sorry, I don't understand. What was the error? I don't see one in this email. Can you send us the actual screen output?

cheers
Bruce

On Thu, 7 Mar 2013, Xiaowei Song wrote:

This error may come from regio_read_mincxfm function in registerio.c.Does
this mean something wrong in recon-all?

I forgot to mention that FreeSurfer version is
 freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0


On Thu, Mar 7, 2013 at 5:34 PM, Xiaowei Song <dawnwei.song@gmail.com> wrote:
      Hi all,

Did you encounter the error message talairach.m3z does not start as
'MNI Transform File' when making average of subjects?

I checked all the recon-all.log file and did not find error, but when
running make_average_subject after recon-all, then this error shoot.

To repeat the error message, I tried the following command which is
called by make_average_subject and found all my subjects shoot this
error.

mri_vol2vol --mov 1173622/mri/aseg.mgz --targ
/usr/local/freesurfer/average/mni305.cor.mgz --xfm
 1173622/mri/transforms/talairach.m3z --o
/tmp/make_average_vol-tmp-164320_seg-1173622.mgh --interp nearest

I found another same question asked before, but noanswer. https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-May/024
064.html

Any hint or help will be appreciated. Thank you.

--
Xiaowei Song 




--
Xiaowei Song 

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