The value of what is too  high?


On 4/11/19 4:07 PM, Nasiriavanaki, Zahra wrote:
>
> Hi
>
>
> I have not got the answer to my question yet, and I appreciate if you
> could please let me know what you think about it.
>
>
> Thanks
>
> Mona
>
> ------------------------------------------------------------------------
> *From:* Nasiriavanaki, Zahra
> *Sent:* Tuesday, April 9, 2019 5:55:58 PM
> *To:* Freesurfer support list
> *Subject:* mri_segstats
>
> Dear Freesurferers
>
>
> I was trying to do a connectivity analysis using subnuclei of Amygdala.
>
> I had an Amygdala segmentation file (reg.lh.HBT.mgz for letf
> Amygdala) and I tried to use that in mri_segstats to extract the
> timeseries and then use it as a seed in my analysis. However when I
> looked at the results, the values are too high (around 800). Could you
> please let me know what I'm doing wrong?
>
> P.S: the segmentation was basically done in MNI152-1mm and I moved it
> to MNI305-2mm by mri_vol2vol.
>
> mri_vol2vol --mov MNI152template/MNI152_1/mri/reg.lh.HBT.mgz --targ
> $SUBJECTS_DIR/fsaverage/mri.2mm/mni305.cor.mgz --o
> $SUBJECTS_DIR/$subj/mri/reg.lh.HBT.mgz --interp nearest --regheade
>
> mri_segstats --i
> $all_subjects/$subj/rest/009/fmcpr.sdf.sm5.mni305.2mm.nii.gz --seg
> $SUBJECTS_DIR/$subj/mri/reg.lh.HBT.mgz --id 7001 --avgwf lateral.txt
>
>
> Thanks  a lot
>
> MOna
>
>
>
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