We are trying to run many subjects through recon-all in batches on an 8 core Windows Server on which we have virtualBox running CentOS7 and freesurfer 6.

 

Can you tell me if this command will utilize all 8 cores effectively to process all 8 subjects simultaneously?

 

recon-all -subjid TBI1_002 -i TBI1_002_v1.nii.gz \

-subjid TBI1_003 –i  TBI1_003_v1.nii.gz \

-subjid TBI1_005 -i TBI1_005_v1.nii.gz \

-subjid TBI1_006 -i TBI1_006_v1.nii.gz \

-subjid TBI1_007 -i TBI1_007_v1.nii.gz \

-subjid TBI1_009 -i TBI1_009_v1.nii.gz \

-subjid TBI1_012 -i TBI1_012_v1.nii.gz \

-subjid TBI1_013 -i TBI1_013_v1.nii.gz \

-all -parallel -openmp 8

 

Thanks,

 

John

 

John R. Absher, MD, FAAN

GHS Neurosciences

jabsher@ghs.org

864-350-6655 (mobile)