--------------------------------------------------------------------- imgreg_4dfp /usr/local/freesurfer//average/711-2C_as_mni_average_305 /usr/local/freesurfer//average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 2311 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /usr/local/freesurfer//average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /usr/local/freesurfer//average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /usr/local/freesurfer//average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /usr/local/freesurfer//average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 2311 decimal 907 hex parameters 2.3554 -7.6532 28.4179 -4.2478 -90.6575 -91.0652 2.2048 0.3412 3.0475 -95.1557 -1.2188 92.2131 eta,q 0.97990 11.67566 niter,ni,del,rscale 5 3 5.0000 0.8000 parameters 2.3531 -7.6390 28.3953 -3.1849 -90.7209 -91.0077 2.1577 0.3906 3.1362 -95.7131 -1.1524 91.7797 eta,q 0.98033 11.70671 0.0215 0.0209 0.0212 0.0223 0.0205 0.0214 0.0212 0.0223 0.0207 0.0221 0.0207 0.0210 0.0207 0.0205 0.0206 0.0215 0.0202 0.0206 0.0205 0.0210 0.0202 0.0203 0.0202 0.0202 0.0203 0.0202 0.0202 0.0207 0.0199 0.0201 0.0200 0.0202 0.0200 0.0196 0.0198 0.0198 0.0201 0.0201 0.0201 0.0201 0.0199 0.0199 0.0199 0.0199 0.0199 0.0199 0.0197 0.0197 0.0203 0.0202 0.0202 0.0198 0.0200 0.0200 0.0200 0.0201 0.0200 0.0207 0.0198 0.0200 0.0207 0.0204 0.0206 0.0202 0.0202 0.0205 0.0205 0.0209 0.0202 0.0216 0.0201 0.0206 0.0215 0.0209 0.0212 0.0212 0.0206 0.0213 0.0213 0.0222 0.0206 0.0226 0.0207 0.0215 niter,ni,del,rscale 4 3 5.0000 0.7000 parameters 2.3483 -7.6817 28.4168 -3.2009 -90.4238 -91.0772 2.1598 0.4079 3.1769 -96.0143 -1.1725 91.6961 eta,q 0.98041 11.71163 0.0209 0.0204 0.0206 0.0212 0.0203 0.0208 0.0207 0.0216 0.0203 0.0218 0.0204 0.0208 0.0202 0.0200 0.0201 0.0205 0.0200 0.0202 0.0202 0.0206 0.0200 0.0203 0.0199 0.0201 0.0198 0.0197 0.0198 0.0200 0.0198 0.0198 0.0198 0.0199 0.0197 0.0196 0.0197 0.0197 0.0197 0.0197 0.0197 0.0197 0.0197 0.0197 0.0197 0.0197 0.0197 0.0197 0.0196 0.0196 0.0198 0.0198 0.0198 0.0198 0.0197 0.0198 0.0198 0.0199 0.0197 0.0203 0.0197 0.0197 0.0202 0.0200 0.0200 0.0204 0.0199 0.0202 0.0201 0.0206 0.0200 0.0211 0.0200 0.0202 0.0209 0.0205 0.0205 0.0215 0.0201 0.0209 0.0207 0.0216 0.0203 0.0220 0.0204 0.0209 niter,ni,del,rscale 3 3 5.0000 0.6000 parameters 2.3504 -7.7138 28.4216 -3.1519 -90.3070 -91.1486 2.1779 0.4249 3.1883 -96.2178 -1.1984 91.6315 eta,q 0.98045 11.71557 0.0205 0.0201 0.0202 0.0208 0.0200 0.0205 0.0204 0.0211 0.0201 0.0214 0.0201 0.0204 0.0200 0.0198 0.0199 0.0203 0.0198 0.0200 0.0200 0.0203 0.0198 0.0202 0.0198 0.0200 0.0197 0.0196 0.0197 0.0198 0.0196 0.0197 0.0197 0.0198 0.0196 0.0196 0.0196 0.0197 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0195 0.0195 0.0197 0.0197 0.0197 0.0196 0.0196 0.0197 0.0197 0.0197 0.0196 0.0201 0.0196 0.0197 0.0200 0.0199 0.0199 0.0201 0.0198 0.0200 0.0199 0.0203 0.0198 0.0207 0.0198 0.0200 0.0205 0.0202 0.0202 0.0209 0.0200 0.0206 0.0204 0.0211 0.0201 0.0215 0.0202 0.0205 niter,ni,del,rscale 2 3 5.0000 0.5000 parameters 2.3487 -7.7409 28.4198 -3.0907 -90.2498 -91.2099 2.1919 0.4308 3.1765 -96.3798 -1.2027 91.5732 eta,q 0.98048 11.71876 0.0202 0.0199 0.0200 0.0205 0.0198 0.0202 0.0201 0.0206 0.0199 0.0209 0.0199 0.0202 0.0198 0.0197 0.0197 0.0200 0.0197 0.0198 0.0198 0.0200 0.0197 0.0200 0.0197 0.0198 0.0196 0.0196 0.0196 0.0197 0.0196 0.0196 0.0196 0.0197 0.0196 0.0196 0.0196 0.0196 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0197 0.0196 0.0199 0.0196 0.0196 0.0198 0.0198 0.0197 0.0199 0.0197 0.0199 0.0198 0.0200 0.0197 0.0204 0.0197 0.0198 0.0202 0.0200 0.0200 0.0205 0.0198 0.0202 0.0201 0.0206 0.0199 0.0210 0.0199 0.0202 niter,ni,del,rscale 1 3 5.0000 0.4000 parameters 2.3485 -7.7674 28.4134 -3.0489 -90.2153 -91.2656 2.1940 0.4282 3.1680 -96.5153 -1.2144 91.5399 eta,q 0.98049 11.72147 0.0199 0.0198 0.0198 0.0201 0.0197 0.0199 0.0199 0.0202 0.0198 0.0204 0.0198 0.0199 0.0197 0.0196 0.0196 0.0198 0.0196 0.0197 0.0197 0.0198 0.0196 0.0198 0.0196 0.0197 0.0196 0.0195 0.0196 0.0196 0.0195 0.0196 0.0196 0.0196 0.0196 0.0196 0.0195 0.0196 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0196 0.0196 0.0196 0.0196 0.0195 0.0196 0.0196 0.0196 0.0195 0.0197 0.0195 0.0196 0.0197 0.0197 0.0197 0.0198 0.0196 0.0197 0.0197 0.0198 0.0196 0.0201 0.0196 0.0197 0.0199 0.0198 0.0198 0.0201 0.0197 0.0200 0.0199 0.0202 0.0198 0.0205 0.0198 0.0200 registration optimization eta report parameter search radius 0.8000 0.8000 0.8000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 100000*second partial in parameter space 66. 43. 46. 11. 3. 7. 6. 13. 4. 17. 5. 8. 0.0199 0.0198 0.0198 0.0201 0.0197 0.0199 0.0199 0.0202 0.0198 0.0204 0.0198 0.0199 0.0197 0.0196 0.0196 0.0198 0.0196 0.0197 0.0197 0.0198 0.0196 0.0198 0.0196 0.0197 0.0196 0.0195 0.0196 0.0196 0.0195 0.0196 0.0196 0.0196 0.0196 0.0196 0.0195 0.0196 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0196 0.0196 0.0196 0.0196 0.0195 0.0196 0.0196 0.0196 0.0195 0.0197 0.0195 0.0196 0.0197 0.0197 0.0197 0.0198 0.0196 0.0197 0.0197 0.0198 0.0196 0.0201 0.0196 0.0197 0.0199 0.0198 0.0198 0.0201 0.0197 0.0200 0.0199 0.0202 0.0198 0.0205 0.0198 0.0200 2.3485 -7.7674 28.4134 -3.0489 -90.2153 -91.2656 2.1940 0.4282 3.1680 -96.5153 -1.2144 91.5399 eta,q 0.98049 11.72147 --------------------------------------------------------------------- imgreg_4dfp /usr/local/freesurfer//average/711-2C_as_mni_average_305 /usr/local/freesurfer//average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 2311 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /usr/local/freesurfer//average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /usr/local/freesurfer//average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /usr/local/freesurfer//average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /usr/local/freesurfer//average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 2311 decimal 907 hex parameters 2.3485 -7.7674 28.4134 -3.0489 -90.2153 -91.2656 2.1940 0.4282 3.1680 -96.5153 -1.2144 91.5399 eta,q 0.98049 11.72147 niter,ni,del,rscale 5 3 5.0000 0.8000 parameters 2.3529 -7.8003 28.4117 -3.4926 -90.2240 -91.3412 2.2163 0.4135 3.1346 -96.1286 -1.2746 91.7668 eta,q 0.98039 11.70903 0.0212 0.0206 0.0207 0.0212 0.0203 0.0211 0.0209 0.0221 0.0204 0.0235 0.0206 0.0213 0.0203 0.0200 0.0200 0.0204 0.0199 0.0203 0.0202 0.0208 0.0199 0.0213 0.0201 0.0205 0.0197 0.0196 0.0196 0.0198 0.0196 0.0197 0.0197 0.0199 0.0196 0.0199 0.0197 0.0199 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0196 0.0196 0.0197 0.0196 0.0196 0.0198 0.0196 0.0197 0.0197 0.0198 0.0196 0.0201 0.0197 0.0197 0.0203 0.0200 0.0200 0.0207 0.0199 0.0203 0.0202 0.0208 0.0200 0.0210 0.0201 0.0202 0.0212 0.0207 0.0207 0.0223 0.0203 0.0212 0.0209 0.0221 0.0205 0.0220 0.0207 0.0210 niter,ni,del,rscale 4 3 5.0000 0.7000 parameters 2.3498 -7.7379 28.3982 -3.3234 -90.4527 -91.2789 2.2301 0.4108 3.1337 -96.1055 -1.2436 91.7296 eta,q 0.98041 11.71117 0.0208 0.0205 0.0205 0.0212 0.0201 0.0209 0.0206 0.0216 0.0203 0.0222 0.0204 0.0208 0.0201 0.0200 0.0200 0.0205 0.0198 0.0202 0.0201 0.0205 0.0199 0.0206 0.0199 0.0202 0.0197 0.0197 0.0197 0.0200 0.0196 0.0197 0.0197 0.0198 0.0197 0.0197 0.0197 0.0197 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0197 0.0197 0.0197 0.0196 0.0197 0.0197 0.0197 0.0198 0.0197 0.0201 0.0197 0.0197 0.0202 0.0199 0.0200 0.0201 0.0199 0.0201 0.0201 0.0205 0.0199 0.0209 0.0199 0.0202 0.0208 0.0203 0.0205 0.0212 0.0202 0.0208 0.0206 0.0216 0.0203 0.0218 0.0204 0.0209 niter,ni,del,rscale 3 3 5.0000 0.6000 parameters 2.3455 -7.7356 28.3972 -3.1868 -90.4209 -91.2379 2.2127 0.4123 3.1484 -96.2305 -1.2168 91.6544 eta,q 0.98045 11.71517 0.0205 0.0202 0.0202 0.0208 0.0200 0.0205 0.0204 0.0211 0.0201 0.0215 0.0202 0.0204 0.0200 0.0198 0.0199 0.0203 0.0198 0.0200 0.0199 0.0203 0.0198 0.0202 0.0198 0.0200 0.0197 0.0197 0.0197 0.0198 0.0196 0.0197 0.0197 0.0198 0.0196 0.0196 0.0196 0.0197 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0195 0.0195 0.0197 0.0196 0.0197 0.0196 0.0196 0.0197 0.0197 0.0197 0.0196 0.0200 0.0196 0.0197 0.0200 0.0198 0.0199 0.0200 0.0198 0.0200 0.0199 0.0203 0.0198 0.0207 0.0198 0.0200 0.0205 0.0202 0.0202 0.0208 0.0200 0.0205 0.0204 0.0211 0.0201 0.0214 0.0201 0.0205 niter,ni,del,rscale 2 3 5.0000 0.5000 parameters 2.3460 -7.7496 28.4017 -3.1036 -90.3292 -91.2524 2.2013 0.4174 3.1602 -96.3798 -1.2092 91.5952 eta,q 0.98048 11.71884 0.0202 0.0200 0.0200 0.0205 0.0199 0.0202 0.0201 0.0206 0.0199 0.0209 0.0199 0.0202 0.0198 0.0197 0.0198 0.0200 0.0197 0.0198 0.0198 0.0200 0.0197 0.0200 0.0197 0.0198 0.0196 0.0196 0.0196 0.0197 0.0196 0.0196 0.0196 0.0197 0.0196 0.0196 0.0196 0.0196 0.0195 0.0195 0.0196 0.0196 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0196 0.0197 0.0196 0.0199 0.0196 0.0196 0.0198 0.0197 0.0197 0.0199 0.0197 0.0198 0.0198 0.0200 0.0197 0.0204 0.0197 0.0198 0.0202 0.0200 0.0200 0.0205 0.0198 0.0202 0.0201 0.0206 0.0199 0.0210 0.0199 0.0202 niter,ni,del,rscale 1 3 5.0000 0.4000 parameters 2.3448 -7.7697 28.4022 -3.0464 -90.2589 -91.2875 2.1997 0.4203 3.1524 -96.5125 -1.2193 91.5503 eta,q 0.98050 11.72171 0.0199 0.0198 0.0198 0.0201 0.0197 0.0199 0.0199 0.0202 0.0198 0.0204 0.0198 0.0199 0.0197 0.0196 0.0197 0.0198 0.0196 0.0197 0.0197 0.0199 0.0196 0.0199 0.0196 0.0197 0.0196 0.0195 0.0196 0.0196 0.0195 0.0196 0.0196 0.0196 0.0195 0.0195 0.0195 0.0196 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0196 0.0196 0.0196 0.0196 0.0195 0.0196 0.0196 0.0196 0.0195 0.0197 0.0195 0.0196 0.0197 0.0197 0.0197 0.0198 0.0196 0.0197 0.0197 0.0198 0.0196 0.0201 0.0196 0.0197 0.0199 0.0198 0.0198 0.0201 0.0197 0.0200 0.0199 0.0202 0.0198 0.0205 0.0198 0.0200 registration optimization eta report parameter search radius 0.8000 0.8000 0.8000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 100000*second partial in parameter space 66. 43. 46. 11. 3. 7. 6. 13. 4. 17. 5. 8. 0.0199 0.0198 0.0198 0.0201 0.0197 0.0199 0.0199 0.0202 0.0198 0.0204 0.0198 0.0199 0.0197 0.0196 0.0197 0.0198 0.0196 0.0197 0.0197 0.0199 0.0196 0.0199 0.0196 0.0197 0.0196 0.0195 0.0196 0.0196 0.0195 0.0196 0.0196 0.0196 0.0195 0.0195 0.0195 0.0196 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0195 0.0196 0.0196 0.0196 0.0196 0.0195 0.0196 0.0196 0.0196 0.0195 0.0197 0.0195 0.0196 0.0197 0.0197 0.0197 0.0198 0.0196 0.0197 0.0197 0.0198 0.0196 0.0201 0.0196 0.0197 0.0199 0.0198 0.0198 0.0201 0.0197 0.0200 0.0199 0.0202 0.0198 0.0205 0.0198 0.0200 2.3448 -7.7697 28.4022 -3.0464 -90.2589 -91.2875 2.1997 0.4203 3.1524 -96.5125 -1.2193 91.5503 eta,q 0.98050 11.72171 --------------------------------------------------------------------- compute_vox2vox talsrcimg talsrcimg_to_711-2C_as_mni_average_305_t4 /usr/local/freesurfer//average/711-2C_as_mni_average_305 --------------------------------------------------------------------- $Id: compute_vox2vox.c,v 1.2 2007/05/05 00:00:06 nicks Exp $ Reading: talsrcimg.4dfp.ifh Reading: talsrcimg_to_711-2C_as_mni_average_305_t4 Reading: /usr/local/freesurfer//average/711-2C_as_mni_average_305.4dfp.ifh Writing: talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt start time Thu Jun 18 10:05:08 CEST 2009 end time Thu Jun 18 10:06:28 CEST 2009 mpr2mni305 success -------------------------------------------- tkregister2_cmdl --mov nu.mgz --targ /usr/local/freesurfer//average/mni305.cor.mgz --xfmout transforms/talairach.auto.xfm --vox2vox talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt --noedit --reg talsrcimg.reg.tmp.dat tkregister_tcl /usr/local/freesurfer//lib/tcl/tkregister2.tcl Vox2Vox Matrix 0.970 0.022 -0.004 -0.727; 0.032 0.097 0.965 -3.305; 0.012 -0.916 0.087 259.961; 0.000 0.000 0.000 1.000; target volume /usr/local/freesurfer//average/mni305.cor.mgz movable volume nu.mgz reg file talsrcimg.reg.tmp.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.86.2.12 2009/03/19 22:04:20 greve Exp $ Diagnostic Level -1 INFO: loading target /usr/local/freesurfer//average/mni305.cor.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable nu.mgz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.970 0.004 0.022 2.349; -0.012 0.087 0.916 27.489; 0.032 -0.965 0.097 -8.735; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.970 0.004 0.022 2.349; -0.012 0.087 0.916 27.489; 0.032 -0.965 0.097 -8.735; 0.000 0.000 0.000 1.000; Determinant 0.865211 subject = subject-unknown RegMat --------------------------- 0.970 0.004 0.022 2.349; -0.012 0.087 0.916 27.489; 0.032 -0.965 0.097 -8.735; 0.000 0.000 0.000 1.000; register: file talsrcimg.reg.tmp.dat written `talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt' -> `transforms/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt' removed `talsrcimg.4dfp.hdr' removed `talsrcimg.4dfp.ifh' removed `talsrcimg.4dfp.img' removed `talsrcimg.4dfp.img.rec' removed `talsrcimg.hdr' removed `talsrcimg.img' removed `talsrcimg.mat' removed `talsrcimg.reg.tmp.dat' removed `talsrcimg_g11.4dfp.hdr' removed `talsrcimg_g11.4dfp.ifh' removed `talsrcimg_g11.4dfp.img' removed `talsrcimg_g11.4dfp.img.rec' removed `talsrcimg_to_711-2C_as_mni_average_305_t4' -------------------------------------------- Thu Jun 18 10:06:30 CEST 2009 talairach_avi done #-------------------------------------------- #@# Talairach Failure Detection Thu Jun 18 10:06:30 CEST 2009 /usr/local/freesurfer/subjects/hove/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux pall-desktop 2.6.27-11-generic #1 SMP Thu Jan 29 19:24:39 UTC 2009 i686 GNU/Linux recon-all exited with ERRORS at Thu Jun 18 10:06:30 CEST 2009 pall-desktop:/usr/local/freesurfer/subjects/hove/mri>