Dear Fidel,

This is really weird… that’s essentially the last step. I you eg didn’t have writing permissions, you’d get an error.

Would it be possible to share the data, so I can try to reproduce the issue on my end?

Cheers,

/Eugenio

--

Juan Eugenio Iglesias

http://www.jeiglesias.com

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of fidel vila <fidelvila@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, March 15, 2023 at 2:29 PM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] EasyReg usage

        External Email - Use Caution        

Hi,

I checked the archive for any pointers about specific use instructions for EasyReg and read the wiki page. 
I would like to register three T1w acquisitions on three planes (Axial, Cor, Sagittal). 
This was my first attempt:
mri_easyreg --ref [myimageAXIAL.nii]  --flo [myimageCOR] --ref_seg [filename_tobecreate_seg_not_runpreviously]  --flo_seg /[filename_tobecreate_seg_not_runpreviously] --ref_reg /[filename_tobecreate]

The command run and did generate the segmentation files but froze here:

Deforming and writing to disk

Computing backward field

Deforming reference image

Saving deformed reference image

I could not find a log file. 
Any suggestions? My plan was to use EasyReg on this registered image and register it to the Saggital acquisition, but maybe there is a way to do that registration at once?
thanks for any pointers and for putting together such amazing tools,

Fidel