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Hi Freesurfers,

 

I’m trying to project the surface, a fine-grained parcellation (?h.250.aparc.annot), into volume space (dti_FA) with

 

for subj in SPN01*; do

    if [ -d "${subj}" ];

    then

        cd $subj/

mri_surf2vol \

--o FA/annot2FA.nii.gz \

--subject $subj \

--so $SUBJECTS_DIR/$subj/label/lh.250.aparc.annot $dtipath/$subj/dti_FA.nii.gz

                 cd ../

                fi

done

 

However, I get ERROR: MRISread: file ‘$SUBJECTS_DIR/$subj/label/lh.250.aparc.annot’ has more faces than vertices!

How can I solve this?

 

Thanks,

Stephanie

 

Stephanie Winkelbeiner, MSc

Research Coordinator

Psychiatry Research

Zucker Hillside Hospital

75-59 263 Street

Glen Oaks, NY 11004

Tel: (718) 470-4588

Email: swinkelbei@northwell.edu

 

Northwell Health

Visit us at Northwell.edu

 


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