Il giorno gio 3 mag 2018 alle ore 00:49 Douglas N. Greve <dgreve@mgh.harvard.edu> ha scritto:

oops, sorry. Looks like it is having a problem loading your paradigm
file. Check that. If the error does not pop out to you then send it to me.

On 05/02/2018 10:06 AM, Francesca Strappini wrote:
> Hi, sorry, maybe my last email got lost. Is there anything I can try
> to fix this problem with selxavg3-sess?
>
> Thanks!
> Best
> Francesca
>
> 2018-04-24 20:35 GMT+03:00 Francesca Strappini
> <francescastrappini@gmail.com <mailto:francescastrappini@gmail.com>>:
>
> Thank you for the reply!
> I deleted the contrasts and run this command line:
>
> selxavg3-sess -a FF-MonkeyCassis.sm03.rh -s MonkeyCassis-FF -no-con-ok
>
>
> ------- matlab output --------------------
> MATLAB is selecting SOFTWARE OPENGL rendering.
>
>                              < M A T L A B (R) >
>                    Copyright 1984-2016 The MathWorks, Inc.
>                     R2016b (9.1.0.441655) 64-bit (glnxa64)
>                               September 7, 2016
>
>
> To get started, type one of these: helpwin, helpdesk, or demo.
> For product information, visit www.mathworks.com
> <http://www.mathworks.com>.
>
> >> >> >> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
> >> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m
> >> /usr/local/freesurfer/matlab/MRIread.m
> >> >> >> starting fast_selxavg3b
>
>
> #@# MonkeyCassis-FF ###############################
> /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF
> -------------------------
> $Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $
> -------------------------
> outtop = /usr/local/freesurfer/fsfast/Monkeys
> Extension format = nii.gz
> INFO: key nSliceGroups unrecognized, line 11, skipping
> Subscripted assignment dimension mismatch.
>
> Error in fast_ldpar4 (line 97)
>    par4(nthrow,1) = tonset;
>
> Error in flac_customize (line 121)
>      [par partype] = fast_ldpar4(parpath);
>
> Error in fast_selxavg3b (line 129)
> flac0 = flac_customize(flac0);
>
> >> ------------------------------------------
> ERROR: fast_selxavg3() failed\n
>
>
> 2018-04-24 20:27 GMT+03:00 Douglas Greve <dgreve@mgh.harvard.edu
> <mailto:dgreve@mgh.harvard.edu>>:
>
> Try deleting the contrasts (.mat files) and rerunning
>
>
> On 4/24/18 5:48 AM, Francesca Strappini wrote:
>>
>>
>> Dear FreeSurfer experts,
>>
>> I'm trying to analyze some monkey functional data. I got this
>> error message with selxavg3-sess.
>>
>> I run the following commands:
>>
>> mkcontrast-sess -analysis FF-MonkeyCassis.sm03.lh -contrast
>> ON-vs-OFF -a 1 -c 0
>> mkcontrast-sess -analysis FF-MonkeyCassis.sm03.rh -contrast
>> ON-vs-OFF -a 1 -c 0
>> preproc-sess -surface MonkeyCassis lhrh -fwhm 3 -s
>> MonkeyCassis-FF -fsd bold -per-session
>> selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF
>>
>>
>> ------- matlab output --------------------
>> MATLAB is selecting SOFTWARE OPENGL rendering.
>>
>>                              < M A T L A B (R) >
>>                    Copyright 1984-2016 The MathWorks, Inc.
>>                     R2016b (9.1.0.441655) 64-bit (glnxa64)
>> September 7, 2016
>>
>>
>> To get started, type one of these: helpwin, helpdesk, or demo.
>> For product information, visit www.mathworks.com
>> <http://www.mathworks.com>.
>>
>> >> >> >> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> >> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m
>> >> /usr/local/freesurfer/matlab/MRIread.m
>> >> >> >> starting fast_selxavg3b
>>
>>
>> #@# MonkeyCassis-FF ###############################
>> /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF
>> -------------------------
>> $Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $
>> -------------------------
>> outtop = /usr/local/freesurfer/fsfast/Monkeys
>> Extension format = nii.gz
>> INFO: key nSliceGroups unrecognized, line 11, skipping
>>   1 ON-vs-OFF.mat
>> Subscripted assignment dimension mismatch.
>>
>> Error in fast_ldpar4 (line 97)
>>    par4(nthrow,1) = tonset;
>>
>> Error in flac_customize (line 121)
>>      [par partype] = fast_ldpar4(parpath);
>>
>> Error in fast_selxavg3b (line 129)
>> flac0 = flac_customize(flac0);
>>
>> >> ------------------------------------------
>> ERROR: fast_selxavg3() failed\n
>>
>> Thank you!
>> Best
>>
>> Francesca
>>
>> --
>> Francesca Strappini, Ph.D.
>> Neurobiology Department
>> Weizmann Institute of Science
>> 234 Herzl Street, Rehovot 7610001 Israel
>> Tel.: +972 58 444 2584
>> E-mail: francesca.strappini@weizmann.ac.il
>> <mailto:francesca.strappini@weizmann.ac.il>
>>
>>
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> --
> Francesca Strappini, Ph.D.
> Neurobiology Department
> Weizmann Institute of Science
> 234 Herzl Street, Rehovot 7610001 Israel
> Tel.: +972 58 444 2584
> E-mail: francesca.strappini@weizmann.ac.il
> <mailto:francesca.strappini@weizmann.ac.il>
>
>
>
>
> --
> Francesca Strappini, Ph.D.
> Neurobiology Department
> Weizmann Institute of Science
> 234 Herzl Street, Rehovot 7610001 Israel
> Tel.: +972 58 444 2584
> E-mail: francesca.strappini@weizmann.ac.il
> <mailto:francesca.strappini@weizmann.ac.il>
>
>
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