Yes, this probably has to do with SIP being enabled, which blocks libraries stored in /usr. This was a pretty common issue that people had with v6. You can try disabling SIP via http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-mac-os-x

 

best

Andrew

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Costanza Parodi <costanza.bianca.parodi@gmail.com>
Date: Friday, February 5, 2021 at 9:30 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Lazy_symbol_error libstdc++.6.dylib: stable Version 6 Release

        External Email - Use Caution        

Hello Freesurfer Developers,

 

I was attempting to use the mri_cvs_register command ( mri_cvs_register -- mov subjid  -- mni) and I received this error:

 

asegfname aseg

Using m3z type morph files.

dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address

  Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib

  Expected in: /usr/lib/libSystem.B.dylib

 

dyld: Symbol not found: ___emutls_get_address

  Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib

  Expected in: /usr/lib/libSystem.B.dylib

 

Abort 



I resolved the issue by downloading the Freeview_6.0.0_MacOS patch, but a new error came up :

 

 Error opening file dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address

  Referenced from: /Volumes/NAME/Applications/freesurfer/bin/../lib/gcc/lib/libstdc++.6.dylib

  Expected in: /usr/lib/libSystem.B.dylib

 

dyld: Symbol not found: ___emutls_get_address

  Referenced from: /Volumes/NAME/Applications/freesurfer/bin/../lib/gcc/lib/libstdc++.6.dylib

  Expected in: /usr/lib/libSystem.B.dylib

 

I did not find similar errors in the archive. Should I disable SIP? Could you help me trouble-shoot this error? 

My freesurfer is installed on an external hard disk and I am processing my subjects on my Mac desktop. 

 

1) Freesurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c

2) MacOs High Sierra version 10.13.6

3)Darwin MacBook-Air.local 17.7.0 Darwin Kernel Version 17.7.0: Thu Jun 18 21:21:34 PDT 2020; root:xnu-4570.71.82.5~1/RELEASE_X86_64 x86_64

4)Xquartz 2.7.11