After reviewing and manually editing the recon-all outputs in freeview, I'm going to re-run the recon-all command with the autorecon-pial flag. My question is, does the autorecon-pial also take into account the T2w image or does it only consider the T1w image?. In case of not considering both images (T1w and T2w), is there a way to run the autorecon-pial with both images in order to get a more accurate pial surface segmentation?

Thank you very much in advance.

Best regards,