Hi all,
I am trying again to perform Surface-based Interhemispheric Registration
in another computer (same version of FS 5.0) and by building my own atlas.
However, there is an error while running xhemireg command (please find the
log attached).

I also noted that the command xhemireg took a lot of time to run (more
than 30 min) while you wrote on the wiki that it would take a few minutes
to finish.

If anyone can give some hints it would be great

thank you

Angela

>
>
> I'm not sure why this is failing. Are there other things in the xhemi
> folder? What version of FS are you using?
> doug
>
> On 07/01/2014 11:06 AM, angela.favaro@unipd.it wrote:
>> sure! thank you
>>
>>
>>> Can you send the log file (or the full terminal output)?
>>> On 06/30/2014 03:11 PM, angela.favaro@unipd.it wrote:
>>>> Hi all,
>>>> I have a problem with 'Surface-based Interhemispheric Registration'
>>>>
>>>> I followed the instructions and all seem to work, but the command:
>>>> 'surfreg --s $subject --t fsaverage_sym --lh --xhemi'
>>>>
>>>> finish with the error below
>>>> (indeed in the xhemi/label directory, there is no file)
>>>>
>>>> What can I do?
>>>> Thank you for any help!
>>>> Angela
>>>>
>>>> #@# Cortical Parc rh Mon Jun 30 17:44:52 CEST 2014
>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj024/xhemi/scripts
>>>> \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz
>>>> -seed
>>>> 1234 subj024/xhemi rh ../surf/rh.sphere.reg
>>>> /Applications/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
>>>> ../label/rh.aparc.annot \n
>>>> No such file or directory
>>>> mris_ca_label: could not open label file ../label/rh.cortex.label
>>>> No such file or directory
>>>>
>>>> No such file or directory
>>>> Darwin host-001.homenet.telecomitalia.it 10.8.0 Darwin Kernel Version
>>>> 10.8.0: Tue Jun  7 16:33:36 PDT 2011;
>>>> root:xnu-1504.15.3~1/RELEASE_I386
>>>> i386
>>>>
>>>> recon-all -s subj024/xhemi exited with ERRORS at Mon Jun 30 17:44:52
>>>> CEST
>>>> 2014
>>>>
>>>>
>>>>
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>>>>
>>>>
>>> --
>>> Douglas N. Greve, Ph.D.
>>> MGH-NMR Center
>>> greve@nmr.mgh.harvard.edu
>>> Phone Number: 617-724-2358
>>> Fax: 617-726-7422
>>>
>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>> Outgoing:
>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>>
>>> _______________________________________________
>>> Freesurfer mailing list
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>>>
>>>
>>> The information in this e-mail is intended only for the person to whom
>>> it
>>> is
>>> addressed. If you believe this e-mail was sent to you in error and the
>>> e-mail
>>> contains patient information, please contact the Partners Compliance
>>> HelpLine at
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>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>

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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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