Reading /usr/local/freesurfer/lib/tcl/tkUtils.tcl Using /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl Loading data table qdec.table.dat... Number of columns: 4 fsid column: 1 Number of factors: 3 Number of subjects: 59 Reading discrete factor levels from config file ./sex.levels 'Male','Female', done Reading discrete factor levels from config file ./diagnosis.levels 'HP','MD','DX', done Data table qdec.table.dat loaded. sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n001_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d20' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n003_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_dd01' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n004_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d02' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n005_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_dd07' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n009_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_dd30' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n011_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_dd15' in SUBJECTS_DIR sh: Syntax error: Bad fd number sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n012_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_19' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n013_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d21' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n014_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d28' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n015_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d22' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n016_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d10' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n017_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d11' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n019_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d16' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n020_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_dd04' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n021_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d14' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n022_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_dd24' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n023_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d27' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n051_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d25' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n054_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_dd17' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n008_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_dd05' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'HP_n010_3_a' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'MD_d31' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx19-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx15-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx09-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx16-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx01-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx11-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx06-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx10-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx13-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx08-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx14-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx18-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx07-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx05-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx02-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx03-3D' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'dx12-3D' in SUBJECTS_DIR Input table: qdec.table.dat Subject #, Subject ID, Factor Data... 0 HP_n001_3_a Male 33.000000 HP 1 MD_d20 Male 36.000000 MD 2 HP_n003_3_a Male 30.000000 HP 3 MD_dd01 Male 28.000000 MD 4 HP_n004_3_a Male 23.000000 HP 5 MD_d02 Male 23.000000 MD 6 HP_n005_3_a Male 24.000000 HP 7 MD_dd07 Male 24.000000 MD 8 HP_n009_3_a Male 19.000000 HP 9 MD_dd30 Male 22.000000 MD 10 HP_n011_3_a Female 26.000000 HP 11 MD_dd15 Female 26.000000 MD 12 HP_n012_3_a Female 28.000000 HP 13 MD_19 Female 35.000000 MD 14 HP_n013_3_a Female 23.000000 HP 15 MD_d21 Female 24.000000 MD 16 HP_n014_3_a Male 32.000000 HP 17 MD_d28 Male 27.000000 MD 18 HP_n015_3_a Female 23.000000 HP 19 MD_d22 Female 24.000000 MD 20 HP_n016_3_a Female 21.000000 HP 21 MD_d10 Female 19.000000 MD 22 HP_n017_3_a Female 21.000000 HP 23 MD_d11 Female 21.000000 MD 24 HP_n019_3_a Female 25.000000 HP 25 MD_d16 Female 20.000000 MD 26 HP_n020_3_a Male 23.000000 HP 27 MD_dd04 Male 25.000000 MD 28 HP_n021_3_a Female 19.000000 HP 29 MD_d14 Female 19.000000 MD 30 HP_n022_3_a Male 23.000000 HP 31 MD_dd24 Male 23.000000 MD 32 HP_n023_3_a Male 23.000000 HP 33 MD_d27 Male 24.000000 MD 34 HP_n051_3_a Female 19.000000 HP 35 MD_d25 Female 19.000000 MD 36 HP_n054_3_a Female 18.000000 HP 37 MD_dd17 Female 18.000000 MD 38 HP_n008_3_a Male 19.000000 HP 39 MD_dd05 Male 21.000000 MD 40 HP_n010_3_a Female 28.000000 HP 41 MD_d31 Female 26.000000 DX 42 dx19-3D Male 20.000000 DX 43 dx15-3D Female 29.000000 DX 44 dx09-3D Male 18.000000 DX 45 dx16-3D Female 43.000000 DX 46 dx01-3D Male 21.000000 DX 47 dx11-3D Female 26.000000 DX 48 dx06-3D Male 18.000000 DX 49 dx10-3D Male 26.000000 DX 50 dx13-3D Female 38.000000 DX 51 dx08-3D Male 32.000000 DX 52 dx14-3D Male 37.000000 DX 53 dx18-3D Female 31.000000 DX 54 dx07-3D Male 21.000000 DX 55 dx05-3D Female 21.000000 DX 56 dx02-3D Female 19.000000 DX 57 dx03-3D Male 22.000000 DX 58 dx12-3D Male 32.000000 DX 1 sex discrete 2 1 Male 2 Female 2 age continuous 0 3 diagnosis discrete 3 1 HP 2 MD 3 DX Continuous Factors: Mean: StdDev: ------------------- ----- ------- age 24.712 5.690 Number of subjects: 59 Number of factors: 3 (2 discrete, 1 continuous) Number of classes: 6 Number of regressors: 12 ============================================================ SUBJECTS_DIR is '/mnt/F_data/Data_MDD/processed_data' ERROR: QdecGlmDesign::GenerateContrasts: factor 2 must have 2 levels ninputs = 59 Checking inputs nframestot = 59 Allocing output nframes = 59 Writing to /mnt/F_data/Data_MDD/processed_data/qdec/Untitled/y.mgh gdfReadHeader: reading /mnt/F_data/Data_MDD/processed_data/qdec/Untitled/qdec.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 age 24.7119 Class Means of each Continuous Variable 1 sexMale-diagnosisHP 24.9000 2 sexFemale-diagnosisHP 22.8182 3 sexMale-diagnosisMD 25.3000 4 sexFemale-diagnosisMD 22.5000 5 sexMale-diagnosisDX 24.7000 6 sexFemale-diagnosisDX 29.1250 INFO: gd2mtx_method is dods Reading source surface /mnt/F_data/Data_MDD/processed_data/fsaverage/surf/lh.white reading group avg surface area 822 cm^2 from file Reading in average area /mnt/F_data/Data_MDD/processed_data/fsaverage/surf/lh.white.avg.area.mgh ERROR: no contrasts specified. Error in Analyze: command failed: mri_glmfit --y /mnt/F_data/Data_MDD/processed_data/qdec/Untitled/y.mgh --fsgd /mnt/F_data/Data_MDD/processed_data/qdec/Untitled/qdec.fsgd dods --glmdir /mnt/F_data/Data_MDD/processed_data/qdec/Untitled --surf fsaverage lh --label /mnt/F_data/Data_MDD/processed_data/fsaverage/label/lh.cortex.label