You may be interested in https://www.oxcns.org/aal3.html​ AAL3, which has the estimations of the thalamus nucleis from fs6


Victor Zeng
Beth Israel Deaconess Medical Center
Keshavan Lab
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From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of 邹广源 <zouguangyuan@pku.edu.cn>
Sent: Wednesday, July 8, 2020 8:45 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [External] [Freesurfer] The thalamic atlas in MNI space
 

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Dear experts



I am performing a fMRI analysis about the thalamus. I would like to see the overlap of my thalamic ROI with the atlas derived in 'A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology' (Iglesias, NeuroImage, 2018). Is there a version of this atlas in the MNI space? I found the 'ThalamicNuclei' folder in FreeSurfer but it seems not an atlas in the MNI space. I am new in FreeSurfer. Could you please give me some suggestions?

 

Thanks for your time.

 

Best,

Guangyuan Zou



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