On Tue, Nov 9, 2010 at 9:30 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

Does
/Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self.nii
exist?

Jason Webster wrote:
>
>
> I'm trying to run a retinotopic analysis with the following commands:
>
> mkanalysis-sess -analysis retino-lh -TR 2 -retinotopy 40 -paradigm
> rtopy.para -funcstem fmcpr.sm5.self -surface self lh -mcextreg
> -runlistfile retRuns -fwhm 0
>
> selxavg3-sess -analysis retino-lh -s somesubject -df sessdir
>
> and am getting the error:
>
> >> >> >> >> >> >> >>
> /Applications/freesurfer/fsfast/toolbox/fast_selxavg3.m
>
> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
> $Id: fast_selxavg3.m,v 1.88.2.2 2010/07/16 15:31:24 greve Exp $
>
> outtop =
> /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data
>
> Extension format = nii
>
> ERROR: cannot determine format of
> /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self
>
> ERROR: attempting to read
> /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self
>
> ------------------------------------------
>
> ERROR: fast_selxavg3() failed\n
>
>
> It looks like this might have something to do with analysis.info

> <http://analysis.info>

>
> ...
> funcstem fmcpr.sm5.self
> ...
> RawSpace surface self lh
> ...
>
> Should the funcstem have gotten '.lh' or should this be worked out by
> getana or selxavg3-sess?
>
>
> Thanks,
>
>
> ~Jason
>
>
>
>
>
>
>

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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

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