Hi, you were able to use freeview before without it crashing – have you made any changes to the distribution since then? Are you sure that you’ve set FREESURFER_HOME and sourced the FS environment before calling
freeview?
Andrew
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Lykke Silfwerbrand <lykke.silfwerbrand@neuro.uu.se>
Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, February 14, 2019 at 10:59 AM
To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Unexpected termination of freeviewer
External Email - Use Caution
Hi,
I used freeviewer a few weeks ago without any problems, but now that I want to continue my analysis it terminates as a try to load a volume or a surface. (same computer, same setting)
I have tried the “sudo -E fs_update” and to disable SIP, freeviewer still terminates the same way with the same error message, see below.
Any help is much appreciated!
Lykke
PhD candidate
Neuro Science
Uppsala University
Process: Freeview [1713]
Path: /Applications/freesurfer/Freeview.app/Contents/MacOS/Freeview
Identifier: com.yourcompany.Freeview
Version: ???
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: Freeview [1713]
User ID: 271794372
Date/Time: 2019-02-14 16:48:18.395 +0100
OS Version: Mac OS X 10.14.3 (18D109)
Report Version: 12
Bridge OS Version: 3.0 (14Y674)
Anonymous UUID: A7073C18-5895-3A14-4551-409200FFED72
Time Awake Since Boot: 2500 seconds
System Integrity Protection: disabled
Crashed Thread: 9
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Termination Reason: DYLD, [0x4] Symbol missing
Dyld Error Message:
Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/Freeview.app/Contents/MacOS/../Frameworks/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
Thread 0:: Dispatch queue: com.apple.main-thread
0 libobjc.A.dylib 0x00007fff6605e681 search_method_list(method_list_t const*, objc_selector*) + 78
1 libobjc.A.dylib 0x00007fff6605e614 getMethodNoSuper_nolock(objc_class*, objc_selector*) + 98
2 libobjc.A.dylib 0x00007fff66060a73 lookUpImpOrForward + 328
3 libobjc.A.dylib 0x00007fff66060494 _objc_msgSend_uncached + 68
4 com.apple.AppKit 0x00007fff3747e426 -[NSView(NSInternal) _allocAuxiliary] + 227
5 com.apple.AppKit 0x00007fff374b241c -[NSView initWithFrame:] + 36
6 com.apple.AppKit 0x00007fff374bd14f -[NSNextStepFrame initWithFrame:styleMask:owner:] + 74
7 com.apple.AppKit 0x00007fff374bb709 -[NSWindow _commonInitFrame:styleMask:backing:defer:] + 610
8 com.apple.AppKit 0x00007fff374baf5e -[NSWindow _initContent:styleMask:backing:defer:contentView:] + 1202
9 com.apple.AppKit 0x00007fff374baaa6 -[NSWindow initWithContentRect:styleMask:backing:defer:] + 45
10 QtGui 0x0000000120ba003f QMacInputContext::reset() + 30319
11 QtGui 0x0000000120b9fedc QMacInputContext::reset() + 29964
12 QtGui 0x0000000120b9289a QWidgetPrivate::setWindowLevel() + 810
13 QtGui 0x0000000120b8ffb1 QWidgetPrivate::createWindow_sys() + 145
14 QtGui 0x0000000120b900bf qt_mac_window_for(QWidget const*) + 159
15 QtGui 0x0000000120b923b1 QWidgetPrivate::setModal_sys() + 145
16 QtGui 0x0000000120c4b698 QWidget::create(long, bool, bool) + 360
17 QtGui 0x0000000120c4c909 QWidget::setVisible(bool) + 121
18 com.yourcompany.Freeview 0x000000010fe7241c FloatingStatusBar::ShowProgress() + 60
19 com.yourcompany.Freeview 0x000000010fe26aab FloatingStatusBar::qt_metacall(QMetaObject::Call, int, void**) + 251
20 QtCore 0x00000001208ede99 QObject::event(QEvent*) + 1081
21 QtGui 0x0000000120c4d83e QWidget::event(QEvent*) + 78
22 QtGui 0x0000000120bf315d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 189
23 QtGui 0x0000000120bf918d QApplication::notify(QObject*, QEvent*) + 349
24 QtCore 0x00000001207f34dc QCoreApplication::notifyInternal(QObject*, QEvent*) + 124
25 QtCore 0x00000001208e10cb QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 731
26 com.apple.CoreFoundation 0x00007fff39f08395 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
27 com.apple.CoreFoundation 0x00007fff39f0833b __CFRunLoopDoSource0 + 108
28 com.apple.CoreFoundation 0x00007fff39eebdd1 __CFRunLoopDoSources0 + 195
29 com.apple.CoreFoundation 0x00007fff39eeb37a __CFRunLoopRun + 1219
30 com.apple.CoreFoundation 0x00007fff39eeac64 CFRunLoopRunSpecific + 463
31 com.apple.HIToolbox 0x00007fff39181ab5 RunCurrentEventLoopInMode + 293
32 com.apple.HIToolbox 0x00007fff391817eb ReceiveNextEventCommon + 618
33 com.apple.HIToolbox 0x00007fff39181568 _BlockUntilNextEventMatchingListInModeWithFilter + 64
34 com.apple.AppKit 0x00007fff3743c363 _DPSNextEvent + 997
35 com.apple.AppKit 0x00007fff3743b102 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1362
36 com.apple.AppKit 0x00007fff37435165 -[NSApplication run] + 699
37 QtGui 0x0000000120bae174 QDesktopWidget::resizeEvent(QResizeEvent*) + 12724
38 QtCore 0x00000001208dfa34 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68
39 QtCore 0x00000001208dfd54 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180
40 QtCore 0x00000001208e137c QCoreApplication::exec() + 188
41 com.yourcompany.Freeview 0x000000010ff03f58 main + 6232
42 com.yourcompany.Freeview 0x000000010fe24974 start + 52
Thread 1:
0 libsystem_pthread.dylib 0x00007fff6732f3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 2:
0 libsystem_pthread.dylib 0x00007fff6732f3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 3:
0 libsystem_pthread.dylib 0x00007fff6732f3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 4:
0 libsystem_pthread.dylib 0x00007fff6732f3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 5:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6727617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672766d0 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff39eebfde __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff39eeb52d __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff39eeac64 CFRunLoopRunSpecific + 463
5 com.apple.AppKit 0x00007fff37444f89 _NSEventThread + 160
6 libsystem_pthread.dylib 0x00007fff67330305 _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff6733326f _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff6732f415 thread_start + 13
Thread 6:
0 libsystem_pthread.dylib 0x00007fff6732f3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 7:
0 libsystem_pthread.dylib 0x00007fff6732f3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 8:: CVDisplayLink
0 libsystem_kernel.dylib 0x00007fff672797de __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff67333593 _pthread_cond_wait + 724
2 com.apple.CoreVideo 0x00007fff3bd2be90 CVDisplayLink::runIOThread() + 722
3 libsystem_pthread.dylib 0x00007fff67330305 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6733326f _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff6732f415 thread_start + 13
Thread 9 Crashed:
0 dyld 0x0000000128c4e456 __abort_with_payload + 10
1 dyld 0x0000000128c4dc4d abort_with_payload_wrapper_internal + 82
2 dyld 0x0000000128c4dc7f abort_with_payload + 9
3 dyld 0x0000000128c0baea dyld::halt(char const*) + 343
4 dyld 0x0000000128c0bc17 dyld::fastBindLazySymbol(ImageLoader**, unsigned long) + 170
5 libdyld.dylib 0x00007fff67128c1a dyld_stub_binder + 282
6 ??? 0x00000001204dd018 0 + 4836937752
7 com.yourcompany.Freeview 0x000000010fead0df LayerMRI::LoadVolumeFromFile() + 399
8 com.yourcompany.Freeview 0x000000010ff79ea1 ThreadIOWorker::run() + 1361
9 QtCore 0x00000001208275b5 QThread::setPriority(QThread::Priority) + 469
10 libsystem_pthread.dylib 0x00007fff67330305 _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff6733326f _pthread_start + 70
12 libsystem_pthread.dylib 0x00007fff6732f415 thread_start + 13
Thread 9 crashed with X86 Thread State (64-bit):
rax: 0x0000000002000209 rbx: 0x0000000000000000 rcx: 0x000070000787ea48 rdx: 0x000070000787eeb0
rdi: 0x0000000000000006 rsi: 0x0000000000000004 rbp: 0x000070000787ea90 rsp: 0x000070000787ea48
r8: 0x000070000787eab0 r9: 0x0000000000000000 r10: 0x0000000000000098 r11: 0x0000000000000246
r12: 0x0000000000000098 r13: 0x000070000787eeb0 r14: 0x0000000000000004 r15: 0x0000000000000006
rip: 0x0000000128c4e456 rfl: 0x0000000000000246 cr2: 0x000000012519c000
Logical CPU: 0
Error Code: 0x02000209
Trap Number: 133
-----
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