Hi Ani,

sorry for the slow response (Easter...).

The script should be in $FREESURFER_HOME/bin, which is automatically added to your path when you source FreeSurfer.

Cheers,

/Eugenio

Juan Eugenio Iglesias

Translational Imaging Group

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Anik Dar <aniqa4pm@gmail.com>
Sent: Thursday, March 29, 2018 9:26:45 PM
To: Freesurfer support list
Subject: [Freesurfer] which dev version for amygdala segmentation

Hi All,

How do I download reqd. files / FS developmental version to run hippocampal/amygdala pipeline as described in the wiki

https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala

I tried downloading the el capitan version of the development version of freesurfer from the

https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall

and I cant find any code segmentHA_T1.sh

Can anyone help,

Thanks

Ani