconds minLogLikelihoodTimesPrior = 6.7757e+06 Resolution level 2 iteration 1 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.068084 voxels in 1.6724 seconds minLogLikelihoodTimesPrior = 6.7752e+06 Resolution level 2 iteration 1 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13104 voxels in 1.9912 seconds minLogLikelihoodTimesPrior = 6.7751e+06 Resolution level 2 iteration 1 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.056221 voxels in 1.6953 seconds minLogLikelihoodTimesPrior = 6.7749e+06 Resolution level 2 iteration 1 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.034152 voxels in 1.7047 seconds minLogLikelihoodTimesPrior = 6.7748e+06 Resolution level 2 iteration 1 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.04188 voxels in 1.6905 seconds minLogLikelihoodTimesPrior = 6.7745e+06 Resolution level 2 iteration 1 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.01191 voxels in 13.0912 seconds minLogLikelihoodTimesPrior = 6.7744e+06 Resolution level 2 iteration 1 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00053106 voxels in 1.6958 seconds minLogLikelihoodTimesPrior = 6.7744e+06 Resolution level 2 iteration 1 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.015742 voxels in 1.6955 seconds minLogLikelihoodTimesPrior = 6.7744e+06 Resolution level 2 iteration 1 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0012077 voxels in 1.6917 seconds minLogLikelihoodTimesPrior = 6.7744e+06 Resolution level 2 iteration 1 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0068781 voxels in 1.7043 seconds minLogLikelihoodTimesPrior = 6.7744e+06 Resolution level 2 iteration 1 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0067029 voxels in 1.6905 seconds minLogLikelihoodTimesPrior = 6.7744e+06 Resolution level 2 iteration 1 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.024379 voxels in 1.6834 seconds minLogLikelihoodTimesPrior = 6.7743e+06 Resolution level 2 iteration 1 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.017132 voxels in 1.6878 seconds minLogLikelihoodTimesPrior = 6.7741e+06 Resolution level 2 iteration 1 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.06233 voxels in 1.6814 seconds minLogLikelihoodTimesPrior = 6.7739e+06 Resolution level 2 iteration 1 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.069949 voxels in 1.6959 seconds minLogLikelihoodTimesPrior = 6.7733e+06 Resolution level 2 iteration 1 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14297 voxels in 1.6675 seconds minLogLikelihoodTimesPrior = 6.7722e+06 Resolution level 2 iteration 1 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30338 voxels in 1.6873 seconds minLogLikelihoodTimesPrior = 6.7702e+06 Resolution level 2 iteration 1 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.42476 voxels in 1.6965 seconds minLogLikelihoodTimesPrior = 6.7665e+06 Iteration 2 of 5 minLogLikelihood = 6.6089e+06 minLogLikelihood = 6.6089e+06 EM converged! ans = 92.8453 59.4117 76.0111 100.0712 106.0595 104.0918 104.6964 91.4793 104.2283 100.1181 41.0276 89.9898 75.4973 ans = 1.0e+05 * 0.0258 2.6185 0.0428 0.0074 0.0028 0.0011 0.0016 0.1541 0.0148 0.0568 1.2276 0.0005 0.0193 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.019696 precisions[0][0][1] = 0.001954 precisions[0][0][2] = 0.015278 precisions[0][0][3] = 0.036778 precisions[0][0][4] = 0.059786 precisions[0][0][5] = 0.095955 precisions[0][0][6] = 0.079779 precisions[0][0][7] = 0.008056 precisions[0][0][8] = 0.025985 precisions[0][0][9] = 0.013269 precisions[0][0][10] = 0.002854 precisions[0][0][11] = 0.138632 precisions[0][0][12] = 0.022776 means[0][0] = 92.845329 means[0][1] = 59.411694 means[0][2] = 76.011055 means[0][3] = 100.071243 means[0][4] = 106.059517 means[0][5] = 104.091759 means[0][6] = 104.696358 means[0][7] = 91.479294 means[0][8] = 104.228294 means[0][9] = 100.118118 means[0][10] = 41.027596 means[0][11] = 89.989799 means[0][12] = 75.497284 Resolution level 2 iteration 2 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.5 voxels in 3.7179 seconds minLogLikelihoodTimesPrior = 6.7650e+06 Resolution level 2 iteration 2 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21212 voxels in 2.2985 seconds minLogLikelihoodTimesPrior = 6.7647e+06 Resolution level 2 iteration 2 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11399 voxels in 1.6633 seconds minLogLikelihoodTimesPrior = 6.7641e+06 Resolution level 2 iteration 2 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.075277 voxels in 1.6606 seconds minLogLikelihoodTimesPrior = 6.7638e+06 Resolution level 2 iteration 2 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16058 voxels in 1.6645 seconds minLogLikelihoodTimesPrior = 6.7633e+06 Resolution level 2 iteration 2 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.46249 voxels in 1.6434 seconds minLogLikelihoodTimesPrior = 6.7627e+06 Resolution level 2 iteration 2 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.26131 voxels in 1.6469 seconds minLogLikelihoodTimesPrior = 6.7615e+06 Resolution level 2 iteration 2 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30537 voxels in 1.8057 seconds minLogLikelihoodTimesPrior = 6.7602e+06 Resolution level 2 iteration 2 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.28938 voxels in 1.7285 seconds minLogLikelihoodTimesPrior = 6.7577e+06 Resolution level 2 iteration 2 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.038255 voxels in 1.6912 seconds minLogLikelihoodTimesPrior = 6.7569e+06 Resolution level 2 iteration 2 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.58642 voxels in 1.658 seconds minLogLikelihoodTimesPrior = 6.7565e+06 Resolution level 2 iteration 2 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.26022 voxels in 1.6609 seconds minLogLikelihoodTimesPrior = 6.7561e+06 Resolution level 2 iteration 2 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24177 voxels in 4.2071 seconds minLogLikelihoodTimesPrior = 6.7561e+06 Resolution level 2 iteration 2 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0031436 voxels in 1.704 seconds minLogLikelihoodTimesPrior = 6.7560e+06 Resolution level 2 iteration 2 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0050017 voxels in 1.6637 seconds minLogLikelihoodTimesPrior = 6.7560e+06 Resolution level 2 iteration 2 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0096134 voxels in 1.6686 seconds minLogLikelihoodTimesPrior = 6.7560e+06 Resolution level 2 iteration 2 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.017129 voxels in 1.6979 seconds minLogLikelihoodTimesPrior = 6.7559e+06 Resolution level 2 iteration 2 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.039522 voxels in 1.6876 seconds minLogLikelihoodTimesPrior = 6.7559e+06 Resolution level 2 iteration 2 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.05015 voxels in 1.7063 seconds minLogLikelihoodTimesPrior = 6.7557e+06 Resolution level 2 iteration 2 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.09226 voxels in 1.672 seconds minLogLikelihoodTimesPrior = 6.7554e+06 Iteration 3 of 5 minLogLikelihood = 6.5928e+06 minLogLikelihood = 6.5927e+06 minLogLikelihood = 6.5927e+06 EM converged! ans = 92.7913 59.3251 75.9454 100.0066 105.9718 104.1414 104.7163 91.4830 104.2822 100.1742 40.9254 89.9973 75.5100 ans = 1.0e+05 * 0.0253 2.5834 0.0414 0.0073 0.0030 0.0011 0.0016 0.1468 0.0151 0.0540 1.2037 0.0005 0.0189 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.019863 precisions[0][0][1] = 0.001967 precisions[0][0][2] = 0.015542 precisions[0][0][3] = 0.037008 precisions[0][0][4] = 0.057976 precisions[0][0][5] = 0.097341 precisions[0][0][6] = 0.080190 precisions[0][0][7] = 0.008253 precisions[0][0][8] = 0.025770 precisions[0][0][9] = 0.013611 precisions[0][0][10] = 0.002882 precisions[0][0][11] = 0.139866 precisions[0][0][12] = 0.023000 means[0][0] = 92.791267 means[0][1] = 59.325130 means[0][2] = 75.945374 means[0][3] = 100.006577 means[0][4] = 105.971764 means[0][5] = 104.141373 means[0][6] = 104.716339 means[0][7] = 91.482964 means[0][8] = 104.282211 means[0][9] = 100.174171 means[0][10] = 40.925377 means[0][11] = 89.997253 means[0][12] = 75.509987 Resolution level 2 iteration 3 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.25 voxels in 3.9691 seconds minLogLikelihoodTimesPrior = 6.7544e+06 Resolution level 2 iteration 3 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.39139 voxels in 1.6558 seconds minLogLikelihoodTimesPrior = 6.7527e+06 Resolution level 2 iteration 3 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.25506 voxels in 2.9098 seconds minLogLikelihoodTimesPrior = 6.7513e+06 Resolution level 2 iteration 3 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30023 voxels in 1.6726 seconds minLogLikelihoodTimesPrior = 6.7485e+06 Resolution level 2 iteration 3 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.41919 voxels in 2.5731 seconds minLogLikelihoodTimesPrior = 6.7482e+06 Resolution level 2 iteration 3 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.27254 voxels in 1.6517 seconds minLogLikelihoodTimesPrior = 6.7478e+06 Resolution level 2 iteration 3 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.40539 voxels in 1.6658 seconds minLogLikelihoodTimesPrior = 6.7474e+06 Resolution level 2 iteration 3 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.23546 voxels in 1.6509 seconds minLogLikelihoodTimesPrior = 6.7466e+06 Resolution level 2 iteration 3 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.33491 voxels in 1.6822 seconds minLogLikelihoodTimesPrior = 6.7452e+06 Resolution level 2 iteration 3 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.085145 voxels in 4.1583 seconds minLogLikelihoodTimesPrior = 6.7446e+06 Resolution level 2 iteration 3 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.36986 voxels in 1.6635 seconds minLogLikelihoodTimesPrior = 6.7444e+06 Resolution level 2 iteration 3 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13803 voxels in 1.6594 seconds minLogLikelihoodTimesPrior = 6.7441e+06 Resolution level 2 iteration 3 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14932 voxels in 1.696 seconds minLogLikelihoodTimesPrior = 6.7435e+06 Resolution level 2 iteration 3 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.27571 voxels in 1.659 seconds minLogLikelihoodTimesPrior = 6.7423e+06 Resolution level 2 iteration 3 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.35808 voxels in 1.6582 seconds minLogLikelihoodTimesPrior = 6.7401e+06 Resolution level 2 iteration 3 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.48059 voxels in 1.6536 seconds minLogLikelihoodTimesPrior = 6.7365e+06 Resolution level 2 iteration 3 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.36987 voxels in 2 seconds minLogLikelihoodTimesPrior = 6.7335e+06 Resolution level 2 iteration 3 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.69981 voxels in 1.6657 seconds minLogLikelihoodTimesPrior = 6.7299e+06 Resolution level 2 iteration 3 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21623 voxels in 1.6612 seconds minLogLikelihoodTimesPrior = 6.7285e+06 Resolution level 2 iteration 3 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31255 voxels in 1.6725 seconds minLogLikelihoodTimesPrior = 6.7278e+06 Iteration 4 of 5 minLogLikelihood = 6.5550e+06 minLogLikelihood = 6.5546e+06 minLogLikelihood = 6.5545e+06 minLogLikelihood = 6.5545e+06 EM converged! ans = 92.6465 59.0467 75.8341 99.8527 105.7348 104.2582 104.7565 91.4217 104.5490 100.3097 40.7363 90.0062 75.5314 ans = 1.0e+05 * 0.0242 2.4878 0.0389 0.0069 0.0035 0.0010 0.0015 0.1313 0.0148 0.0478 1.1587 0.0005 0.0181 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.020316 precisions[0][0][1] = 0.002005 precisions[0][0][2] = 0.016043 precisions[0][0][3] = 0.037989 precisions[0][0][4] = 0.053584 precisions[0][0][5] = 0.100709 precisions[0][0][6] = 0.080965 precisions[0][0][7] = 0.008726 precisions[0][0][8] = 0.025976 precisions[0][0][9] = 0.014463 precisions[0][0][10] = 0.002938 precisions[0][0][11] = 0.141524 precisions[0][0][12] = 0.023524 means[0][0] = 92.646461 means[0][1] = 59.046741 means[0][2] = 75.834122 means[0][3] = 99.852669 means[0][4] = 105.734840 means[0][5] = 104.258209 means[0][6] = 104.756485 means[0][7] = 91.421684 means[0][8] = 104.549019 means[0][9] = 100.309708 means[0][10] = 40.736298 means[0][11] = 90.006172 means[0][12] = 75.531425 Resolution level 2 iteration 4 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.502 seconds minLogLikelihoodTimesPrior = 6.7263e+06 Resolution level 2 iteration 4 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29537 voxels in 1.9605 seconds minLogLikelihoodTimesPrior = 6.7258e+06 Resolution level 2 iteration 4 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24963 voxels in 1.6611 seconds minLogLikelihoodTimesPrior = 6.7253e+06 Resolution level 2 iteration 4 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.2562 voxels in 1.6542 seconds minLogLikelihoodTimesPrior = 6.7248e+06 Resolution level 2 iteration 4 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.41824 voxels in 1.6887 seconds minLogLikelihoodTimesPrior = 6.7244e+06 Resolution level 2 iteration 4 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20466 voxels in 1.6638 seconds minLogLikelihoodTimesPrior = 6.7240e+06 Resolution level 2 iteration 4 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24957 voxels in 1.6539 seconds minLogLikelihoodTimesPrior = 6.7238e+06 Resolution level 2 iteration 4 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18593 voxels in 1.6769 seconds minLogLikelihoodTimesPrior = 6.7234e+06 Resolution level 2 iteration 4 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20157 voxels in 1.6609 seconds minLogLikelihoodTimesPrior = 6.7227e+06 Resolution level 2 iteration 4 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.33367 voxels in 1.6646 seconds minLogLikelihoodTimesPrior = 6.7214e+06 Resolution level 2 iteration 4 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.51232 voxels in 1.6562 seconds minLogLikelihoodTimesPrior = 6.7191e+06 Resolution level 2 iteration 4 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.7713 voxels in 1.6477 seconds minLogLikelihoodTimesPrior = 6.7155e+06 Resolution level 2 iteration 4 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.22267 voxels in 1.6925 seconds minLogLikelihoodTimesPrior = 6.7142e+06 Resolution level 2 iteration 4 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17355 voxels in 1.9747 seconds minLogLikelihoodTimesPrior = 6.7131e+06 Resolution level 2 iteration 4 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.050995 voxels in 6.7933 seconds minLogLikelihoodTimesPrior = 6.7130e+06 Resolution level 2 iteration 4 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0027774 voxels in 1.6633 seconds minLogLikelihoodTimesPrior = 6.7130e+06 Resolution level 2 iteration 4 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.009092 voxels in 1.6588 seconds minLogLikelihoodTimesPrior = 6.7130e+06 Resolution level 2 iteration 4 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.020712 voxels in 1.6794 seconds minLogLikelihoodTimesPrior = 6.7130e+06 Resolution level 2 iteration 4 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.035438 voxels in 1.6629 seconds minLogLikelihoodTimesPrior = 6.7129e+06 Resolution level 2 iteration 4 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.072894 voxels in 1.6755 seconds minLogLikelihoodTimesPrior = 6.7127e+06 Iteration 5 of 5 minLogLikelihood = 6.5370e+06 minLogLikelihood = 6.5368e+06 minLogLikelihood = 6.5368e+06 EM converged! ans = 92.5592 58.8310 75.7976 99.7709 105.5656 104.3322 104.7769 91.4276 104.7817 100.3723 40.6573 90.0097 75.5311 ans = 1.0e+05 * 0.0237 2.4251 0.0379 0.0067 0.0039 0.0009 0.0015 0.1214 0.0144 0.0451 1.1401 0.0005 0.0178 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.020558 precisions[0][0][1] = 0.002031 precisions[0][0][2] = 0.016248 precisions[0][0][3] = 0.038612 precisions[0][0][4] = 0.050752 precisions[0][0][5] = 0.102882 precisions[0][0][6] = 0.081365 precisions[0][0][7] = 0.009075 precisions[0][0][8] = 0.026364 precisions[0][0][9] = 0.014891 precisions[0][0][10] = 0.002962 precisions[0][0][11] = 0.142068 precisions[0][0][12] = 0.023733 means[0][0] = 92.559235 means[0][1] = 58.830975 means[0][2] = 75.797562 means[0][3] = 99.770859 means[0][4] = 105.565575 means[0][5] = 104.332153 means[0][6] = 104.776886 means[0][7] = 91.427605 means[0][8] = 104.781693 means[0][9] = 100.372353 means[0][10] = 40.657276 means[0][11] = 90.009666 means[0][12] = 75.531113 Resolution level 2 iteration 5 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.5 voxels in 4.3997 seconds minLogLikelihoodTimesPrior = 6.7121e+06 Resolution level 2 iteration 5 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18368 voxels in 3.305 seconds minLogLikelihoodTimesPrior = 6.7119e+06 Resolution level 2 iteration 5 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.075561 voxels in 1.6518 seconds minLogLikelihoodTimesPrior = 6.7118e+06 Resolution level 2 iteration 5 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18372 voxels in 1.6544 seconds minLogLikelihoodTimesPrior = 6.7115e+06 Resolution level 2 iteration 5 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16523 voxels in 1.6805 seconds minLogLikelihoodTimesPrior = 6.7112e+06 Resolution level 2 iteration 5 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.32186 voxels in 2.6665 seconds minLogLikelihoodTimesPrior = 6.7111e+06 Resolution level 2 iteration 5 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.046119 voxels in 1.6447 seconds minLogLikelihoodTimesPrior = 6.7110e+06 Resolution level 2 iteration 5 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.10252 voxels in 1.6681 seconds minLogLikelihoodTimesPrior = 6.7109e+06 Resolution level 2 iteration 5 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.097964 voxels in 1.664 seconds minLogLikelihoodTimesPrior = 6.7106e+06 Resolution level 2 iteration 5 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14655 voxels in 1.6502 seconds minLogLikelihoodTimesPrior = 6.7101e+06 Resolution level 2 iteration 5 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21659 voxels in 1.6935 seconds minLogLikelihoodTimesPrior = 6.7091e+06 Resolution level 2 iteration 5 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30078 voxels in 1.6619 seconds minLogLikelihoodTimesPrior = 6.7073e+06 Resolution level 2 iteration 5 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.58249 voxels in 1.658 seconds minLogLikelihoodTimesPrior = 6.7039e+06 Resolution level 2 iteration 5 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.0804 voxels in 1.657 seconds minLogLikelihoodTimesPrior = 6.6981e+06 Resolution level 2 iteration 5 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.90127 voxels in 2.6555 seconds minLogLikelihoodTimesPrior = 6.6933e+06 Resolution level 2 iteration 5 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.09169 voxels in 4.9228 seconds minLogLikelihoodTimesPrior = 6.6929e+06 Resolution level 2 iteration 5 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.081439 voxels in 1.6532 seconds minLogLikelihoodTimesPrior = 6.6926e+06 Resolution level 2 iteration 5 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.22937 voxels in 1.6923 seconds minLogLikelihoodTimesPrior = 6.6925e+06 Resolution level 2 iteration 5 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.086833 voxels in 1.6599 seconds minLogLikelihoodTimesPrior = 6.6924e+06 Resolution level 2 iteration 5 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.098345 voxels in 1.7498 seconds minLogLikelihoodTimesPrior = 6.6923e+06 Smoothing mesh collection with kernel size 0.000000 ...done numberOfImages = 1 Image: 0 Iteration 1 of 3 minLogLikelihood = 6.5355e+06 minLogLikelihood = 6.5343e+06 minLogLikelihood = 6.5342e+06 minLogLikelihood = 6.5341e+06 EM converged! ans = 92.4571 59.2657 75.8337 99.6502 105.2208 104.4076 104.7459 90.8494 104.9340 100.1515 40.6783 89.9825 75.4127 ans = 1.0e+05 * 0.0238 2.6874 0.0432 0.0071 0.0049 0.0009 0.0017 0.1626 0.0149 0.0544 1.1624 0.0005 0.0202 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.020494 precisions[0][0][1] = 0.001929 precisions[0][0][2] = 0.015212 precisions[0][0][3] = 0.037630 precisions[0][0][4] = 0.045292 precisions[0][0][5] = 0.103080 precisions[0][0][6] = 0.076885 precisions[0][0][7] = 0.007842 precisions[0][0][8] = 0.025907 precisions[0][0][9] = 0.013555 precisions[0][0][10] = 0.002933 precisions[0][0][11] = 0.136081 precisions[0][0][12] = 0.022236 means[0][0] = 92.457085 means[0][1] = 59.265728 means[0][2] = 75.833733 means[0][3] = 99.650215 means[0][4] = 105.220764 means[0][5] = 104.407608 means[0][6] = 104.745949 means[0][7] = 90.849373 means[0][8] = 104.934036 means[0][9] = 100.151497 means[0][10] = 40.678268 means[0][11] = 89.982468 means[0][12] = 75.412659 Resolution level 3 iteration 1 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.5 voxels in 4.8985 seconds minLogLikelihoodTimesPrior = 6.7122e+06 Resolution level 3 iteration 1 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.016143 voxels in 1.5752 seconds minLogLikelihoodTimesPrior = 6.7122e+06 Resolution level 3 iteration 1 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0042834 voxels in 1.5734 seconds minLogLikelihoodTimesPrior = 6.7122e+06 Resolution level 3 iteration 1 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0043177 voxels in 1.5641 seconds minLogLikelihoodTimesPrior = 6.7122e+06 Resolution level 3 iteration 1 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.008771 voxels in 1.5762 seconds minLogLikelihoodTimesPrior = 6.7121e+06 Resolution level 3 iteration 1 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.017336 voxels in 1.5821 seconds minLogLikelihoodTimesPrior = 6.7121e+06 Resolution level 3 iteration 1 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.033181 voxels in 1.578 seconds minLogLikelihoodTimesPrior = 6.7119e+06 Resolution level 3 iteration 1 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.063172 voxels in 1.5597 seconds minLogLikelihoodTimesPrior = 6.7117e+06 Resolution level 3 iteration 1 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.10403 voxels in 1.5733 seconds minLogLikelihoodTimesPrior = 6.7112e+06 Resolution level 3 iteration 1 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18175 voxels in 1.5713 seconds minLogLikelihoodTimesPrior = 6.7106e+06 Resolution level 3 iteration 1 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21674 voxels in 1.577 seconds minLogLikelihoodTimesPrior = 6.7104e+06 Resolution level 3 iteration 1 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.065312 voxels in 1.5992 seconds minLogLikelihoodTimesPrior = 6.7102e+06 Resolution level 3 iteration 1 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.062358 voxels in 4.6999 seconds minLogLikelihoodTimesPrior = 6.7102e+06 Resolution level 3 iteration 1 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.024741 voxels in 1.5683 seconds minLogLikelihoodTimesPrior = 6.7101e+06 Resolution level 3 iteration 1 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.032405 voxels in 1.611 seconds minLogLikelihoodTimesPrior = 6.7101e+06 Resolution level 3 iteration 1 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.027337 voxels in 1.5656 seconds minLogLikelihoodTimesPrior = 6.7100e+06 Resolution level 3 iteration 1 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.030461 voxels in 1.5926 seconds minLogLikelihoodTimesPrior = 6.7099e+06 Resolution level 3 iteration 1 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.063782 voxels in 1.5692 seconds minLogLikelihoodTimesPrior = 6.7097e+06 Resolution level 3 iteration 1 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.092431 voxels in 1.5779 seconds minLogLikelihoodTimesPrior = 6.7096e+06 Resolution level 3 iteration 1 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.092298 voxels in 1.5621 seconds minLogLikelihoodTimesPrior = 6.7094e+06 Iteration 2 of 3 minLogLikelihood = 6.5267e+06 minLogLikelihood = 6.5267e+06 EM converged! ans = 92.4576 59.2366 75.8210 99.6536 105.1682 104.4118 104.7463 90.8741 104.9534 100.1415 40.6581 89.9811 75.4137 ans = 1.0e+05 * 0.0237 2.6774 0.0431 0.0070 0.0050 0.0009 0.0017 0.1596 0.0148 0.0541 1.1577 0.0005 0.0200 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.020553 precisions[0][0][1] = 0.001933 precisions[0][0][2] = 0.015227 precisions[0][0][3] = 0.037747 precisions[0][0][4] = 0.044703 precisions[0][0][5] = 0.103255 precisions[0][0][6] = 0.077010 precisions[0][0][7] = 0.007916 precisions[0][0][8] = 0.026018 precisions[0][0][9] = 0.013596 precisions[0][0][10] = 0.002939 precisions[0][0][11] = 0.136199 precisions[0][0][12] = 0.022386 means[0][0] = 92.457626 means[0][1] = 59.236599 means[0][2] = 75.820999 means[0][3] = 99.653557 means[0][4] = 105.168159 means[0][5] = 104.411827 means[0][6] = 104.746284 means[0][7] = 90.874123 means[0][8] = 104.953415 means[0][9] = 100.141457 means[0][10] = 40.658100 means[0][11] = 89.981071 means[0][12] = 75.413696 Resolution level 3 iteration 2 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.25 voxels in 5.0121 seconds minLogLikelihoodTimesPrior = 6.7091e+06 Resolution level 3 iteration 2 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.27997 voxels in 1.5753 seconds minLogLikelihoodTimesPrior = 6.7086e+06 Resolution level 3 iteration 2 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.39596 voxels in 1.5688 seconds minLogLikelihoodTimesPrior = 6.7082e+06 Resolution level 3 iteration 2 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21571 voxels in 1.5645 seconds minLogLikelihoodTimesPrior = 6.7075e+06 Resolution level 3 iteration 2 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.36585 voxels in 1.5735 seconds minLogLikelihoodTimesPrior = 6.7067e+06 Resolution level 3 iteration 2 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.23369 voxels in 1.9362 seconds minLogLikelihoodTimesPrior = 6.7065e+06 Resolution level 3 iteration 2 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.075555 voxels in 1.6174 seconds minLogLikelihoodTimesPrior = 6.7063e+06 Resolution level 3 iteration 2 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20181 voxels in 3.1568 seconds minLogLikelihoodTimesPrior = 6.7063e+06 Resolution level 3 iteration 2 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.01235 voxels in 1.5835 seconds minLogLikelihoodTimesPrior = 6.7063e+06 Resolution level 3 iteration 2 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.018945 voxels in 1.6045 seconds minLogLikelihoodTimesPrior = 6.7063e+06 Resolution level 3 iteration 2 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.029415 voxels in 1.6314 seconds minLogLikelihoodTimesPrior = 6.7062e+06 Resolution level 3 iteration 2 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.051562 voxels in 1.6123 seconds minLogLikelihoodTimesPrior = 6.7061e+06 Resolution level 3 iteration 2 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11627 voxels in 1.5744 seconds minLogLikelihoodTimesPrior = 6.7059e+06 Resolution level 3 iteration 2 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.2018 voxels in 1.6117 seconds minLogLikelihoodTimesPrior = 6.7057e+06 Resolution level 3 iteration 2 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29306 voxels in 1.7193 seconds minLogLikelihoodTimesPrior = 6.7054e+06 Resolution level 3 iteration 2 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20674 voxels in 1.5729 seconds minLogLikelihoodTimesPrior = 6.7050e+06 Resolution level 3 iteration 2 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17845 voxels in 1.6026 seconds minLogLikelihoodTimesPrior = 6.7045e+06 Resolution level 3 iteration 2 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.33849 voxels in 1.5745 seconds minLogLikelihoodTimesPrior = 6.7040e+06 Resolution level 3 iteration 2 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29615 voxels in 1.6343 seconds minLogLikelihoodTimesPrior = 6.7032e+06 Resolution level 3 iteration 2 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.42136 voxels in 1.5727 seconds minLogLikelihoodTimesPrior = 6.7027e+06 Iteration 3 of 3 minLogLikelihood = 6.5132e+06 minLogLikelihood = 6.5131e+06 minLogLikelihood = 6.5131e+06 EM converged! ans = 92.4270 59.1264 75.7790 99.6522 105.0224 104.4342 104.7511 90.8972 105.0622 100.1778 40.6155 89.9822 75.4253 ans = 1.0e+05 * 0.0234 2.6310 0.0421 0.0067 0.0054 0.0009 0.0017 0.1522 0.0144 0.0515 1.1466 0.0005 0.0193 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.020682 precisions[0][0][1] = 0.001950 precisions[0][0][2] = 0.015409 precisions[0][0][3] = 0.038634 precisions[0][0][4] = 0.043185 precisions[0][0][5] = 0.103899 precisions[0][0][6] = 0.077137 precisions[0][0][7] = 0.008107 precisions[0][0][8] = 0.026364 precisions[0][0][9] = 0.013929 precisions[0][0][10] = 0.002953 precisions[0][0][11] = 0.136643 precisions[0][0][12] = 0.022778 means[0][0] = 92.427032 means[0][1] = 59.126411 means[0][2] = 75.779045 means[0][3] = 99.652214 means[0][4] = 105.022446 means[0][5] = 104.434219 means[0][6] = 104.751099 means[0][7] = 90.897240 means[0][8] = 105.062187 means[0][9] = 100.177780 means[0][10] = 40.615475 means[0][11] = 89.982246 means[0][12] = 75.425339 Resolution level 3 iteration 3 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.5 voxels in 4.8845 seconds minLogLikelihoodTimesPrior = 6.7022e+06 Resolution level 3 iteration 3 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13476 voxels in 1.5676 seconds minLogLikelihoodTimesPrior = 6.7018e+06 Resolution level 3 iteration 3 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.4718 voxels in 1.6769 seconds minLogLikelihoodTimesPrior = 6.7012e+06 Resolution level 3 iteration 3 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.50013 voxels in 1.5707 seconds minLogLikelihoodTimesPrior = 6.7007e+06 Resolution level 3 iteration 3 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.42449 voxels in 1.5823 seconds minLogLikelihoodTimesPrior = 6.7004e+06 Resolution level 3 iteration 3 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17333 voxels in 1.605 seconds minLogLikelihoodTimesPrior = 6.7000e+06 Resolution level 3 iteration 3 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.3835 voxels in 1.5726 seconds minLogLikelihoodTimesPrior = 6.6996e+06 Resolution level 3 iteration 3 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.4776 voxels in 1.5671 seconds minLogLikelihoodTimesPrior = 6.6996e+06 Resolution level 3 iteration 3 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.056527 voxels in 1.575 seconds minLogLikelihoodTimesPrior = 6.6995e+06 Resolution level 3 iteration 3 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.061183 voxels in 1.5601 seconds minLogLikelihoodTimesPrior = 6.6994e+06 Resolution level 3 iteration 3 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.10713 voxels in 1.5684 seconds minLogLikelihoodTimesPrior = 6.6992e+06 Resolution level 3 iteration 3 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16294 voxels in 1.603 seconds minLogLikelihoodTimesPrior = 6.6989e+06 Resolution level 3 iteration 3 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30197 voxels in 1.5735 seconds minLogLikelihoodTimesPrior = 6.6986e+06 Resolution level 3 iteration 3 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29357 voxels in 1.5872 seconds minLogLikelihoodTimesPrior = 6.6985e+06 Resolution level 3 iteration 3 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.043613 voxels in 1.5657 seconds minLogLikelihoodTimesPrior = 6.6985e+06 Resolution level 3 iteration 3 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.011073 voxels in 1.6062 seconds minLogLikelihoodTimesPrior = 6.6985e+06 Resolution level 3 iteration 3 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0078141 voxels in 1.5709 seconds minLogLikelihoodTimesPrior = 6.6985e+06 Resolution level 3 iteration 3 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.012477 voxels in 1.5722 seconds minLogLikelihoodTimesPrior = 6.6985e+06 Resolution level 3 iteration 3 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.065247 voxels in 1.5697 seconds minLogLikelihoodTimesPrior = 6.6984e+06 Resolution level 3 iteration 3 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.040819 voxels in 1.5675 seconds minLogLikelihoodTimesPrior = 6.6983e+06 Fitting mesh to image data mask took 763.0163 seconds Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points I am WriteImage and I'm running! Wrote image to file image.mgz Constructing image-to-world transform from header information (asmr1.mgz) Returning the following transform: AffineTransform (0x7faa6458f090) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 79427868 Debug: Off Observers: none Matrix: -0.5 3.35276e-08 -2.79397e-08 -9.31322e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Offset: [47.7874, -3.57872, 34.5535] Center: [0, 0, 0] Translation: [47.7874, -3.57872, 34.5535] Inverse: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Singular: 0 Constructing image-to-world transform from header information (/indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/tmp/BS_T1based/imageDump.mgz) Returning the following transform: AffineTransform (0x7faa6458f090) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 79434608 Debug: Off Observers: none Matrix: 1 0 0 0 1 0 0 0 1 Offset: [-28.9421, 4.19297, -59.1545] Center: [0, 0, 0] Translation: [-28.9421, 4.19297, -59.1545] Inverse: 1 0 0 0 1 0 0 0 1 Singular: 0 Transform before cropping: AffineTransform (0x7faa6458f090) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 79434610 Debug: Off Observers: none Matrix: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Offset: [153.459, 187.416, 15.5434] Center: [0, 0, 0] Translation: [153.459, 187.416, 15.5434] Inverse: -0.5 3.35276e-08 -2.79397e-08 -9.31323e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7faa67a8c500) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 79434612 Debug: Off Observers: none Matrix: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Offset: [95.5748, 69.107, 7.15744] Center: [0, 0, 0] Translation: [95.5748, 69.107, 7.15744] Inverse: -0.5 3.35276e-08 -2.79397e-08 -9.31323e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Singular: 0 m_BoundingBoxSize: [65, 55,93] minimalMappedCoordinate: [25.4591, 3.4161,15.5434] maximalMappedCoordinate: [153.459, 187.416,123.543] Cropping with min [13 -15 5] and max [166 206 134] m_OriginalImageRegion before checking margins: ImageRegion (0x7faa67a507c0) Dimension: 3 Index: [13, -15, 5] Size: [154, 222, 130] m_CroppedImageRegion before checking margins: ImageRegion (0x7faa67a50788) Dimension: 3 Index: [0, 0, 0] Size: [154, 222, 130] m_OriginalImageRegion after checking margins: ImageRegion (0x7faa67a507c0) Dimension: 3 Index: [13, 0, 5] Size: [154, 196, 130] m_CroppedImageRegion after checking margins: ImageRegion (0x7faa67a50788) Dimension: 3 Index: [0, 15, 0] Size: [154, 196, 130] Transform after cropping: AffineTransform (0x7faa6458f090) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 79441353 Debug: Off Observers: none Matrix: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Offset: [140.459, 202.416, 10.5434] Center: [0, 0, 0] Translation: [140.459, 202.416, 10.5434] Inverse: -0.5 3.35276e-08 -2.79397e-08 -9.31323e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7faa67a8c500) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 79441354 Debug: Off Observers: none Matrix: -2 -1.11759e-07 -1.3411e-07 7.45058e-08 -5.58793e-09 -2 -3.72529e-08 2 -1.11759e-08 Offset: [82.5748, 84.107, 2.15744] Center: [0, 0, 0] Translation: [82.5748, 84.107, 2.15744] Inverse: -0.5 3.35276e-08 -2.79397e-08 -9.31323e-09 -2.79397e-09 0.5 -1.86264e-08 -0.5 -1.39698e-09 Singular: 0 I am WriteImage and I'm running! Wrote image to file asmr2.mgz This file does not contain MRI parameters This file does not contain MRI parameters mri_convert.bin discreteLabels.mgz discreteLabelsResampledT1.mgz -rt nearest -odt float -rl /indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/mri/norm.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from discreteLabels.mgz... TR=1550.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -1.86264e-08, -3.72529e-08) j_ras = (6.70552e-08, -5.58794e-09, -1) k_ras = (-5.58794e-08, 1, -2.79397e-09) reading template info from volume /indirect/data1/vbeliveau/atlas/proc/MR/recon_final/f5249_GD/mri/norm.mgz... Reslicing using nearest writing to discreteLabelsResampledT1.mgz... Everything done! It took 902.8338 seconds