It says that it was "Killed" which sounds like the job exceeded some resource on the supercomputer. You should contact the administrators to see what the limits are and whether you exceeded them. You can also run the same subject on a regular computer and see if it dies in the same place.

Dear FreeSurfer developers,

I am a new FreeSurfer user and I am trying to run it in a supercomputer for the first time.

Recon-all finished with errors (see log attached) during skull stripping.

I have searched the archives and only found that it could be a memory problem, but I am unsure about this.

The version of freesurfer is: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2

Thank you for your help,
Diana

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Diana Tordesillas Gutiérrez, PhD
Neuroimaging Unit IDIVAL
IDIVAL Building
Avda. Cardenal Herrera Oria s/n
39011 Santander
Spain
Tel. +34 942202677
diana.tordesillas@humv.es
diana.tordesillas@gmail.com

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