FS
experts,
The aim of this mail is
about some errors I had encountered when I try to generate a
table from some *.stats files obtained after a longitudinal
analysis.
After running the command :
long_stats_slopes
--qdec ./qdec/longi_presentacio.qdec.table.dat --stats
aseg.stats --meas volume --do-avg --do-rate --do-pc1
--time years
(with no errors during the
execution), I would like to extract and put together all the
longitudinal aseg.stats files of rate and/or pc1 of my
subjects.
I had tried to run the
command
asegstats2table
--subjects $subjectes_table
--statsfile=long.aseg.stats.volume-rate.dat --meas volume
--tablefile aseg_stats_longi.txt
where $subjects is the list
of subjects I want to focus.
However, an error appears
after running this command:
Parsing the .stats files
Traceback (most recent call last):
File
"/usr/local/freesurfer/bin/asegstats2table", line 494, in
<module>
id_name_map, measurelist =
parsed.parse(options.meas)
File
"/usr/local/freesurfer/bin/fsutils.py", line 117, in parse
self.measurelist.append(
float(strlst[self.measure_column_map[measure]] ))
ValueError: could not convert string to float:
Left-Cerebellum-White-Matter
I do not know if the problem is genereted on the
long_stats_slopes command or during the asegstat2table
execution.
Thanks in advance for your attencion and help!
Bests,
Victor