Dorsa



Tue Jul 26 15:05:08 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg
/usr/local/freesurfer/bin/recon-all
-i JM7965_3TSRT_0001.dcm -subject jmcoreg -all
subjid jmcoreg
setenv SUBJECTS_DIR /usr/local/freesurfer/subjects
FREESURFER_HOME /usr/local/freesurfer
Actual FREESURFER_HOME /usr/local/freesurfer
build-stamp.txt: freesurfer-Linux-centos4-stable-pub-v5.3.0
Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux
cputime      unlimited
filesize     unlimited
datasize     unlimited
stacksize    8192 kbytes
coredumpsize 0 kbytes
memoryuse    unlimited
vmemoryuse   unlimited
descriptors  1024
memorylocked 64 kbytes
maxproc      5875
maxlocks     unlimited
maxsignal    5875
maxmessage   819200
maxnice      0
maxrtprio    0
maxrttime    unlimited

             total       used       free     shared    buffers     cached
Mem:        766528     682644      83884          0       9468     359488
-/+ buffers/cache:     313688     452840
Swap:      1944572      30856    1913716

########################################
program versions used
$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $
$Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $
mri_convert -all-info
ProgramName: mri_convert  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:08-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
FLIRT version 5.5
$Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $
mri_convert --version
stable5
ProgramName: tkregister2_cmdl  ProgramArguments: --all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:08-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@fishie (i686-pc-linux-gnu) on 2010-02-20 at 20:19:13
ProgramName: mri_make_uchar  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_normalize  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_watershed  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_gcut  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_segment  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_label2label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_em_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_ca_normalize  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_ca_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_ca_label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_pretess  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_fill  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_tessellate  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_concatenate_lta  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_normalize_tp2  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_smooth  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_inflate  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_curvature  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_sphere  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_fix_topology  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_topo_fixer  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_ca_label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:09-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_euler_number  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_make_surfaces  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_volmask  ProgramArguments: --all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_anatomical_stats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mrisp_paint  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_curvature_stats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mris_calc  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
$Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $

ProgramName: mri_robust_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
$Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $

ProgramName: mri_robust_template  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_and  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_or  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_fuse_segmentations  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
ProgramName: mri_segstats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/26-19:05:10-GMT  BuildTimeStamp: May 13 2013 18:53:32  CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $  User: fsuser  Machine: xubuntu-VirtualBox  Platform: Linux  PlatformVersion: 3.2.0-23-generic  CompilerName: GCC  CompilerVersion: 30400
#######################################
GCADIR /usr/local/freesurfer/average
GCA RB_all_2008-03-26.gca
GCASkull RB_all_withskull_2008-03-26.gca
AvgCurvTif average.curvature.filled.buckner40.tif
GCSDIR /usr/local/freesurfer/average
GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
#######################################
/usr/local/freesurfer/subjects/jmcoreg

 mri_convert /home/fsuser/JM7965_3TSRT_0001.dcm /usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz

mri_convert /home/fsuser/JM7965_3TSRT_0001.dcm /usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/fsuser/JM7965_3TSRT_0001.dcm...
Starting DICOMRead2()
dcmfile = /home/fsuser/JM7965_3TSRT_0001.dcm
dcmdir = /home/fsuser
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0001.dcm
Ref Series No = 502
Found 750 files, checking for dicoms
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0001.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0002.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0003.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0004.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0005.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0006.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0007.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0008.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0009.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0010.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0011.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0012.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0013.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0014.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0015.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0016.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0017.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0018.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0019.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0020.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0021.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0022.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0023.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0024.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0025.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0026.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0027.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0028.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0029.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0030.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0031.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0032.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0033.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0034.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0035.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0036.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0037.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0038.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0039.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0040.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0041.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0042.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0043.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0044.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0045.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0046.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0047.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0048.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0049.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0050.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0051.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0052.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0053.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0054.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0055.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0056.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0057.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0058.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0059.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0060.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0061.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0410.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0412.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0414.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0415.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0416.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0421.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0422.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0423.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0424.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0430.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0445.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0001.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0004.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0017.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0021.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0022.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0054.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0105.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0106.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0111.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0112.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0113.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0114.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0116.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0117.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0119.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0120.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0121.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0122.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0126.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0128.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0129.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0130.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0131.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0133.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0134.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0135.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0136.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0137.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0138.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0139.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0140.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0141.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0142.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0143.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0144.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0145.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0146.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0148.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0151.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0152.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0153.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0154.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0155.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0156.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0157.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0158.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0159.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0160.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0161.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0163.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0164.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0165.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0166.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0167.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0168.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0169.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0170.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0171.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0172.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0173.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0174.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0175.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0176.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0178.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0179.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0180.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0181.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0182.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0183.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0184.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0185.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0186.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0187.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0188.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0189.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0190.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0192.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0193.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0194.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0195.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0196.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0197.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0198.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0199.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0200.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0201.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0202.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0203.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0204.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0205.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0207.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0208.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0209.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0210.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0211.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0212.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0213.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0214.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0215.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0216.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0217.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0218.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0219.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0220.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0222.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0223.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0224.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0225.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0226.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0227.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0228.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0229.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0230.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0231.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0232.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0233.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0234.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0235.dcm
Found 235 dicom files in series.
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0001.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0002.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0003.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0004.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0005.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0006.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0007.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0008.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0009.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0010.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0011.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0012.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0013.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0014.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0015.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0016.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0017.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0018.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0019.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0020.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0021.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0022.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0023.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0024.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0025.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0026.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0027.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0028.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0029.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0030.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0031.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0032.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0033.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0034.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0035.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0036.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0037.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0038.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0039.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0040.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0041.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0042.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0043.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0044.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0045.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0046.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0047.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0048.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0049.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0050.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0051.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0052.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0053.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0054.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0055.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0056.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0057.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0058.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0059.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0060.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0061.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0062.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0063.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0064.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0065.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0066.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0067.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0068.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0069.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0070.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0071.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0072.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0073.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0074.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0075.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0076.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0077.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0078.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0079.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0080.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0081.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0082.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0083.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0084.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0085.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0086.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0087.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0088.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0089.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0090.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0091.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0092.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0093.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0094.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0095.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0096.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0097.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0098.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0099.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0100.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0101.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0102.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0103.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0104.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0105.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0106.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0107.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0108.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0109.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0110.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0111.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0112.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0113.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0114.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0115.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0116.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0117.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0118.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0119.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0120.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0121.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0122.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0123.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0124.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0125.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0126.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0127.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0128.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0129.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0130.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0131.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0132.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0133.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0134.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0135.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0136.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0137.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0138.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0139.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0140.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0141.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0142.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0143.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0144.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0145.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0146.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0147.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0148.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0149.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0150.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0151.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0152.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0153.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0154.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0155.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0156.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0157.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0158.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0159.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0160.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0161.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0162.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0163.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0164.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0165.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0166.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0167.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0168.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0169.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0170.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0171.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0172.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0173.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0174.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0175.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0176.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0177.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0178.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0179.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0180.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0181.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0182.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0183.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0184.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0185.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0186.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0187.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0188.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0189.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0190.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0191.dcm
WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0192.dcm
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WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0005.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0006.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0007.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0008.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0009.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0010.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0011.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0012.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0013.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0014.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0016.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0017.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0018.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0019.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0020.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0021.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0022.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0023.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0024.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0025.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0026.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0027.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0028.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0029.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0031.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0032.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0033.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0034.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0035.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0036.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0037.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0038.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0039.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0040.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0041.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0042.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0043.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0045.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0046.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0047.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0048.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0049.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0050.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0051.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0052.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0053.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0054.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0055.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0056.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0057.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0058.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0060.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0061.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0062.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0063.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0064.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0065.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0066.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0067.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0068.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0069.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0070.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0071.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0072.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0074.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0075.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0076.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0077.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0078.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0079.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0080.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0081.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0082.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0083.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0084.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0085.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0086.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0087.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0089.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0090.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0091.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0092.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0093.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0094.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0095.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0096.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0097.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0098.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0099.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0100.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0101.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0102.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0104.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0105.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0106.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0107.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0108.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0109.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0110.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0111.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0112.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0113.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0114.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0115.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0116.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0117.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0119.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0120.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0121.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0122.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0123.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0124.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0125.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0126.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0127.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0128.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0129.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0130.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0131.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0133.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0134.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0135.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0136.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0137.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0138.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0139.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0140.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0141.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0142.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0143.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0144.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0145.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0146.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0148.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0149.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0150.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0151.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0152.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0153.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0154.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0155.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0156.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0157.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0158.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0159.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0160.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0161.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0163.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0164.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0165.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0166.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0167.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0168.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0169.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0170.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0171.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0172.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0173.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0174.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0175.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0176.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0178.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0179.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0180.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0181.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0182.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0183.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0184.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0185.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0186.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0187.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0188.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0189.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0190.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0192.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0193.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0194.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0195.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0196.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0197.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0198.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0199.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0200.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0201.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0202.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0203.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0204.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0205.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0207.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0208.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0209.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0210.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0211.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0212.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0213.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0214.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0215.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0216.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0217.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0218.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0219.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0220.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0222.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0223.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0224.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0225.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0226.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0227.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0228.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0229.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0230.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0231.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0232.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0233.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0234.dcm
WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0235.dcm
First Sorting
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0002.dcm
File2: /home/fsuser/JM7965_3TSRT_0003.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0001.dcm
File2: /home/fsuser/JM7965_3TSRT_0002.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0004.dcm
File2: /home/fsuser/JM7965_3TSRT_0005.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0006.dcm
File2: /home/fsuser/JM7965_3TSRT_0007.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0004.dcm
File2: /home/fsuser/JM7965_3TSRT_0006.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0005.dcm
File2: /home/fsuser/JM7965_3TSRT_0006.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0001.dcm
File2: /home/fsuser/JM7965_3TSRT_0004.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0002.dcm
File2: /home/fsuser/JM7965_3TSRT_0004.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0003.dcm
File2: /home/fsuser/JM7965_3TSRT_0004.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0009.dcm
File2: /home/fsuser/JM7965_3TSRT_0010.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0008.dcm
File2: /home/fsuser/JM7965_3TSRT_0009.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0011.dcm
File2: /home/fsuser/JM7965_3TSRT_0012.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0013.dcm
File2: /home/fsuser/JM7965_3TSRT_0014.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0011.dcm
File2: /home/fsuser/JM7965_3TSRT_0013.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0012.dcm
File2: /home/fsuser/JM7965_3TSRT_0013.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0008.dcm
File2: /home/fsuser/JM7965_3TSRT_0011.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0009.dcm
File2: /home/fsuser/JM7965_3TSRT_0011.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0010.dcm
File2: /home/fsuser/JM7965_3TSRT_0011.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0001.dcm
File2: /home/fsuser/JM7965_3TSRT_0008.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0002.dcm
File2: /home/fsuser/JM7965_3TSRT_0008.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0003.dcm
File2: /home/fsuser/JM7965_3TSRT_0008.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0004.dcm
File2: /home/fsuser/JM7965_3TSRT_0008.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0005.dcm
File2: /home/fsuser/JM7965_3TSRT_0008.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0006.dcm
File2: /home/fsuser/JM7965_3TSRT_0008.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0007.dcm
File2: /home/fsuser/JM7965_3TSRT_0008.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0016.dcm
File2: /home/fsuser/JM7965_3TSRT_0017.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0015.dcm
File2: /home/fsuser/JM7965_3TSRT_0016.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0018.dcm
File2: /home/fsuser/JM7965_3TSRT_0019.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0020.dcm
File2: /home/fsuser/JM7965_3TSRT_0021.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0018.dcm
File2: /home/fsuser/JM7965_3TSRT_0020.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0019.dcm
File2: /home/fsuser/JM7965_3TSRT_0020.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0015.dcm
File2: /home/fsuser/JM7965_3TSRT_0018.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0016.dcm
File2: /home/fsuser/JM7965_3TSRT_0018.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0017.dcm
File2: /home/fsuser/JM7965_3TSRT_0018.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0022.dcm
File2: /home/fsuser/JM7965_3TSRT_0023.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0024.dcm
File2: /home/fsuser/JM7965_3TSRT_0025.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0022.dcm
File2: /home/fsuser/JM7965_3TSRT_0024.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0023.dcm
File2: /home/fsuser/JM7965_3TSRT_0024.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0026.dcm
File2: /home/fsuser/JM7965_3TSRT_0027.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0028.dcm
File2: /home/fsuser/JM7965_3TSRT_0029.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0026.dcm
File2: /home/fsuser/JM7965_3TSRT_0028.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0027.dcm
File2: /home/fsuser/JM7965_3TSRT_0028.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0022.dcm
File2: /home/fsuser/JM7965_3TSRT_0026.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0023.dcm
File2: /home/fsuser/JM7965_3TSRT_0026.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0024.dcm
File2: /home/fsuser/JM7965_3TSRT_0026.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0025.dcm
File2: /home/fsuser/JM7965_3TSRT_0026.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0015.dcm
File2: /home/fsuser/JM7965_3TSRT_0022.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0016.dcm
File2: /home/fsuser/JM7965_3TSRT_0022.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0017.dcm
File2: /home/fsuser/JM7965_3TSRT_0022.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0018.dcm
File2: /home/fsuser/JM7965_3TSRT_0022.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0019.dcm
File2: /home/fsuser/JM7965_3TSRT_0022.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0020.dcm
File2: /home/fsuser/JM7965_3TSRT_0022.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0021.dcm
File2: /home/fsuser/JM7965_3TSRT_0022.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0001.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0002.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0003.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0004.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0005.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0006.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0007.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0008.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0009.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0010.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0011.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0012.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0013.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0014.dcm
File2: /home/fsuser/JM7965_3TSRT_0015.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0031.dcm
File2: /home/fsuser/JM7965_3TSRT_0032.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0030.dcm
File2: /home/fsuser/JM7965_3TSRT_0031.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0033.dcm
File2: /home/fsuser/JM7965_3TSRT_0034.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0035.dcm
File2: /home/fsuser/JM7965_3TSRT_0036.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0033.dcm
File2: /home/fsuser/JM7965_3TSRT_0035.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0034.dcm
File2: /home/fsuser/JM7965_3TSRT_0035.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0030.dcm
File2: /home/fsuser/JM7965_3TSRT_0033.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0031.dcm
File2: /home/fsuser/JM7965_3TSRT_0033.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0032.dcm
File2: /home/fsuser/JM7965_3TSRT_0033.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0038.dcm
File2: /home/fsuser/JM7965_3TSRT_0039.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0037.dcm
File2: /home/fsuser/JM7965_3TSRT_0038.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0040.dcm
File2: /home/fsuser/JM7965_3TSRT_0041.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0042.dcm
File2: /home/fsuser/JM7965_3TSRT_0043.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0040.dcm
File2: /home/fsuser/JM7965_3TSRT_0042.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0041.dcm
File2: /home/fsuser/JM7965_3TSRT_0042.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0037.dcm
File2: /home/fsuser/JM7965_3TSRT_0040.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0038.dcm
File2: /home/fsuser/JM7965_3TSRT_0040.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0039.dcm
File2: /home/fsuser/JM7965_3TSRT_0040.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0030.dcm
File2: /home/fsuser/JM7965_3TSRT_0037.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0031.dcm
File2: /home/fsuser/JM7965_3TSRT_0037.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0032.dcm
File2: /home/fsuser/JM7965_3TSRT_0037.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0033.dcm
File2: /home/fsuser/JM7965_3TSRT_0037.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0034.dcm
File2: /home/fsuser/JM7965_3TSRT_0037.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0035.dcm
File2: /home/fsuser/JM7965_3TSRT_0037.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0036.dcm
File2: /home/fsuser/JM7965_3TSRT_0037.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0045.dcm
File2: /home/fsuser/JM7965_3TSRT_0046.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0044.dcm
File2: /home/fsuser/JM7965_3TSRT_0045.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0047.dcm
File2: /home/fsuser/JM7965_3TSRT_0048.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0049.dcm
File2: /home/fsuser/JM7965_3TSRT_0050.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0047.dcm
File2: /home/fsuser/JM7965_3TSRT_0049.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0048.dcm
File2: /home/fsuser/JM7965_3TSRT_0049.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0044.dcm
File2: /home/fsuser/JM7965_3TSRT_0047.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0045.dcm
File2: /home/fsuser/JM7965_3TSRT_0047.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0046.dcm
File2: /home/fsuser/JM7965_3TSRT_0047.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0051.dcm
File2: /home/fsuser/JM7965_3TSRT_0052.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0053.dcm
File2: /home/fsuser/JM7965_3TSRT_0054.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0051.dcm
File2: /home/fsuser/JM7965_3TSRT_0053.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0052.dcm
File2: /home/fsuser/JM7965_3TSRT_0053.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0055.dcm
File2: /home/fsuser/JM7965_3TSRT_0056.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0057.dcm
File2: /home/fsuser/JM7965_3TSRT_0058.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0055.dcm
File2: /home/fsuser/JM7965_3TSRT_0057.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0056.dcm
File2: /home/fsuser/JM7965_3TSRT_0057.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0051.dcm
File2: /home/fsuser/JM7965_3TSRT_0055.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0052.dcm
File2: /home/fsuser/JM7965_3TSRT_0055.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0053.dcm
File2: /home/fsuser/JM7965_3TSRT_0055.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0054.dcm
File2: /home/fsuser/JM7965_3TSRT_0055.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0044.dcm
File2: /home/fsuser/JM7965_3TSRT_0051.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0045.dcm
File2: /home/fsuser/JM7965_3TSRT_0051.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0046.dcm
File2: /home/fsuser/JM7965_3TSRT_0051.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0047.dcm
File2: /home/fsuser/JM7965_3TSRT_0051.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0048.dcm
File2: /home/fsuser/JM7965_3TSRT_0051.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0049.dcm
File2: /home/fsuser/JM7965_3TSRT_0051.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0050.dcm
File2: /home/fsuser/JM7965_3TSRT_0051.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0030.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0031.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0032.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0033.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0034.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0035.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0036.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0037.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0038.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0039.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0040.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0041.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0042.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0043.dcm
File2: /home/fsuser/JM7965_3TSRT_0044.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0001.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0002.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0003.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0004.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0005.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0006.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0007.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0008.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0009.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0010.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0011.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0012.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0013.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0014.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0015.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0016.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0017.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0018.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0019.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0020.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0021.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0022.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0023.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0024.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0025.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0026.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0027.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0028.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0029.dcm
File2: /home/fsuser/JM7965_3TSRT_0030.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0060.dcm
File2: /home/fsuser/JM7965_3TSRT_0061.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0059.dcm
File2: /home/fsuser/JM7965_3TSRT_0060.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0062.dcm
File2: /home/fsuser/JM7965_3TSRT_0063.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0064.dcm
File2: /home/fsuser/JM7965_3TSRT_0065.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0062.dcm
File2: /home/fsuser/JM7965_3TSRT_0064.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0063.dcm
File2: /home/fsuser/JM7965_3TSRT_0064.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0059.dcm
File2: /home/fsuser/JM7965_3TSRT_0062.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0060.dcm
File2: /home/fsuser/JM7965_3TSRT_0062.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0061.dcm
File2: /home/fsuser/JM7965_3TSRT_0062.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0067.dcm
File2: /home/fsuser/JM7965_3TSRT_0068.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0066.dcm
File2: /home/fsuser/JM7965_3TSRT_0067.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0069.dcm
File2: /home/fsuser/JM7965_3TSRT_0070.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0071.dcm
File2: /home/fsuser/JM7965_3TSRT_0072.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0069.dcm
File2: /home/fsuser/JM7965_3TSRT_0071.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0070.dcm
File2: /home/fsuser/JM7965_3TSRT_0071.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0066.dcm
File2: /home/fsuser/JM7965_3TSRT_0069.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0067.dcm
File2: /home/fsuser/JM7965_3TSRT_0069.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0068.dcm
File2: /home/fsuser/JM7965_3TSRT_0069.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0059.dcm
File2: /home/fsuser/JM7965_3TSRT_0066.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0060.dcm
File2: /home/fsuser/JM7965_3TSRT_0066.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0061.dcm
File2: /home/fsuser/JM7965_3TSRT_0066.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0062.dcm
File2: /home/fsuser/JM7965_3TSRT_0066.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0063.dcm
File2: /home/fsuser/JM7965_3TSRT_0066.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0064.dcm
File2: /home/fsuser/JM7965_3TSRT_0066.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0065.dcm
File2: /home/fsuser/JM7965_3TSRT_0066.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0074.dcm
File2: /home/fsuser/JM7965_3TSRT_0075.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0073.dcm
File2: /home/fsuser/JM7965_3TSRT_0074.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0076.dcm
File2: /home/fsuser/JM7965_3TSRT_0077.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0078.dcm
File2: /home/fsuser/JM7965_3TSRT_0079.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0076.dcm
File2: /home/fsuser/JM7965_3TSRT_0078.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0077.dcm
File2: /home/fsuser/JM7965_3TSRT_0078.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0073.dcm
File2: /home/fsuser/JM7965_3TSRT_0076.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0074.dcm
File2: /home/fsuser/JM7965_3TSRT_0076.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0075.dcm
File2: /home/fsuser/JM7965_3TSRT_0076.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0080.dcm
File2: /home/fsuser/JM7965_3TSRT_0081.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0082.dcm
File2: /home/fsuser/JM7965_3TSRT_0083.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0080.dcm
File2: /home/fsuser/JM7965_3TSRT_0082.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0081.dcm
File2: /home/fsuser/JM7965_3TSRT_0082.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0084.dcm
File2: /home/fsuser/JM7965_3TSRT_0085.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0086.dcm
File2: /home/fsuser/JM7965_3TSRT_0087.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0084.dcm
File2: /home/fsuser/JM7965_3TSRT_0086.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0085.dcm
File2: /home/fsuser/JM7965_3TSRT_0086.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0080.dcm
File2: /home/fsuser/JM7965_3TSRT_0084.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0081.dcm
File2: /home/fsuser/JM7965_3TSRT_0084.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0082.dcm
File2: /home/fsuser/JM7965_3TSRT_0084.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0083.dcm
File2: /home/fsuser/JM7965_3TSRT_0084.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0073.dcm
File2: /home/fsuser/JM7965_3TSRT_0080.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0074.dcm
File2: /home/fsuser/JM7965_3TSRT_0080.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0075.dcm
File2: /home/fsuser/JM7965_3TSRT_0080.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0076.dcm
File2: /home/fsuser/JM7965_3TSRT_0080.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0077.dcm
File2: /home/fsuser/JM7965_3TSRT_0080.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0078.dcm
File2: /home/fsuser/JM7965_3TSRT_0080.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0079.dcm
File2: /home/fsuser/JM7965_3TSRT_0080.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0059.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0060.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0061.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0062.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0063.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0064.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0065.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0066.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0067.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0068.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0069.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0070.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0071.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0072.dcm
File2: /home/fsuser/JM7965_3TSRT_0073.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0089.dcm
File2: /home/fsuser/JM7965_3TSRT_0090.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0088.dcm
File2: /home/fsuser/JM7965_3TSRT_0089.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0091.dcm
File2: /home/fsuser/JM7965_3TSRT_0092.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0093.dcm
File2: /home/fsuser/JM7965_3TSRT_0094.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0091.dcm
File2: /home/fsuser/JM7965_3TSRT_0093.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0092.dcm
File2: /home/fsuser/JM7965_3TSRT_0093.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0088.dcm
File2: /home/fsuser/JM7965_3TSRT_0091.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0089.dcm
File2: /home/fsuser/JM7965_3TSRT_0091.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0090.dcm
File2: /home/fsuser/JM7965_3TSRT_0091.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0095.dcm
File2: /home/fsuser/JM7965_3TSRT_0096.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0097.dcm
File2: /home/fsuser/JM7965_3TSRT_0098.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0095.dcm
File2: /home/fsuser/JM7965_3TSRT_0097.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0096.dcm
File2: /home/fsuser/JM7965_3TSRT_0097.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0099.dcm
File2: /home/fsuser/JM7965_3TSRT_0100.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0101.dcm
File2: /home/fsuser/JM7965_3TSRT_0102.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0099.dcm
File2: /home/fsuser/JM7965_3TSRT_0101.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0100.dcm
File2: /home/fsuser/JM7965_3TSRT_0101.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0095.dcm
File2: /home/fsuser/JM7965_3TSRT_0099.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0096.dcm
File2: /home/fsuser/JM7965_3TSRT_0099.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0097.dcm
File2: /home/fsuser/JM7965_3TSRT_0099.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0098.dcm
File2: /home/fsuser/JM7965_3TSRT_0099.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0088.dcm
File2: /home/fsuser/JM7965_3TSRT_0095.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0089.dcm
File2: /home/fsuser/JM7965_3TSRT_0095.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0090.dcm
File2: /home/fsuser/JM7965_3TSRT_0095.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0091.dcm
File2: /home/fsuser/JM7965_3TSRT_0095.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0092.dcm
File2: /home/fsuser/JM7965_3TSRT_0095.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0093.dcm
File2: /home/fsuser/JM7965_3TSRT_0095.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0094.dcm
File2: /home/fsuser/JM7965_3TSRT_0095.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0104.dcm
File2: /home/fsuser/JM7965_3TSRT_0105.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0103.dcm
File2: /home/fsuser/JM7965_3TSRT_0104.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0106.dcm
File2: /home/fsuser/JM7965_3TSRT_0107.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0108.dcm
File2: /home/fsuser/JM7965_3TSRT_0109.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0106.dcm
File2: /home/fsuser/JM7965_3TSRT_0108.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0107.dcm
File2: /home/fsuser/JM7965_3TSRT_0108.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0103.dcm
File2: /home/fsuser/JM7965_3TSRT_0106.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0104.dcm
File2: /home/fsuser/JM7965_3TSRT_0106.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0105.dcm
File2: /home/fsuser/JM7965_3TSRT_0106.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0110.dcm
File2: /home/fsuser/JM7965_3TSRT_0111.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0112.dcm
File2: /home/fsuser/JM7965_3TSRT_0113.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0110.dcm
File2: /home/fsuser/JM7965_3TSRT_0112.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0111.dcm
File2: /home/fsuser/JM7965_3TSRT_0112.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0114.dcm
File2: /home/fsuser/JM7965_3TSRT_0115.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0116.dcm
File2: /home/fsuser/JM7965_3TSRT_0117.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0114.dcm
File2: /home/fsuser/JM7965_3TSRT_0116.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0115.dcm
File2: /home/fsuser/JM7965_3TSRT_0116.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0110.dcm
File2: /home/fsuser/JM7965_3TSRT_0114.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0111.dcm
File2: /home/fsuser/JM7965_3TSRT_0114.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0112.dcm
File2: /home/fsuser/JM7965_3TSRT_0114.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0113.dcm
File2: /home/fsuser/JM7965_3TSRT_0114.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0103.dcm
File2: /home/fsuser/JM7965_3TSRT_0110.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0104.dcm
File2: /home/fsuser/JM7965_3TSRT_0110.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0105.dcm
File2: /home/fsuser/JM7965_3TSRT_0110.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0106.dcm
File2: /home/fsuser/JM7965_3TSRT_0110.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0107.dcm
File2: /home/fsuser/JM7965_3TSRT_0110.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0108.dcm
File2: /home/fsuser/JM7965_3TSRT_0110.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0109.dcm
File2: /home/fsuser/JM7965_3TSRT_0110.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0088.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0089.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0090.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0091.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0092.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0093.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0094.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0095.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0096.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0097.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0098.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0099.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0100.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0101.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0102.dcm
File2: /home/fsuser/JM7965_3TSRT_0103.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0059.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0060.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0061.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0062.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0063.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0064.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0065.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0066.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0067.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0068.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0069.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0070.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0071.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0072.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0073.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0074.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0075.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0076.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0077.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0078.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0079.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0080.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0081.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0082.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0083.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0084.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0085.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0086.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0087.dcm
File2: /home/fsuser/JM7965_3TSRT_0088.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0001.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0002.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0003.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0004.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0005.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0006.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0007.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0008.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0009.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0010.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0011.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0012.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0013.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0014.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0015.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0016.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0017.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0018.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0019.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0020.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0021.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0022.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0023.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0024.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0025.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0026.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0027.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0028.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0029.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0030.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0031.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0032.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0033.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0034.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0035.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0036.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0037.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0038.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0039.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0040.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0041.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0042.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0043.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0044.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0045.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0046.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0047.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0048.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0049.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0050.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0051.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0052.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0053.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0054.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0055.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0056.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0057.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0058.dcm
File2: /home/fsuser/JM7965_3TSRT_0059.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0119.dcm
File2: /home/fsuser/JM7965_3TSRT_0120.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0118.dcm
File2: /home/fsuser/JM7965_3TSRT_0119.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0121.dcm
File2: /home/fsuser/JM7965_3TSRT_0122.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0123.dcm
File2: /home/fsuser/JM7965_3TSRT_0124.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0121.dcm
File2: /home/fsuser/JM7965_3TSRT_0123.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0122.dcm
File2: /home/fsuser/JM7965_3TSRT_0123.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0118.dcm
File2: /home/fsuser/JM7965_3TSRT_0121.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0119.dcm
File2: /home/fsuser/JM7965_3TSRT_0121.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0120.dcm
File2: /home/fsuser/JM7965_3TSRT_0121.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0126.dcm
File2: /home/fsuser/JM7965_3TSRT_0127.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0125.dcm
File2: /home/fsuser/JM7965_3TSRT_0126.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0128.dcm
File2: /home/fsuser/JM7965_3TSRT_0129.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0130.dcm
File2: /home/fsuser/JM7965_3TSRT_0131.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0128.dcm
File2: /home/fsuser/JM7965_3TSRT_0130.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0129.dcm
File2: /home/fsuser/JM7965_3TSRT_0130.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0125.dcm
File2: /home/fsuser/JM7965_3TSRT_0128.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0126.dcm
File2: /home/fsuser/JM7965_3TSRT_0128.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0127.dcm
File2: /home/fsuser/JM7965_3TSRT_0128.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0118.dcm
File2: /home/fsuser/JM7965_3TSRT_0125.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0119.dcm
File2: /home/fsuser/JM7965_3TSRT_0125.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0120.dcm
File2: /home/fsuser/JM7965_3TSRT_0125.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0121.dcm
File2: /home/fsuser/JM7965_3TSRT_0125.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0122.dcm
File2: /home/fsuser/JM7965_3TSRT_0125.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0123.dcm
File2: /home/fsuser/JM7965_3TSRT_0125.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0124.dcm
File2: /home/fsuser/JM7965_3TSRT_0125.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0133.dcm
File2: /home/fsuser/JM7965_3TSRT_0134.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0132.dcm
File2: /home/fsuser/JM7965_3TSRT_0133.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0135.dcm
File2: /home/fsuser/JM7965_3TSRT_0136.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0137.dcm
File2: /home/fsuser/JM7965_3TSRT_0138.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0135.dcm
File2: /home/fsuser/JM7965_3TSRT_0137.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0136.dcm
File2: /home/fsuser/JM7965_3TSRT_0137.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0132.dcm
File2: /home/fsuser/JM7965_3TSRT_0135.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0133.dcm
File2: /home/fsuser/JM7965_3TSRT_0135.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0134.dcm
File2: /home/fsuser/JM7965_3TSRT_0135.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0139.dcm
File2: /home/fsuser/JM7965_3TSRT_0140.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0141.dcm
File2: /home/fsuser/JM7965_3TSRT_0142.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0139.dcm
File2: /home/fsuser/JM7965_3TSRT_0141.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0140.dcm
File2: /home/fsuser/JM7965_3TSRT_0141.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0143.dcm
File2: /home/fsuser/JM7965_3TSRT_0144.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0145.dcm
File2: /home/fsuser/JM7965_3TSRT_0146.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0143.dcm
File2: /home/fsuser/JM7965_3TSRT_0145.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0144.dcm
File2: /home/fsuser/JM7965_3TSRT_0145.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0139.dcm
File2: /home/fsuser/JM7965_3TSRT_0143.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0140.dcm
File2: /home/fsuser/JM7965_3TSRT_0143.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0141.dcm
File2: /home/fsuser/JM7965_3TSRT_0143.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0142.dcm
File2: /home/fsuser/JM7965_3TSRT_0143.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0132.dcm
File2: /home/fsuser/JM7965_3TSRT_0139.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0133.dcm
File2: /home/fsuser/JM7965_3TSRT_0139.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0134.dcm
File2: /home/fsuser/JM7965_3TSRT_0139.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0135.dcm
File2: /home/fsuser/JM7965_3TSRT_0139.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0136.dcm
File2: /home/fsuser/JM7965_3TSRT_0139.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0137.dcm
File2: /home/fsuser/JM7965_3TSRT_0139.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0138.dcm
File2: /home/fsuser/JM7965_3TSRT_0139.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0118.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0119.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0120.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0121.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0122.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0123.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0124.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0125.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0126.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0127.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0128.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0129.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0130.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0131.dcm
File2: /home/fsuser/JM7965_3TSRT_0132.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0148.dcm
File2: /home/fsuser/JM7965_3TSRT_0149.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0147.dcm
File2: /home/fsuser/JM7965_3TSRT_0148.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0150.dcm
File2: /home/fsuser/JM7965_3TSRT_0151.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0152.dcm
File2: /home/fsuser/JM7965_3TSRT_0153.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0150.dcm
File2: /home/fsuser/JM7965_3TSRT_0152.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0151.dcm
File2: /home/fsuser/JM7965_3TSRT_0152.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0147.dcm
File2: /home/fsuser/JM7965_3TSRT_0150.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0148.dcm
File2: /home/fsuser/JM7965_3TSRT_0150.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0149.dcm
File2: /home/fsuser/JM7965_3TSRT_0150.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0154.dcm
File2: /home/fsuser/JM7965_3TSRT_0155.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0156.dcm
File2: /home/fsuser/JM7965_3TSRT_0157.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0154.dcm
File2: /home/fsuser/JM7965_3TSRT_0156.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0155.dcm
File2: /home/fsuser/JM7965_3TSRT_0156.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0158.dcm
File2: /home/fsuser/JM7965_3TSRT_0159.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0160.dcm
File2: /home/fsuser/JM7965_3TSRT_0161.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0158.dcm
File2: /home/fsuser/JM7965_3TSRT_0160.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0159.dcm
File2: /home/fsuser/JM7965_3TSRT_0160.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0154.dcm
File2: /home/fsuser/JM7965_3TSRT_0158.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0155.dcm
File2: /home/fsuser/JM7965_3TSRT_0158.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0156.dcm
File2: /home/fsuser/JM7965_3TSRT_0158.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0157.dcm
File2: /home/fsuser/JM7965_3TSRT_0158.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0147.dcm
File2: /home/fsuser/JM7965_3TSRT_0154.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0148.dcm
File2: /home/fsuser/JM7965_3TSRT_0154.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0149.dcm
File2: /home/fsuser/JM7965_3TSRT_0154.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0150.dcm
File2: /home/fsuser/JM7965_3TSRT_0154.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0151.dcm
File2: /home/fsuser/JM7965_3TSRT_0154.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0152.dcm
File2: /home/fsuser/JM7965_3TSRT_0154.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0153.dcm
File2: /home/fsuser/JM7965_3TSRT_0154.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0163.dcm
File2: /home/fsuser/JM7965_3TSRT_0164.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0162.dcm
File2: /home/fsuser/JM7965_3TSRT_0163.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0165.dcm
File2: /home/fsuser/JM7965_3TSRT_0166.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0167.dcm
File2: /home/fsuser/JM7965_3TSRT_0168.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0165.dcm
File2: /home/fsuser/JM7965_3TSRT_0167.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0166.dcm
File2: /home/fsuser/JM7965_3TSRT_0167.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0162.dcm
File2: /home/fsuser/JM7965_3TSRT_0165.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0163.dcm
File2: /home/fsuser/JM7965_3TSRT_0165.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0164.dcm
File2: /home/fsuser/JM7965_3TSRT_0165.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0169.dcm
File2: /home/fsuser/JM7965_3TSRT_0170.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0171.dcm
File2: /home/fsuser/JM7965_3TSRT_0172.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0169.dcm
File2: /home/fsuser/JM7965_3TSRT_0171.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0170.dcm
File2: /home/fsuser/JM7965_3TSRT_0171.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0173.dcm
File2: /home/fsuser/JM7965_3TSRT_0174.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0175.dcm
File2: /home/fsuser/JM7965_3TSRT_0176.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0173.dcm
File2: /home/fsuser/JM7965_3TSRT_0175.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0174.dcm
File2: /home/fsuser/JM7965_3TSRT_0175.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0169.dcm
File2: /home/fsuser/JM7965_3TSRT_0173.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0170.dcm
File2: /home/fsuser/JM7965_3TSRT_0173.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0171.dcm
File2: /home/fsuser/JM7965_3TSRT_0173.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0172.dcm
File2: /home/fsuser/JM7965_3TSRT_0173.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0162.dcm
File2: /home/fsuser/JM7965_3TSRT_0169.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0163.dcm
File2: /home/fsuser/JM7965_3TSRT_0169.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0164.dcm
File2: /home/fsuser/JM7965_3TSRT_0169.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0165.dcm
File2: /home/fsuser/JM7965_3TSRT_0169.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0166.dcm
File2: /home/fsuser/JM7965_3TSRT_0169.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0167.dcm
File2: /home/fsuser/JM7965_3TSRT_0169.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0168.dcm
File2: /home/fsuser/JM7965_3TSRT_0169.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0147.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0148.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0149.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0150.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0151.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0152.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0153.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0154.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0155.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0156.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0157.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0158.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0159.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0160.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0161.dcm
File2: /home/fsuser/JM7965_3TSRT_0162.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0118.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0119.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0120.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0121.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0122.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0123.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0124.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0125.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0126.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0127.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0128.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0129.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0130.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0131.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0132.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0133.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0134.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0135.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0136.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0137.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0138.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0139.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0140.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0141.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0142.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0143.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0144.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0145.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0146.dcm
File2: /home/fsuser/JM7965_3TSRT_0147.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0178.dcm
File2: /home/fsuser/JM7965_3TSRT_0179.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0177.dcm
File2: /home/fsuser/JM7965_3TSRT_0178.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0180.dcm
File2: /home/fsuser/JM7965_3TSRT_0181.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0182.dcm
File2: /home/fsuser/JM7965_3TSRT_0183.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0180.dcm
File2: /home/fsuser/JM7965_3TSRT_0182.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0181.dcm
File2: /home/fsuser/JM7965_3TSRT_0182.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0177.dcm
File2: /home/fsuser/JM7965_3TSRT_0180.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0178.dcm
File2: /home/fsuser/JM7965_3TSRT_0180.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0179.dcm
File2: /home/fsuser/JM7965_3TSRT_0180.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0185.dcm
File2: /home/fsuser/JM7965_3TSRT_0186.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0184.dcm
File2: /home/fsuser/JM7965_3TSRT_0185.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0187.dcm
File2: /home/fsuser/JM7965_3TSRT_0188.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0189.dcm
File2: /home/fsuser/JM7965_3TSRT_0190.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0187.dcm
File2: /home/fsuser/JM7965_3TSRT_0189.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0188.dcm
File2: /home/fsuser/JM7965_3TSRT_0189.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0184.dcm
File2: /home/fsuser/JM7965_3TSRT_0187.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0185.dcm
File2: /home/fsuser/JM7965_3TSRT_0187.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0186.dcm
File2: /home/fsuser/JM7965_3TSRT_0187.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0177.dcm
File2: /home/fsuser/JM7965_3TSRT_0184.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0178.dcm
File2: /home/fsuser/JM7965_3TSRT_0184.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0179.dcm
File2: /home/fsuser/JM7965_3TSRT_0184.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0180.dcm
File2: /home/fsuser/JM7965_3TSRT_0184.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0181.dcm
File2: /home/fsuser/JM7965_3TSRT_0184.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0182.dcm
File2: /home/fsuser/JM7965_3TSRT_0184.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0183.dcm
File2: /home/fsuser/JM7965_3TSRT_0184.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0192.dcm
File2: /home/fsuser/JM7965_3TSRT_0193.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0191.dcm
File2: /home/fsuser/JM7965_3TSRT_0192.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0194.dcm
File2: /home/fsuser/JM7965_3TSRT_0195.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0196.dcm
File2: /home/fsuser/JM7965_3TSRT_0197.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0194.dcm
File2: /home/fsuser/JM7965_3TSRT_0196.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0195.dcm
File2: /home/fsuser/JM7965_3TSRT_0196.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0191.dcm
File2: /home/fsuser/JM7965_3TSRT_0194.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0192.dcm
File2: /home/fsuser/JM7965_3TSRT_0194.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0193.dcm
File2: /home/fsuser/JM7965_3TSRT_0194.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0198.dcm
File2: /home/fsuser/JM7965_3TSRT_0199.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0200.dcm
File2: /home/fsuser/JM7965_3TSRT_0201.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0198.dcm
File2: /home/fsuser/JM7965_3TSRT_0200.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0199.dcm
File2: /home/fsuser/JM7965_3TSRT_0200.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0202.dcm
File2: /home/fsuser/JM7965_3TSRT_0203.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0204.dcm
File2: /home/fsuser/JM7965_3TSRT_0205.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0202.dcm
File2: /home/fsuser/JM7965_3TSRT_0204.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0203.dcm
File2: /home/fsuser/JM7965_3TSRT_0204.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0198.dcm
File2: /home/fsuser/JM7965_3TSRT_0202.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0199.dcm
File2: /home/fsuser/JM7965_3TSRT_0202.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0200.dcm
File2: /home/fsuser/JM7965_3TSRT_0202.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0201.dcm
File2: /home/fsuser/JM7965_3TSRT_0202.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0191.dcm
File2: /home/fsuser/JM7965_3TSRT_0198.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0192.dcm
File2: /home/fsuser/JM7965_3TSRT_0198.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0193.dcm
File2: /home/fsuser/JM7965_3TSRT_0198.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0194.dcm
File2: /home/fsuser/JM7965_3TSRT_0198.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0195.dcm
File2: /home/fsuser/JM7965_3TSRT_0198.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0196.dcm
File2: /home/fsuser/JM7965_3TSRT_0198.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0197.dcm
File2: /home/fsuser/JM7965_3TSRT_0198.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0177.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0178.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0179.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0180.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0181.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0182.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0183.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0184.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0185.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0186.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0187.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0188.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0189.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0190.dcm
File2: /home/fsuser/JM7965_3TSRT_0191.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0207.dcm
File2: /home/fsuser/JM7965_3TSRT_0208.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0206.dcm
File2: /home/fsuser/JM7965_3TSRT_0207.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0209.dcm
File2: /home/fsuser/JM7965_3TSRT_0210.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0211.dcm
File2: /home/fsuser/JM7965_3TSRT_0212.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0209.dcm
File2: /home/fsuser/JM7965_3TSRT_0211.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0210.dcm
File2: /home/fsuser/JM7965_3TSRT_0211.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0206.dcm
File2: /home/fsuser/JM7965_3TSRT_0209.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0207.dcm
File2: /home/fsuser/JM7965_3TSRT_0209.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0208.dcm
File2: /home/fsuser/JM7965_3TSRT_0209.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0213.dcm
File2: /home/fsuser/JM7965_3TSRT_0214.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0215.dcm
File2: /home/fsuser/JM7965_3TSRT_0216.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0213.dcm
File2: /home/fsuser/JM7965_3TSRT_0215.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0214.dcm
File2: /home/fsuser/JM7965_3TSRT_0215.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0217.dcm
File2: /home/fsuser/JM7965_3TSRT_0218.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0219.dcm
File2: /home/fsuser/JM7965_3TSRT_0220.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0217.dcm
File2: /home/fsuser/JM7965_3TSRT_0219.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0218.dcm
File2: /home/fsuser/JM7965_3TSRT_0219.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0213.dcm
File2: /home/fsuser/JM7965_3TSRT_0217.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0214.dcm
File2: /home/fsuser/JM7965_3TSRT_0217.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0215.dcm
File2: /home/fsuser/JM7965_3TSRT_0217.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0216.dcm
File2: /home/fsuser/JM7965_3TSRT_0217.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0206.dcm
File2: /home/fsuser/JM7965_3TSRT_0213.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0207.dcm
File2: /home/fsuser/JM7965_3TSRT_0213.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0208.dcm
File2: /home/fsuser/JM7965_3TSRT_0213.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0209.dcm
File2: /home/fsuser/JM7965_3TSRT_0213.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0210.dcm
File2: /home/fsuser/JM7965_3TSRT_0213.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0211.dcm
File2: /home/fsuser/JM7965_3TSRT_0213.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0212.dcm
File2: /home/fsuser/JM7965_3TSRT_0213.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0222.dcm
File2: /home/fsuser/JM7965_3TSRT_0223.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0221.dcm
File2: /home/fsuser/JM7965_3TSRT_0222.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0224.dcm
File2: /home/fsuser/JM7965_3TSRT_0225.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0226.dcm
File2: /home/fsuser/JM7965_3TSRT_0227.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0224.dcm
File2: /home/fsuser/JM7965_3TSRT_0226.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0225.dcm
File2: /home/fsuser/JM7965_3TSRT_0226.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0221.dcm
File2: /home/fsuser/JM7965_3TSRT_0224.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0222.dcm
File2: /home/fsuser/JM7965_3TSRT_0224.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0223.dcm
File2: /home/fsuser/JM7965_3TSRT_0224.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0228.dcm
File2: /home/fsuser/JM7965_3TSRT_0229.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0230.dcm
File2: /home/fsuser/JM7965_3TSRT_0231.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0228.dcm
File2: /home/fsuser/JM7965_3TSRT_0230.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0229.dcm
File2: /home/fsuser/JM7965_3TSRT_0230.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0232.dcm
File2: /home/fsuser/JM7965_3TSRT_0233.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0234.dcm
File2: /home/fsuser/JM7965_3TSRT_0235.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0232.dcm
File2: /home/fsuser/JM7965_3TSRT_0234.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0233.dcm
File2: /home/fsuser/JM7965_3TSRT_0234.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0228.dcm
File2: /home/fsuser/JM7965_3TSRT_0232.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0229.dcm
File2: /home/fsuser/JM7965_3TSRT_0232.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0230.dcm
File2: /home/fsuser/JM7965_3TSRT_0232.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0231.dcm
File2: /home/fsuser/JM7965_3TSRT_0232.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0221.dcm
File2: /home/fsuser/JM7965_3TSRT_0228.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0222.dcm
File2: /home/fsuser/JM7965_3TSRT_0228.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0223.dcm
File2: /home/fsuser/JM7965_3TSRT_0228.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0224.dcm
File2: /home/fsuser/JM7965_3TSRT_0228.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0225.dcm
File2: /home/fsuser/JM7965_3TSRT_0228.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0226.dcm
File2: /home/fsuser/JM7965_3TSRT_0228.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0227.dcm
File2: /home/fsuser/JM7965_3TSRT_0228.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0206.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0207.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0208.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0209.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0210.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0211.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0212.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0213.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0214.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0215.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0216.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0217.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0218.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0219.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0220.dcm
File2: /home/fsuser/JM7965_3TSRT_0221.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0177.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0178.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0179.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0180.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0181.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0182.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0183.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0184.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0185.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0186.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0187.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0188.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0189.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0190.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0191.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0192.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0193.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0194.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0195.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0196.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0197.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0198.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0199.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0200.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0201.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0202.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0203.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0204.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0205.dcm
File2: /home/fsuser/JM7965_3TSRT_0206.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0118.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0119.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0120.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0121.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0122.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0123.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0124.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0125.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0126.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0127.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0128.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0129.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0130.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0131.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0132.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0133.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0134.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0135.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0136.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0137.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0138.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0139.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0140.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0141.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0142.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0143.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0144.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0145.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0146.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0147.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0148.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0149.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0150.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0151.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0152.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0153.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0154.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0155.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0156.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0157.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0158.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0159.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0160.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0161.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0162.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0163.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0164.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0165.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0166.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0167.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0168.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0169.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0170.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0171.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0172.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0173.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0174.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0175.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0176.dcm
File2: /home/fsuser/JM7965_3TSRT_0177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0001.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0002.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0003.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0004.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0005.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0006.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0007.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0008.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0009.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0010.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0011.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0012.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0013.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0014.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0015.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0016.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0017.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0018.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0019.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0020.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0021.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0022.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0023.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0024.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0025.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0026.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0027.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0028.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0029.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0030.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0031.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0032.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0033.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0034.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0035.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0036.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0037.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0038.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0039.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0040.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0041.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0042.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0043.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0044.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0045.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0046.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0047.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0048.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0049.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0050.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0051.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0052.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0053.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0054.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0055.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0056.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0057.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0058.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0059.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0060.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0061.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0062.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0063.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0064.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0065.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0066.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0067.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0068.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0069.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0070.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0071.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0072.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0073.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0074.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0075.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0076.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0077.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0078.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0079.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0080.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0081.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0082.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0083.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0084.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0085.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0086.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0087.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0088.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0089.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0090.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0091.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0092.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0093.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0094.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0095.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0096.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0097.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0098.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0099.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0100.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0101.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0102.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0103.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0104.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0105.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0106.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0107.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0108.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0109.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0110.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0111.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0112.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0113.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0114.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0115.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0116.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/fsuser/JM7965_3TSRT_0117.dcm
File2: /home/fsuser/JM7965_3TSRT_0118.dcm
Computing Slice Direction
Vs: 0 0 0.625
Vs: 0 0 1
Second Sorting
Counting frames
nframes = 1
nslices = 235
ndcmfiles = 235
PE Dir = OTHER (dicom read)
TransferSyntaxUID: --1.2.840.10008.1.2--
Loading pixel data
TR=7.95, TE=3.67, TI=0.00, flip angle=8.00
i_ras = (-1, -0, 0)
j_ras = (-0, -1, 0)
k_ras = (-0, -0, 1)
writing to /usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz...
#--------------------------------------------
#@# MotionCor Tue Jul 26 15:05:24 EDT 2016
Found 1 runs
/usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz
Checking for (invalid) multi-frame inputs...
WARNING: only one run found. This is OK, but motion
correction cannot be performed on one run, so I'll
copy the run to rawavg and continue.

 cp /usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz

/usr/local/freesurfer/subjects/jmcoreg

 mri_convert /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz --conform

mri_convert /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz --conform
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz...
TR=7.95, TE=3.67, TI=0.00, flip angle=8.00
i_ras = (-1, -0, 0)
j_ras = (-0, -1, 0)
k_ras = (-0, -0, 1)
Original Data has (0.488281, 0.488281, 0.625) mm size and (512, 512, 235) voxels.
Data is conformed to 1 mm size and 256 voxels for all directions
changing data type from short to uchar (noscale = 0)...
MRIchangeType: Building histogram
Reslicing using trilinear interpolation
writing to /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz...

 mri_add_xform_to_header -c /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/talairach.xfm /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz

INFO: extension is mgz
#--------------------------------------------
#@# Talairach Tue Jul 26 15:05:54 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz


 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm


 cp transforms/talairach.auto.xfm transforms/talairach.xfm

#--------------------------------------------
#@# Talairach Failure Detection Tue Jul 26 15:07:19 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 talairach_afd -T 0.005 -xfm transforms/talairach.xfm

talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.8025, pval=0.8469 >= threshold=0.0050)

 awk -f /usr/local/freesurfer/bin/extract_talairach_avi_QA.awk /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/talairach_avi.log


 tal_QC_AZS /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/talairach_avi.log

TalAviQA: 0.95956
z-score: -4
#--------------------------------------------
#@# Nu Intensity Correction Tue Jul 26 15:07:19 EDT 2016

 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2

/usr/local/freesurfer/subjects/jmcoreg/mri
/usr/local/freesurfer/bin/mri_nu_correct.mni
--i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2
nIters 2
$Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $
Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux
Tue Jul 26 15:07:19 EDT 2016
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@fishie (i686-pc-linux-gnu) on 2010-02-20 at 20:19:13
tmpdir is ./tmp.mri_nu_correct.mni.3537
/usr/local/freesurfer/subjects/jmcoreg/mri
mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3537/nu0.mnc -odt float
mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3537/nu0.mnc -odt float
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from orig.mgz...
TR=7.95, TE=3.67, TI=0.00, flip angle=8.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
changing data type from uchar to float (noscale = 0)...
writing to ./tmp.mri_nu_correct.mni.3537/nu0.mnc...
 
--------------------------------------------------------
Iteration 1 Tue Jul 26 15:07:21 EDT 2016
nu_correct -clobber ./tmp.mri_nu_correct.mni.3537/nu0.mnc ./tmp.mri_nu_correct.mni.3537/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.3537/0/
[fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/jmcoreg/mri/] [2016-07-26 15:07:21] running:
  /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3537/0/ ./tmp.mri_nu_correct.mni.3537/nu0.mnc ./tmp.mri_nu_correct.mni.3537/nu1.imp

Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Number of iterations: 39
CV of field change: 0.000939138
[fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/jmcoreg/mri/] [2016-07-26 15:07:42] running:
  /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.3537/nu0.mnc ./tmp.mri_nu_correct.mni.3537/0//template.mnc

Transforming slices:......................................................................................Done
Transforming slices:................................................................................................................................................................................................................................................................Done
 
 
--------------------------------------------------------
Iteration 2 Tue Jul 26 15:07:46 EDT 2016
nu_correct -clobber ./tmp.mri_nu_correct.mni.3537/nu1.mnc ./tmp.mri_nu_correct.mni.3537/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.3537/1/
[fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/jmcoreg/mri/] [2016-07-26 15:07:46] running:
  /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3537/1/ ./tmp.mri_nu_correct.mni.3537/nu1.mnc ./tmp.mri_nu_correct.mni.3537/nu2.imp

Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153.
Processing:.................................................................Done
Number of iterations: 17
CV of field change: 0.000931733
[fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/jmcoreg/mri/] [2016-07-26 15:07:56] running:
  /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.3537/nu1.mnc ./tmp.mri_nu_correct.mni.3537/1//template.mnc

Transforming slices:......................................................................................Done
Transforming slices:................................................................................................................................................................................................................................................................Done
 
 
 
mri_binarize --i ./tmp.mri_nu_correct.mni.3537/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.3537/ones.mgz

$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
cwd /usr/local/freesurfer/subjects/jmcoreg/mri
cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.3537/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.3537/ones.mgz
sysname  Linux
hostname xubuntu-VirtualBox
machine  i686
user     fsuser

input      ./tmp.mri_nu_correct.mni.3537/nu2.mnc
frame      0
nErode3d   0
nErode2d   0
output     ./tmp.mri_nu_correct.mni.3537/ones.mgz
Binarizing based on threshold
min        -1
max        +infinity
binval        1
binvalnot     0
Found 16777216 values in range
Counting number of voxels
Found 16777216 voxels in final mask
mri_binarize done
mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3537/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.3537/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3537/input.mean.dat

$Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
cwd
cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3537/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.3537/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3537/input.mean.dat
sysname  Linux
hostname xubuntu-VirtualBox
machine  i686
user     fsuser
UseRobust  0
Loading ./tmp.mri_nu_correct.mni.3537/ones.mgz
Loading orig.mgz
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found   1 segmentations
Computing statistics for each segmentation
  0     1                                     16777216  16777216.000

Reporting on   1 segmentations
Computing spatial average of each frame
  0
Writing to ./tmp.mri_nu_correct.mni.3537/input.mean.dat
mri_segstats done
mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3537/ones.mgz --i ./tmp.mri_nu_correct.mni.3537/nu2.mnc --sum ./tmp.mri_nu_correct.mni.3537/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3537/output.mean.dat

$Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
cwd
cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3537/ones.mgz --i ./tmp.mri_nu_correct.mni.3537/nu2.mnc --sum ./tmp.mri_nu_correct.mni.3537/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3537/output.mean.dat
sysname  Linux
hostname xubuntu-VirtualBox
machine  i686
user     fsuser
UseRobust  0
Loading ./tmp.mri_nu_correct.mni.3537/ones.mgz
Loading ./tmp.mri_nu_correct.mni.3537/nu2.mnc
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found   1 segmentations
Computing statistics for each segmentation
  0     1                                     16777216  16777216.000

Reporting on   1 segmentations
Computing spatial average of each frame
  0
Writing to ./tmp.mri_nu_correct.mni.3537/output.mean.dat
mri_segstats done
mris_calc -o ./tmp.mri_nu_correct.mni.3537/nu2.mnc ./tmp.mri_nu_correct.mni.3537/nu2.mnc mul .99048498540591349087
Saving result to './tmp.mri_nu_correct.mni.3537/nu2.mnc' (type = MINC )                       [ ok ]
mri_convert ./tmp.mri_nu_correct.mni.3537/nu2.mnc nu.mgz --like orig.mgz
mri_convert ./tmp.mri_nu_correct.mni.3537/nu2.mnc nu.mgz --like orig.mgz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from ./tmp.mri_nu_correct.mni.3537/nu2.mnc...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: transform src into the like-volume: orig.mgz
writing to nu.mgz...
mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz
type change took 0 minutes and 7 seconds.
mapping (19, 97) to ( 3, 110)
 
 
Tue Jul 26 15:08:34 EDT 2016
mri_nu_correct.mni done

 mri_add_xform_to_header -c /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/talairach.xfm nu.mgz nu.mgz

INFO: extension is mgz
#--------------------------------------------
#@# Intensity Normalization Tue Jul 26 15:08:35 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_normalize -g 1 nu.mgz T1.mgz

using max gradient = 1.000
reading from nu.mgz...
normalizing image...
talairach transform
 1.148   0.006  -0.028   7.864;
 0.030   1.228   0.167  -11.499;
-0.007  -0.111   1.293  -26.558;
 0.000   0.000   0.000   1.000;
processing without aseg, no1d=0
MRInormInit():
INFO: Modifying talairach volume c_(r,a,s) based on average_305
MRInormalize():
MRIsplineNormalize(): npeaks = 13
Starting OpenSpline(): npoints = 13
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...

Iterating 2 times
---------------------------------
3d normalization pass 1 of 2
white matter peak found at 111
white matter peak found at 109
gm peak at 83 (83), valley at 56 (56)
csf peak at 18, setting threshold to 61
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...
---------------------------------
3d normalization pass 2 of 2
white matter peak found at 111
white matter peak found at 110
gm peak at 84 (84), valley at 36 (36)
csf peak at 18, setting threshold to 62
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...
Done iterating ---------------------------------
writing output to T1.mgz
3D bias adjustment took 2 minutes and 30 seconds.
#--------------------------------------------
#@# Skull Stripping Tue Jul 26 15:11:06 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_em_register -skull nu.mgz /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta

aligning to atlas containing skull, setting unknown_nbr_spacing = 5
reading 1 input volumes...
logging results to talairach_with_skull.log
reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'...
average std = 23.1   using min determinant for regularization = 53.4
0 singular and 5702 ill-conditioned covariance matrices regularized
reading 'nu.mgz'...
freeing gibbs priors...done.
bounding unknown intensity as < 20.2 or > 943.7
total sample mean = 92.0 (1443 zeros)
************************************************
spacing=8, using 3481 sample points, tol=1.00e-05...
************************************************
register_mri: find_optimal_transform
find_optimal_transform: nsamples 3481, passno 0, spacing 8
resetting wm mean[0]: 117 --> 126
resetting gm mean[0]: 74 --> 74
input volume #1 is the most T1-like
using real data threshold=13.0
skull bounding box = (50, 62, 24) --> (214, 200, 218)
using (105, 108, 121) as brain centroid...
mean wm in atlas = 126, using box (85,91,97) --> (125, 124,144) to find MRI wm
before smoothing, mri peak at 104
after smoothing, mri peak at 103, scaling input intensities by 1.223
scaling channel 0 by 1.2233
initial log_p = -4.9
************************************************
First Search limited to translation only.
************************************************
max log p =    -4.602268 @ (-9.091, -27.273, -9.091)
max log p =    -4.602268 @ (0.000, 0.000, 0.000)
max log p =    -4.602268 @ (0.000, 0.000, 0.000)
max log p =    -4.582937 @ (-1.136, -5.682, -1.136)
max log p =    -4.579210 @ (1.705, 0.568, 0.568)
max log p =    -4.579210 @ (0.000, 0.000, 0.000)
Found translation: (-8.5, -32.4, -9.7): log p = -4.579
****************************************
Nine parameter search.  iteration 0 nscales = 0 ...
****************************************
Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.6 (thresh=-4.6)
 1.064   0.000   0.000  -17.083;
 0.000   1.226   0.161  -69.709;
 0.000  -0.139   1.055   7.142;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 1 nscales = 0 ...
****************************************
Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.3 (thresh=-4.3)
 1.064   0.000   0.000  -17.083;
 0.000   1.226   0.161  -69.709;
 0.000  -0.139   1.055   7.142;
 0.000   0.000   0.000   1.000;
reducing scale to 0.2500
****************************************
Nine parameter search.  iteration 2 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.3 (thresh=-4.3)
 1.041  -0.074  -0.044   1.370;
 0.068   1.201   0.154  -76.337;
 0.036  -0.139   1.074   0.155;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 3 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2)
 1.043  -0.041   0.030  -10.105;
 0.033   1.207   0.117  -68.362;
-0.030  -0.093   1.059   4.075;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 4 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2)
 1.043  -0.041   0.030  -10.105;
 0.033   1.207   0.117  -68.362;
-0.030  -0.093   1.059   4.075;
 0.000   0.000   0.000   1.000;
reducing scale to 0.0625
****************************************
Nine parameter search.  iteration 5 nscales = 2 ...
****************************************
Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2)
 1.046  -0.051   0.030  -9.492;
 0.041   1.210   0.118  -70.138;
-0.030  -0.093   1.063   3.716;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 6 nscales = 2 ...
****************************************
Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2)
 1.046  -0.051   0.030  -9.492;
 0.041   1.210   0.118  -70.138;
-0.030  -0.093   1.063   3.716;
 0.000   0.000   0.000   1.000;
min search scale 0.025000 reached
***********************************************
Computing MAP estimate using 3481 samples...
***********************************************
dt = 5.00e-06, momentum=0.80, tol=1.00e-05
l_intensity = 1.0000
Aligning input volume to GCA...
Transform matrix
 1.04625  -0.05111   0.02958  -9.49176;
 0.04149   1.21045   0.11807  -70.13772;
-0.02996  -0.09284   1.06271   3.71645;
 0.00000   0.00000   0.00000   1.00000;
nsamples 3481
Quasinewton: input matrix
 1.04625  -0.05111   0.02958  -9.49176;
 0.04149   1.21045   0.11807  -70.13772;
-0.02996  -0.09284   1.06271   3.71645;
 0.00000   0.00000   0.00000   1.00000;
outof QuasiNewtonEMA: 009: -log(p) =   -0.0  tol 0.000010
Resulting transform:
 1.046  -0.051   0.030  -9.492;
 0.041   1.210   0.118  -70.138;
-0.030  -0.093   1.063   3.716;
 0.000   0.000   0.000   1.000;

pass 1, spacing 8: log(p) = -4.2 (old=-4.9)
transform before final EM align:
 1.046  -0.051   0.030  -9.492;
 0.041   1.210   0.118  -70.138;
-0.030  -0.093   1.063   3.716;
 0.000   0.000   0.000   1.000;

**************************************************
 EM alignment process ...
 Computing final MAP estimate using 382743 samples.
**************************************************
dt = 5.00e-06, momentum=0.80, tol=1.00e-07
l_intensity = 1.0000
Aligning input volume to GCA...
Transform matrix
 1.04625  -0.05111   0.02958  -9.49176;
 0.04149   1.21045   0.11807  -70.13772;
-0.02996  -0.09284   1.06271   3.71645;
 0.00000   0.00000   0.00000   1.00000;
nsamples 382743
Quasinewton: input matrix
 1.04625  -0.05111   0.02958  -9.49176;
 0.04149   1.21045   0.11807  -70.13772;
-0.02996  -0.09284   1.06271   3.71645;
 0.00000   0.00000   0.00000   1.00000;
outof QuasiNewtonEMA: 011: -log(p) =    4.6  tol 0.000000
final transform:
 1.046  -0.051   0.030  -9.492;
 0.041   1.210   0.118  -70.138;
-0.030  -0.093   1.063   3.716;
 0.000   0.000   0.000   1.000;

writing output transformation to transforms/talairach_with_skull.lta...
registration took 25 minutes and 26 seconds.

 mri_watershed -T1 -brain_atlas /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz


Mode:          T1 normalized volume
Mode:          Use the information of atlas (default parms, --help for details)

*********************************************************
The input file is T1.mgz
The output file is brainmask.auto.mgz
Weighting the input with atlas information before watershed

*************************WATERSHED**************************
Sorting...
      first estimation of the COG coord: x=133 y=138 z=113 r=67
      first estimation of the main basin volume: 1293178 voxels
      Looking for seedpoints
        2 found in the cerebellum
        17 found in the rest of the brain
      global maximum in x=113, y=123, z=82, Imax=255
      CSF=22, WM_intensity=110, WM_VARIANCE=5
      WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110
      preflooding height equal to 10 percent
done.
Analyze...

      main basin size=-1748677649 voxels, voxel volume =1.000
                     = 2546289647 mmm3 = 2546289.664 cm3
done.
PostAnalyze...Basin Prior
 193 basins merged thanks to atlas
      ***** 0 basin(s) merged in 1 iteration(s)
      ***** 0 voxel(s) added to the main basin
done.
Weighting the input with prior template

****************TEMPLATE DEFORMATION****************

      second estimation of the COG coord: x=133,y=138, z=112, r=9258 iterations
^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^

   GLOBAL      CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 43146
  RIGHT_CER    CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = -2147481182
  LEFT_CER     CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 2538
 RIGHT_BRAIN   CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = -1216444324
 LEFT_BRAIN    CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = -1077560132
    OTHER      CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 804540128
   
                     CSF_MAX  TRANSITION  GM_MIN  GM
    GLOBAL     
  before analyzing :    4,      7,        55,   80
  after  analyzing :    4,      39,        55,   49
   RIGHT_CER   
  before analyzing :    3,      5,        64,   87
  after  analyzing :    3,      44,        64,   54
   LEFT_CER    
  before analyzing :    3,      5,        67,   91
  after  analyzing :    3,      46,        67,   57
  RIGHT_BRAIN  
  before analyzing :    4,      7,        54,   81
  after  analyzing :    4,      38,        54,   48
  LEFT_BRAIN   
  before analyzing :    4,      7,        55,   79
  after  analyzing :    4,      39,        55,   49
     OTHER     
  before analyzing :    3,      4,        48,   92
  after  analyzing :    3,      33,        48,   47
      mri_strip_skull: done peeling brain
      highly tesselated surface with 10242 vertices
      matching...57 iterations

*********************VALIDATION*********************
curvature mean = -0.014, std = 0.010
curvature mean = 68.871, std = 6.895

No Rigid alignment: -atlas Mode Off (basic atlas / no registration)
      before rotation: sse = 3.12, sigma = 4.83
      after  rotation: sse = 3.12, sigma = 4.83
Localization of inacurate regions: Erosion-Dilation steps
      the sse mean is  3.18, its var is  3.95   
      before Erosion-Dilatation  0.19% of inacurate vertices
      after  Erosion-Dilatation  0.00% of inacurate vertices
      Validation of the shape of the surface done.
Scaling of atlas fields onto current surface fields

********FINAL ITERATIVE TEMPLATE DEFORMATION********
Compute Local values csf/gray
Fine Segmentation...37 iterations

      mri_strip_skull: done peeling brain

Brain Size = 1504429 voxels, voxel volume = 1.000 mm3
           = 1504429 mmm3 = 1504.429 cm3


******************************
Saving brainmask.auto.mgz
done

 cp brainmask.auto.mgz brainmask.mgz

#-------------------------------------
#@# EM Registration Tue Jul 26 15:36:54 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta

aligning to atlas containing skull, setting unknown_nbr_spacing = 3
using MR volume brainmask.mgz to mask input volume...
reading 1 input volumes...
logging results to talairach.log
reading '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'...
average std = 6.9   using min determinant for regularization = 4.7
0 singular and 1812 ill-conditioned covariance matrices regularized
reading 'nu.mgz'...
freeing gibbs priors...done.
bounding unknown intensity as < 14.9 or > 790.2
total sample mean = 84.4 (994 zeros)
************************************************
spacing=8, using 2772 sample points, tol=1.00e-05...
************************************************
register_mri: find_optimal_transform
find_optimal_transform: nsamples 2772, passno 0, spacing 8
resetting wm mean[0]: 102 --> 107
resetting gm mean[0]: 64 --> 64
input volume #1 is the most T1-like
using real data threshold=14.0
skull bounding box = (66, 78, 37) --> (199, 200, 200)
using (110, 119, 119) as brain centroid...
mean wm in atlas = 107, using box (94,104,99) --> (126, 133,139) to find MRI wm
before smoothing, mri peak at 106
after smoothing, mri peak at 105, scaling input intensities by 1.019
scaling channel 0 by 1.01905
initial log_p = -4.6
************************************************
First Search limited to translation only.
************************************************
max log p =    -3.918804 @ (-9.091, -27.273, -9.091)
max log p =    -3.918804 @ (0.000, 0.000, 0.000)
max log p =    -3.908406 @ (-2.273, -2.273, 2.273)
max log p =    -3.878692 @ (1.136, 5.682, 3.409)
max log p =    -3.869436 @ (1.705, -0.568, 1.705)
max log p =    -3.869436 @ (0.000, 0.000, 0.000)
Found translation: (-8.5, -24.4, -1.7): log p = -3.869
****************************************
Nine parameter search.  iteration 0 nscales = 0 ...
****************************************
Result so far: scale 1.000: max_log_p=-3.6, old_max_log_p =-3.9 (thresh=-3.9)
 1.075   0.000   0.000  -18.673;
 0.000   1.135   0.169  -61.880;
 0.000  -0.120   1.071   0.363;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 1 nscales = 0 ...
****************************************
Result so far: scale 1.000: max_log_p=-3.6, old_max_log_p =-3.6 (thresh=-3.6)
 1.075   0.000   0.000  -18.673;
 0.000   1.135   0.169  -61.880;
 0.000  -0.111   0.991   8.235;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 2 nscales = 0 ...
****************************************
Result so far: scale 1.000: max_log_p=-3.6, old_max_log_p =-3.6 (thresh=-3.6)
 1.075   0.000   0.000  -18.673;
 0.000   1.135   0.169  -61.880;
 0.000  -0.111   0.991   8.235;
 0.000   0.000   0.000   1.000;
reducing scale to 0.2500
****************************************
Nine parameter search.  iteration 3 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-3.6, old_max_log_p =-3.6 (thresh=-3.6)
 1.074  -0.036  -0.037  -9.137;
 0.034   1.158   0.137  -64.267;
 0.036  -0.077   1.014  -2.258;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 4 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-3.6, old_max_log_p =-3.6 (thresh=-3.6)
 1.054  -0.039  -0.004  -9.776;
 0.036   1.155   0.170  -67.689;
-0.000  -0.115   1.028   6.475;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 5 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-3.5, old_max_log_p =-3.6 (thresh=-3.5)
 1.054  -0.039  -0.004  -9.776;
 0.036   1.177   0.173  -71.187;
-0.000  -0.117   1.048   4.621;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 6 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5)
 1.054  -0.039  -0.004  -9.776;
 0.036   1.177   0.173  -71.187;
-0.000  -0.117   1.048   4.621;
 0.000   0.000   0.000   1.000;
reducing scale to 0.0625
****************************************
Nine parameter search.  iteration 7 nscales = 2 ...
****************************************
Result so far: scale 0.062: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5)
 1.054  -0.049  -0.005  -8.206;
 0.045   1.178   0.173  -72.971;
-0.000  -0.118   1.049   3.552;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 8 nscales = 2 ...
****************************************
Result so far: scale 0.062: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5)
 1.054  -0.049  -0.005  -8.206;
 0.045   1.178   0.173  -72.971;
-0.000  -0.117   1.048   3.671;
 0.000   0.000   0.000   1.000;
min search scale 0.025000 reached
***********************************************
Computing MAP estimate using 2772 samples...
***********************************************
dt = 5.00e-06, momentum=0.80, tol=1.00e-05
l_intensity = 1.0000
Aligning input volume to GCA...
Transform matrix
 1.05393  -0.04880  -0.00547  -8.20587;
 0.04497   1.17771   0.17309  -72.97125;
-0.00049  -0.11745   1.04778   3.67117;
 0.00000   0.00000   0.00000   1.00000;
nsamples 2772
Quasinewton: input matrix
 1.05393  -0.04880  -0.00547  -8.20587;
 0.04497   1.17771   0.17309  -72.97125;
-0.00049  -0.11745   1.04778   3.67117;
 0.00000   0.00000   0.00000   1.00000;
outof QuasiNewtonEMA: 011: -log(p) =   -0.0  tol 0.000010
Resulting transform:
 1.054  -0.049  -0.005  -8.206;
 0.045   1.178   0.173  -72.971;
-0.000  -0.117   1.048   3.671;
 0.000   0.000   0.000   1.000;

pass 1, spacing 8: log(p) = -3.5 (old=-4.6)
transform before final EM align:
 1.054  -0.049  -0.005  -8.206;
 0.045   1.178   0.173  -72.971;
-0.000  -0.117   1.048   3.671;
 0.000   0.000   0.000   1.000;

**************************************************
 EM alignment process ...
 Computing final MAP estimate using 312841 samples.
**************************************************
dt = 5.00e-06, momentum=0.80, tol=1.00e-07
l_intensity = 1.0000
Aligning input volume to GCA...
Transform matrix
 1.05393  -0.04880  -0.00547  -8.20587;
 0.04497   1.17771   0.17309  -72.97125;
-0.00049  -0.11745   1.04778   3.67117;
 0.00000   0.00000   0.00000   1.00000;
nsamples 312841
Quasinewton: input matrix
 1.05393  -0.04880  -0.00547  -8.20587;
 0.04497   1.17771   0.17309  -72.97125;
-0.00049  -0.11745   1.04778   3.67117;
 0.00000   0.00000   0.00000   1.00000;
dfp_em_step_func: 012: -log(p) = 4.0
after pass:transform: ( 1.05, -0.05, -0.01, -8.21)
                      ( 0.04, 1.18, 0.17, -72.97)
                      ( -0.00, -0.12, 1.05, 3.67)
dfp_em_step_func: 013: -log(p) = 4.0
after pass:transform: ( 1.05, -0.05, -0.01, -8.21)
                      ( 0.04, 1.18, 0.17, -72.97)
                      ( -0.00, -0.12, 1.05, 3.67)
pass 2 through quasi-newton minimization...
outof QuasiNewtonEMA: 015: -log(p) =    4.0  tol 0.000000
final transform:
 1.054  -0.049  -0.005  -8.206;
 0.045   1.178   0.173  -72.971;
-0.000  -0.117   1.048   3.671;
 0.000   0.000   0.000   1.000;

writing output transformation to transforms/talairach.lta...
registration took 26 minutes and 25 seconds.
#--------------------------------------
#@# CA Normalize Tue Jul 26 16:03:19 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta norm.mgz

writing control point volume to ctrl_pts.mgz
using MR volume brainmask.mgz to mask input volume...
reading 1 input volume
reading atlas from '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'...
reading transform from 'transforms/talairach.lta'...
reading input volume from nu.mgz...
resetting wm mean[0]: 102 --> 107
resetting gm mean[0]: 64 --> 64
input volume #1 is the most T1-like
using real data threshold=14.0
skull bounding box = (66, 78, 37) --> (199, 200, 200)
using (110, 119, 119) as brain centroid...
mean wm in atlas = 107, using box (94,104,99) --> (126, 133,139) to find MRI wm
before smoothing, mri peak at 106
after smoothing, mri peak at 105, scaling input intensities by 1.019
scaling channel 0 by 1.01905
using 244171 sample points...
INFO: compute sample coordinates transform
 1.054  -0.049  -0.005  -8.206;
 0.045   1.178   0.173  -72.971;
-0.000  -0.117   1.048   3.671;
 0.000   0.000   0.000   1.000;
INFO: transform used
finding control points in Left_Cerebral_White_Matter....
found 41584 control points for structure...
bounding box (133, 84, 39) --> (198, 180, 197)
Left_Cerebral_White_Matter: limiting intensities to 96.0 --> 255.0
0 of 1427 (0.0%) samples deleted
finding control points in Right_Cerebral_White_Matter....
found 40735 control points for structure...
bounding box (73, 87, 39) --> (135, 183, 197)
Right_Cerebral_White_Matter: limiting intensities to 97.0 --> 255.0
2 of 1388 (0.1%) samples deleted
finding control points in Left_Cerebellum_White_Matter....
found 3012 control points for structure...
bounding box (137, 158, 63) --> (184, 195, 114)
Left_Cerebellum_White_Matter: limiting intensities to 97.0 --> 255.0
0 of 70 (0.0%) samples deleted
finding control points in Right_Cerebellum_White_Matter....
found 2764 control points for structure...
bounding box (93, 158, 61) --> (136, 196, 114)
Right_Cerebellum_White_Matter: limiting intensities to 97.0 --> 255.0
0 of 58 (0.0%) samples deleted
finding control points in Brain_Stem....
found 3520 control points for structure...
bounding box (120, 151, 96) --> (151, 210, 125)
Brain_Stem: limiting intensities to 95.0 --> 255.0
0 of 143 (0.0%) samples deleted
using 3086 total control points for intensity normalization...
bias field = 0.988 +- 0.060
4 of 3084 control points discarded
finding control points in Left_Cerebral_White_Matter....
found 41584 control points for structure...
bounding box (133, 84, 39) --> (198, 180, 197)
Left_Cerebral_White_Matter: limiting intensities to 95.0 --> 255.0
0 of 1464 (0.0%) samples deleted
finding control points in Right_Cerebral_White_Matter....
found 40735 control points for structure...
bounding box (73, 87, 39) --> (135, 183, 197)
Right_Cerebral_White_Matter: limiting intensities to 94.0 --> 255.0
4 of 1515 (0.3%) samples deleted
finding control points in Left_Cerebellum_White_Matter....
found 3012 control points for structure...
bounding box (137, 158, 63) --> (184, 195, 114)
Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 255.0
4 of 88 (4.5%) samples deleted
finding control points in Right_Cerebellum_White_Matter....
found 2764 control points for structure...
bounding box (93, 158, 61) --> (136, 196, 114)
Right_Cerebellum_White_Matter: limiting intensities to 86.0 --> 255.0
0 of 70 (0.0%) samples deleted
finding control points in Brain_Stem....
found 3520 control points for structure...
bounding box (120, 151, 96) --> (151, 210, 125)
Brain_Stem: limiting intensities to 83.0 --> 255.0
0 of 188 (0.0%) samples deleted
using 3325 total control points for intensity normalization...
bias field = 1.008 +- 0.046
16 of 3317 control points discarded
finding control points in Left_Cerebral_White_Matter....
found 41584 control points for structure...
bounding box (133, 84, 39) --> (198, 180, 197)
Left_Cerebral_White_Matter: limiting intensities to 94.0 --> 255.0
4 of 1523 (0.3%) samples deleted
finding control points in Right_Cerebral_White_Matter....
found 40735 control points for structure...
bounding box (73, 87, 39) --> (135, 183, 197)
Right_Cerebral_White_Matter: limiting intensities to 95.0 --> 255.0
1 of 1542 (0.1%) samples deleted
finding control points in Left_Cerebellum_White_Matter....
found 3012 control points for structure...
bounding box (137, 158, 63) --> (184, 195, 114)
Left_Cerebellum_White_Matter: limiting intensities to 85.0 --> 255.0
0 of 101 (0.0%) samples deleted
finding control points in Right_Cerebellum_White_Matter....
found 2764 control points for structure...
bounding box (93, 158, 61) --> (136, 196, 114)
Right_Cerebellum_White_Matter: limiting intensities to 83.0 --> 255.0
0 of 82 (0.0%) samples deleted
finding control points in Brain_Stem....
found 3520 control points for structure...
bounding box (120, 151, 96) --> (151, 210, 125)
Brain_Stem: limiting intensities to 78.0 --> 255.0
0 of 241 (0.0%) samples deleted
using 3489 total control points for intensity normalization...
bias field = 1.005 +- 0.038
14 of 3484 control points discarded
writing normalized volume to norm.mgz...
writing control points to ctrl_pts.mgz
freeing GCA...done.
normalization took 1 minutes and 45 seconds.
#--------------------------------------
#@# CA Reg Tue Jul 26 16:05:04 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.m3z

not handling expanded ventricles...
using previously computed transform transforms/talairach.lta
renormalizing sequences with structure alignment, equivalent to:
    -renormalize
    -regularize_mean 0.500
    -regularize 0.500
using MR volume brainmask.mgz to mask input volume...
reading 1 input volumes...
logging results to talairach.log
reading input volume 'norm.mgz'...
reading GCA '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'...
label assignment complete, 0 changed (0.00%)
det(m_affine) = 1.32 (predicted orig area = 6.0)
label assignment complete, 0 changed (0.00%)
freeing gibbs priors...done.
average std[0] = 5.0
**************** pass 1 of 1 ************************
setting smoothness coefficient to 0.039
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.946, neg=0, invalid=96777
0001: dt=129.472000, rms=0.895 (5.353%), neg=0, invalid=96777
0002: dt=295.936000, rms=0.855 (4.437%), neg=0, invalid=96777
0003: dt=92.480000, rms=0.844 (1.331%), neg=0, invalid=96777
0004: dt=517.888000, rms=0.827 (1.978%), neg=0, invalid=96777
0005: dt=73.984000, rms=0.825 (0.231%), neg=0, invalid=96777
0006: dt=73.984000, rms=0.823 (0.276%), neg=0, invalid=96777
0007: dt=73.984000, rms=0.820 (0.399%), neg=0, invalid=96777
0008: dt=73.984000, rms=0.816 (0.453%), neg=0, invalid=96777
0009: dt=73.984000, rms=0.812 (0.486%), neg=0, invalid=96777
0010: dt=73.984000, rms=0.808 (0.453%), neg=0, invalid=96777
0011: dt=73.984000, rms=0.805 (0.357%), neg=0, invalid=96777
0012: dt=73.984000, rms=0.803 (0.256%), neg=0, invalid=96777
0013: dt=73.984000, rms=0.801 (0.267%), neg=0, invalid=96777
0014: dt=73.984000, rms=0.798 (0.438%), neg=0, invalid=96777
0015: dt=73.984000, rms=0.794 (0.507%), neg=0, invalid=96777
0016: dt=73.984000, rms=0.791 (0.337%), neg=0, invalid=96777
0017: dt=73.984000, rms=0.789 (0.190%), neg=0, invalid=96777
0018: dt=73.984000, rms=0.789 (0.095%), neg=0, invalid=96777
0019: dt=73.984000, rms=0.787 (0.166%), neg=0, invalid=96777
0020: dt=73.984000, rms=0.784 (0.382%), neg=0, invalid=96777
0021: dt=73.984000, rms=0.783 (0.173%), neg=0, invalid=96777
0022: dt=73.984000, rms=0.783 (-0.012%), neg=0, invalid=96777
0023: dt=0.000000, rms=0.783 (0.000%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.783, neg=0, invalid=96777
0024: dt=129.472000, rms=0.781 (0.253%), neg=0, invalid=96777
0025: dt=517.888000, rms=0.779 (0.275%), neg=0, invalid=96777
0026: dt=92.480000, rms=0.779 (0.043%), neg=0, invalid=96777
0027: dt=92.480000, rms=0.778 (0.095%), neg=0, invalid=96777
0028: dt=92.480000, rms=0.777 (0.134%), neg=0, invalid=96777
0029: dt=92.480000, rms=0.776 (0.135%), neg=0, invalid=96777
0030: dt=92.480000, rms=0.775 (0.110%), neg=0, invalid=96777
0031: dt=92.480000, rms=0.774 (0.126%), neg=0, invalid=96777
0032: dt=92.480000, rms=0.773 (0.159%), neg=0, invalid=96777
0033: dt=92.480000, rms=0.771 (0.168%), neg=0, invalid=96777
0034: dt=92.480000, rms=0.770 (0.123%), neg=0, invalid=96777
0035: dt=92.480000, rms=0.770 (0.080%), neg=0, invalid=96777
0036: dt=517.888000, rms=0.768 (0.280%), neg=0, invalid=96777
0037: dt=0.000000, rms=0.768 (-0.003%), neg=0, invalid=96777
0038: dt=0.850000, rms=0.768 (-0.000%), neg=0, invalid=96777
setting smoothness coefficient to 0.154
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.773, neg=0, invalid=96777
0039: dt=20.736000, rms=0.771 (0.210%), neg=0, invalid=96777
0040: dt=124.416000, rms=0.764 (0.915%), neg=0, invalid=96777
0041: dt=124.416000, rms=0.752 (1.629%), neg=0, invalid=96777
0042: dt=36.288000, rms=0.748 (0.530%), neg=0, invalid=96777
0043: dt=62.208000, rms=0.745 (0.328%), neg=0, invalid=96777
0044: dt=36.288000, rms=0.743 (0.323%), neg=0, invalid=96777
0045: dt=124.416000, rms=0.739 (0.509%), neg=0, invalid=96777
0046: dt=15.552000, rms=0.738 (0.120%), neg=0, invalid=96777
0047: dt=15.552000, rms=0.737 (0.172%), neg=0, invalid=96777
0048: dt=15.552000, rms=0.736 (0.155%), neg=0, invalid=96777
0049: dt=15.552000, rms=0.736 (0.036%), neg=0, invalid=96777
0050: dt=15.552000, rms=0.735 (0.119%), neg=0, invalid=96777
0051: dt=15.552000, rms=0.733 (0.280%), neg=0, invalid=96777
0052: dt=15.552000, rms=0.730 (0.408%), neg=0, invalid=96777
0053: dt=15.552000, rms=0.727 (0.350%), neg=0, invalid=96777
0054: dt=15.552000, rms=0.726 (0.184%), neg=0, invalid=96777
0055: dt=15.552000, rms=0.724 (0.202%), neg=0, invalid=96777
0056: dt=15.552000, rms=0.723 (0.240%), neg=0, invalid=96777
0057: dt=15.552000, rms=0.721 (0.272%), neg=0, invalid=96777
0058: dt=15.552000, rms=0.720 (0.128%), neg=0, invalid=96777
0059: dt=15.552000, rms=0.719 (0.068%), neg=0, invalid=96777
0060: dt=15.552000, rms=0.718 (0.200%), neg=0, invalid=96777
0061: dt=15.552000, rms=0.716 (0.285%), neg=0, invalid=96777
0062: dt=15.552000, rms=0.714 (0.255%), neg=0, invalid=96777
0063: dt=15.552000, rms=0.713 (0.139%), neg=0, invalid=96777
0064: dt=15.552000, rms=0.712 (0.146%), neg=0, invalid=96777
0065: dt=15.552000, rms=0.711 (0.134%), neg=0, invalid=96777
0066: dt=15.552000, rms=0.711 (0.051%), neg=0, invalid=96777
0067: dt=15.552000, rms=0.710 (0.040%), neg=0, invalid=96777
0068: dt=25.920000, rms=0.710 (0.058%), neg=0, invalid=96777
0069: dt=103.680000, rms=0.709 (0.082%), neg=0, invalid=96777
0070: dt=36.288000, rms=0.709 (0.031%), neg=0, invalid=96777
0071: dt=36.288000, rms=0.709 (0.047%), neg=0, invalid=96777
0072: dt=36.288000, rms=0.709 (0.038%), neg=0, invalid=96777
0073: dt=36.288000, rms=0.708 (0.035%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.708, neg=0, invalid=96777
0074: dt=20.736000, rms=0.708 (0.106%), neg=0, invalid=96777
0075: dt=36.288000, rms=0.707 (0.045%), neg=0, invalid=96777
0076: dt=36.288000, rms=0.707 (0.078%), neg=0, invalid=96777
0077: dt=36.288000, rms=0.706 (0.044%), neg=0, invalid=96777
0078: dt=36.288000, rms=0.706 (0.028%), neg=0, invalid=96777
setting smoothness coefficient to 0.588
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.736, neg=0, invalid=96777
0079: dt=9.600000, rms=0.734 (0.283%), neg=0, invalid=96777
0080: dt=11.200000, rms=0.732 (0.203%), neg=0, invalid=96777
0081: dt=11.200000, rms=0.731 (0.137%), neg=0, invalid=96777
0082: dt=11.200000, rms=0.730 (0.162%), neg=0, invalid=96777
0083: dt=11.200000, rms=0.730 (0.046%), neg=0, invalid=96777
0084: dt=11.200000, rms=0.729 (0.087%), neg=0, invalid=96777
0085: dt=11.200000, rms=0.727 (0.374%), neg=0, invalid=96777
0086: dt=11.200000, rms=0.722 (0.604%), neg=0, invalid=96777
0087: dt=11.200000, rms=0.718 (0.639%), neg=0, invalid=96777
0088: dt=11.200000, rms=0.714 (0.493%), neg=0, invalid=96777
0089: dt=11.200000, rms=0.714 (-0.122%), neg=0, invalid=96777
0090: dt=0.000000, rms=0.714 (0.000%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.714, neg=0, invalid=96777
0091: dt=0.000000, rms=0.714 (0.000%), neg=0, invalid=96777
setting smoothness coefficient to 2.000
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.763, neg=0, invalid=96777
0092: dt=0.000000, rms=0.763 (0.000%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.763, neg=0, invalid=96777
0093: dt=0.000000, rms=0.763 (0.000%), neg=0, invalid=96777
setting smoothness coefficient to 5.000
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.859, neg=0, invalid=96777
0094: dt=0.726257, rms=0.847 (1.377%), neg=0, invalid=96777
0095: dt=0.683824, rms=0.843 (0.492%), neg=0, invalid=96777
0096: dt=0.839695, rms=0.842 (0.144%), neg=0, invalid=96777
0097: dt=0.839695, rms=0.841 (0.101%), neg=0, invalid=96777
0098: dt=0.839695, rms=0.841 (-0.043%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.841, neg=0, invalid=96777
0099: dt=1.536000, rms=0.837 (0.508%), neg=0, invalid=96777
0100: dt=0.000000, rms=0.837 (0.000%), neg=0, invalid=96777
0101: dt=0.100000, rms=0.837 (-0.007%), neg=0, invalid=96777
resetting metric properties...
setting smoothness coefficient to 10.000
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.776, neg=0, invalid=96777
0102: dt=0.020000, rms=0.774 (0.222%), neg=0, invalid=96777
0103: dt=0.112000, rms=0.766 (1.032%), neg=0, invalid=96777
0104: dt=0.028000, rms=0.766 (0.055%), neg=0, invalid=96777
0105: dt=0.028000, rms=0.765 (0.056%), neg=0, invalid=96777
0106: dt=0.028000, rms=0.765 (0.102%), neg=0, invalid=96777
0107: dt=0.014000, rms=0.765 (0.026%), neg=0, invalid=96777
0108: dt=0.014000, rms=0.764 (0.025%), neg=0, invalid=96777
0109: dt=0.100357, rms=0.763 (0.173%), neg=0, invalid=96777
0110: dt=0.028000, rms=0.763 (0.040%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.763, neg=0, invalid=96777
0111: dt=0.028000, rms=0.762 (0.142%), neg=0, invalid=96777
0112: dt=0.028000, rms=0.761 (0.106%), neg=0, invalid=96777
0113: dt=0.028000, rms=0.760 (0.079%), neg=0, invalid=96777
0114: dt=0.028000, rms=0.760 (0.061%), neg=0, invalid=96777
0115: dt=0.028000, rms=0.759 (0.050%), neg=0, invalid=96777
renormalizing by structure alignment....
renormalizing input #0
gca peak = 0.11725 (24)
mri peak = 0.17390 (20)
Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2248 voxels, overlap=0.005)
Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2248 voxels, peak = 16), gca=16.4
gca peak = 0.14022 (22)
mri peak = 0.20914 (20)
Right_Lateral_Ventricle (43): linear fit = 0.71 x + 0.0 (1108 voxels, overlap=0.088)
Right_Lateral_Ventricle (43): linear fit = 0.71 x + 0.0 (1108 voxels, peak = 16), gca=15.7
gca peak = 0.24234 (100)
mri peak = 0.10874 (100)
Right_Pallidum (52): linear fit = 1.01 x + 0.0 (469 voxels, overlap=0.779)
Right_Pallidum (52): linear fit = 1.01 x + 0.0 (469 voxels, peak = 102), gca=101.5
gca peak = 0.19192 (97)
mri peak = 0.12235 (101)
Left_Pallidum (13): linear fit = 1.04 x + 0.0 (448 voxels, overlap=0.692)
Left_Pallidum (13): linear fit = 1.04 x + 0.0 (448 voxels, peak = 101), gca=101.4
gca peak = 0.24007 (63)
mri peak = 0.07625 (72)
Right_Hippocampus (53): linear fit = 1.13 x + 0.0 (740 voxels, overlap=0.412)
Right_Hippocampus (53): linear fit = 1.13 x + 0.0 (740 voxels, peak = 72), gca=71.5
gca peak = 0.29892 (64)
mri peak = 0.07454 (76)
Left_Hippocampus (17): linear fit = 1.09 x + 0.0 (739 voxels, overlap=0.295)
Left_Hippocampus (17): linear fit = 1.09 x + 0.0 (739 voxels, peak = 69), gca=69.4
gca peak = 0.12541 (104)
mri peak = 0.08616 (108)
Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (71705 voxels, overlap=0.812)
Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (71705 voxels, peak = 108), gca=107.6
gca peak = 0.13686 (104)
mri peak = 0.06864 (107)
Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (79408 voxels, overlap=0.824)
Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (79408 voxels, peak = 108), gca=107.6
gca peak = 0.11691 (63)
mri peak = 0.03541 (84)
Left_Cerebral_Cortex (3): linear fit = 1.29 x + 0.0 (34422 voxels, overlap=0.022)
Left_Cerebral_Cortex (3): linear fit = 1.29 x + 0.0 (34422 voxels, peak = 82), gca=81.6
gca peak = 0.13270 (63)
mri peak = 0.03643 (79)
Right_Cerebral_Cortex (42): linear fit = 1.25 x + 0.0 (38784 voxels, overlap=0.004)
Right_Cerebral_Cortex (42): linear fit = 1.25 x + 0.0 (38784 voxels, peak = 78), gca=78.4
gca peak = 0.15182 (70)
mri peak = 0.10714 (92)
Right_Caudate (50): linear fit = 1.30 x + 0.0 (449 voxels, overlap=0.019)
Right_Caudate (50): linear fit = 1.30 x + 0.0 (449 voxels, peak = 91), gca=91.3
gca peak = 0.14251 (76)
mri peak = 0.12248 (92)
Left_Caudate (11): linear fit = 1.16 x + 0.0 (651 voxels, overlap=0.063)
Left_Caudate (11): linear fit = 1.16 x + 0.0 (651 voxels, peak = 89), gca=88.5
gca peak = 0.12116 (60)
mri peak = 0.05873 (77)
Left_Cerebellum_Cortex (8): linear fit = 1.28 x + 0.0 (15242 voxels, overlap=0.001)
Left_Cerebellum_Cortex (8): linear fit = 1.28 x + 0.0 (15242 voxels, peak = 77), gca=77.1
gca peak = 0.12723 (61)
mri peak = 0.04905 (75)
Right_Cerebellum_Cortex (47): linear fit = 1.25 x + 0.0 (20732 voxels, overlap=0.007)
Right_Cerebellum_Cortex (47): linear fit = 1.25 x + 0.0 (20732 voxels, peak = 76), gca=75.9
gca peak = 0.22684 (88)
mri peak = 0.07075 (93)
Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (8742 voxels, overlap=0.583)
Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (8742 voxels, peak = 95), gca=95.5
gca peak = 0.21067 (87)
mri peak = 0.08885 (91)
Right_Cerebellum_White_Matter (46): linear fit = 1.04 x + 0.0 (7107 voxels, overlap=0.731)
Right_Cerebellum_White_Matter (46): linear fit = 1.04 x + 0.0 (7107 voxels, peak = 91), gca=90.9
gca peak = 0.25455 (62)
mri peak = 0.08906 (75)
Left_Amygdala (18): linear fit = 1.13 x + 0.0 (389 voxels, overlap=0.874)
Left_Amygdala (18): linear fit = 1.13 x + 0.0 (389 voxels, peak = 70), gca=70.4
gca peak = 0.39668 (62)
mri peak = 0.16000 (70)
Right_Amygdala (54): linear fit = 1.11 x + 0.0 (223 voxels, overlap=0.400)
Right_Amygdala (54): linear fit = 1.11 x + 0.0 (223 voxels, peak = 69), gca=68.5
gca peak = 0.10129 (93)
mri peak = 0.07850 (104)
Left_Thalamus_Proper (10): linear fit = 1.12 x + 0.0 (4982 voxels, overlap=0.323)
Left_Thalamus_Proper (10): linear fit = 1.12 x + 0.0 (4982 voxels, peak = 105), gca=104.6
gca peak = 0.12071 (89)
mri peak = 0.06578 (103)
Right_Thalamus_Proper (49): linear fit = 1.14 x + 0.0 (3424 voxels, overlap=0.358)
Right_Thalamus_Proper (49): linear fit = 1.14 x + 0.0 (3424 voxels, peak = 102), gca=101.9
gca peak = 0.13716 (82)
mri peak = 0.07176 (88)
Left_Putamen (12): linear fit = 1.10 x + 0.0 (2608 voxels, overlap=0.378)
Left_Putamen (12): linear fit = 1.10 x + 0.0 (2608 voxels, peak = 90), gca=89.8
gca peak = 0.15214 (84)
mri peak = 0.05370 (90)
Right_Putamen (51): linear fit = 1.12 x + 0.0 (2566 voxels, overlap=0.460)
Right_Putamen (51): linear fit = 1.12 x + 0.0 (2566 voxels, peak = 94), gca=94.5
gca peak = 0.08983 (85)
mri peak = 0.07137 (95)
Brain_Stem (16): linear fit = 1.11 x + 0.0 (10818 voxels, overlap=0.468)
Brain_Stem (16): linear fit = 1.11 x + 0.0 (10818 voxels, peak = 94), gca=93.9
gca peak = 0.11809 (92)
mri peak = 0.08635 (99)
Right_VentralDC (60): linear fit = 1.12 x + 0.0 (644 voxels, overlap=0.019)
Right_VentralDC (60): linear fit = 1.12 x + 0.0 (644 voxels, peak = 103), gca=102.6
gca peak = 0.12914 (94)
mri peak = 0.09862 (104)
Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1037 voxels, overlap=0.143)
Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1037 voxels, peak = 103), gca=102.9
gca peak = 0.21100 (36)
uniform distribution in MR - rejecting arbitrary fit
gca peak = 0.13542 (27)
mri peak = 0.21795 (20)
Fourth_Ventricle (15): linear fit = 0.68 x + 0.0 (450 voxels, overlap=0.018)
Fourth_Ventricle (15): linear fit = 0.68 x + 0.0 (450 voxels, peak = 18), gca=18.2
gca peak Unknown = 0.94427 ( 0)
gca peak Left_Inf_Lat_Vent = 0.21802 (40)
gca peak Third_Ventricle = 0.21100 (36)
gca peak CSF = 0.17123 (45)
gca peak Left_Accumbens_area = 0.25875 (69)
gca peak Left_undetermined = 0.96240 (36)
gca peak Left_vessel = 0.33262 (65)
gca peak Left_choroid_plexus = 0.09846 (46)
gca peak Right_Inf_Lat_Vent = 0.28113 (34)
gca peak Right_Accumbens_area = 0.27120 (72)
gca peak Right_vessel = 0.61915 (60)
gca peak Right_choroid_plexus = 0.12775 (51)
gca peak Fifth_Ventricle = 0.45329 (44)
gca peak WM_hypointensities = 0.11729 (81)
gca peak non_WM_hypointensities = 0.10912 (56)
gca peak Optic_Chiasm = 0.33287 (75)
label assignment complete, 0 changed (0.00%)
not using caudate to estimate GM means
estimating mean gm scale to be 1.17 x + 0.0
estimating mean wm scale to be 1.03 x + 0.0
estimating mean csf scale to be 0.69 x + 0.0
saving intensity scales to talairach.label_intensities.txt
**************** pass 1 of 1 ************************
setting smoothness coefficient to 0.008
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.790, neg=0, invalid=96777
0116: dt=73.984000, rms=0.765 (3.083%), neg=0, invalid=96777
0117: dt=129.472000, rms=0.761 (0.511%), neg=0, invalid=96777
0118: dt=517.888000, rms=0.746 (1.994%), neg=0, invalid=96777
0119: dt=73.984000, rms=0.743 (0.393%), neg=0, invalid=96777
0120: dt=129.472000, rms=0.742 (0.202%), neg=0, invalid=96777
0121: dt=369.920000, rms=0.738 (0.520%), neg=0, invalid=96777
0122: dt=73.984000, rms=0.735 (0.336%), neg=0, invalid=96777
0123: dt=517.888000, rms=0.733 (0.398%), neg=0, invalid=96777
0124: dt=110.976000, rms=0.730 (0.311%), neg=0, invalid=96777
0125: dt=92.480000, rms=0.730 (0.099%), neg=0, invalid=96777
0126: dt=517.888000, rms=0.727 (0.319%), neg=0, invalid=96777
0127: dt=55.488000, rms=0.726 (0.213%), neg=0, invalid=96777
0128: dt=517.888000, rms=0.724 (0.254%), neg=0, invalid=96777
0129: dt=92.480000, rms=0.723 (0.179%), neg=0, invalid=96777
0130: dt=129.472000, rms=0.722 (0.069%), neg=0, invalid=96777
0131: dt=129.472000, rms=0.721 (0.130%), neg=0, invalid=96777
0132: dt=110.976000, rms=0.721 (0.056%), neg=0, invalid=96777
0133: dt=221.952000, rms=0.720 (0.121%), neg=0, invalid=96777
0134: dt=73.984000, rms=0.719 (0.074%), neg=0, invalid=96777
0135: dt=2071.552000, rms=0.715 (0.660%), neg=0, invalid=96777
0136: dt=73.984000, rms=0.712 (0.384%), neg=0, invalid=96777
0137: dt=129.472000, rms=0.710 (0.197%), neg=0, invalid=96777
0138: dt=92.480000, rms=0.710 (0.013%), neg=0, invalid=96777
0139: dt=92.480000, rms=0.710 (0.037%), neg=0, invalid=96777
0140: dt=92.480000, rms=0.710 (0.056%), neg=0, invalid=96777
0141: dt=92.480000, rms=0.709 (0.071%), neg=0, invalid=96777
0142: dt=92.480000, rms=0.709 (0.091%), neg=0, invalid=96777
0143: dt=92.480000, rms=0.708 (0.111%), neg=0, invalid=96777
0144: dt=92.480000, rms=0.707 (0.126%), neg=0, invalid=96777
0145: dt=92.480000, rms=0.706 (0.139%), neg=0, invalid=96777
0146: dt=92.480000, rms=0.705 (0.147%), neg=0, invalid=96777
0147: dt=92.480000, rms=0.704 (0.166%), neg=0, invalid=96777
0148: dt=92.480000, rms=0.702 (0.165%), neg=0, invalid=96777
0149: dt=92.480000, rms=0.701 (0.152%), neg=0, invalid=96777
0150: dt=92.480000, rms=0.700 (0.141%), neg=0, invalid=96777
0151: dt=92.480000, rms=0.699 (0.134%), neg=0, invalid=96777
0152: dt=92.480000, rms=0.699 (0.137%), neg=0, invalid=96777
0153: dt=92.480000, rms=0.698 (0.142%), neg=0, invalid=96777
0154: dt=92.480000, rms=0.697 (0.131%), neg=0, invalid=96777
0155: dt=92.480000, rms=0.696 (0.128%), neg=0, invalid=96777
0156: dt=92.480000, rms=0.695 (0.125%), neg=0, invalid=96777
0157: dt=92.480000, rms=0.694 (0.121%), neg=0, invalid=96777
0158: dt=92.480000, rms=0.693 (0.116%), neg=0, invalid=96777
0159: dt=92.480000, rms=0.692 (0.115%), neg=0, invalid=96777
0160: dt=92.480000, rms=0.692 (0.108%), neg=0, invalid=96777
0161: dt=92.480000, rms=0.691 (0.103%), neg=0, invalid=96777
0162: dt=92.480000, rms=0.690 (0.103%), neg=0, invalid=96777
0163: dt=92.480000, rms=0.690 (0.098%), neg=0, invalid=96777
0164: dt=92.480000, rms=0.689 (0.096%), neg=0, invalid=96777
0165: dt=92.480000, rms=0.688 (0.095%), neg=0, invalid=96777
0166: dt=92.480000, rms=0.688 (0.092%), neg=0, invalid=96777
0167: dt=92.480000, rms=0.687 (0.085%), neg=0, invalid=96777
0168: dt=92.480000, rms=0.687 (0.075%), neg=0, invalid=96777
0169: dt=92.480000, rms=0.686 (0.069%), neg=0, invalid=96777
0170: dt=92.480000, rms=0.686 (0.067%), neg=0, invalid=96777
0171: dt=92.480000, rms=0.685 (0.065%), neg=0, invalid=96777
0172: dt=92.480000, rms=0.685 (0.066%), neg=0, invalid=96777
0173: dt=92.480000, rms=0.684 (0.050%), neg=0, invalid=96777
0174: dt=92.480000, rms=0.684 (0.055%), neg=0, invalid=96777
0175: dt=92.480000, rms=0.684 (0.069%), neg=0, invalid=96777
0176: dt=92.480000, rms=0.683 (0.030%), neg=0, invalid=96777
0177: dt=92.480000, rms=0.683 (0.052%), neg=0, invalid=96777
0178: dt=92.480000, rms=0.683 (0.056%), neg=0, invalid=96777
0179: dt=92.480000, rms=0.682 (0.068%), neg=0, invalid=96777
0180: dt=92.480000, rms=0.682 (0.061%), neg=0, invalid=96777
0181: dt=92.480000, rms=0.681 (0.028%), neg=0, invalid=96777
0182: dt=92.480000, rms=0.681 (-0.001%), neg=0, invalid=96777
0183: dt=0.003612, rms=0.681 (0.000%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.681, neg=0, invalid=96777
0184: dt=32.368000, rms=0.681 (0.004%), neg=0, invalid=96777
0185: dt=129.472000, rms=0.681 (0.053%), neg=0, invalid=96777
0186: dt=129.472000, rms=0.681 (0.023%), neg=0, invalid=96777
0187: dt=129.472000, rms=0.681 (0.049%), neg=0, invalid=96777
0188: dt=129.472000, rms=0.680 (0.023%), neg=0, invalid=96777
0189: dt=129.472000, rms=0.680 (0.033%), neg=0, invalid=96777
0190: dt=129.472000, rms=0.680 (0.024%), neg=0, invalid=96777
0191: dt=129.472000, rms=0.680 (0.081%), neg=0, invalid=96777
0192: dt=129.472000, rms=0.679 (0.068%), neg=0, invalid=96777
0193: dt=129.472000, rms=0.678 (0.103%), neg=0, invalid=96777
0194: dt=129.472000, rms=0.677 (0.144%), neg=0, invalid=96777
0195: dt=129.472000, rms=0.677 (0.100%), neg=0, invalid=96777
0196: dt=129.472000, rms=0.676 (0.095%), neg=0, invalid=96777
0197: dt=129.472000, rms=0.676 (0.062%), neg=0, invalid=96777
0198: dt=129.472000, rms=0.675 (0.065%), neg=0, invalid=96777
0199: dt=129.472000, rms=0.675 (0.055%), neg=0, invalid=96777
0200: dt=129.472000, rms=0.674 (0.056%), neg=0, invalid=96777
0201: dt=129.472000, rms=0.674 (0.062%), neg=0, invalid=96777
0202: dt=129.472000, rms=0.674 (0.072%), neg=0, invalid=96777
0203: dt=129.472000, rms=0.673 (0.049%), neg=0, invalid=96777
0204: dt=129.472000, rms=0.673 (0.061%), neg=0, invalid=96777
0205: dt=129.472000, rms=0.672 (0.069%), neg=0, invalid=96777
0206: dt=129.472000, rms=0.672 (0.053%), neg=0, invalid=96777
0207: dt=129.472000, rms=0.672 (0.045%), neg=0, invalid=96777
0208: dt=129.472000, rms=0.671 (0.040%), neg=0, invalid=96777
0209: dt=129.472000, rms=0.671 (0.024%), neg=0, invalid=96777
0210: dt=129.472000, rms=0.671 (0.058%), neg=0, invalid=96777
0211: dt=129.472000, rms=0.671 (0.051%), neg=0, invalid=96777
0212: dt=129.472000, rms=0.670 (0.054%), neg=0, invalid=96777
0213: dt=129.472000, rms=0.670 (0.067%), neg=0, invalid=96777
0214: dt=129.472000, rms=0.669 (0.048%), neg=0, invalid=96777
0215: dt=129.472000, rms=0.669 (0.056%), neg=0, invalid=96777
0216: dt=129.472000, rms=0.669 (0.045%), neg=0, invalid=96777
0217: dt=129.472000, rms=0.668 (0.052%), neg=0, invalid=96777
0218: dt=129.472000, rms=0.668 (0.051%), neg=0, invalid=96777
0219: dt=129.472000, rms=0.668 (0.014%), neg=0, invalid=96777
0220: dt=129.472000, rms=0.668 (0.055%), neg=0, invalid=96777
0221: dt=129.472000, rms=0.667 (0.075%), neg=0, invalid=96777
0222: dt=129.472000, rms=0.667 (0.032%), neg=0, invalid=96777
0223: dt=129.472000, rms=0.667 (-0.013%), neg=0, invalid=96777
0224: dt=0.000000, rms=0.667 (0.000%), neg=0, invalid=96777
setting smoothness coefficient to 0.031
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.669, neg=0, invalid=96777
0225: dt=103.680000, rms=0.663 (0.910%), neg=0, invalid=96777
0226: dt=103.680000, rms=0.660 (0.444%), neg=0, invalid=96777
0227: dt=82.944000, rms=0.656 (0.564%), neg=0, invalid=96777
0228: dt=36.288000, rms=0.655 (0.131%), neg=0, invalid=96777
0229: dt=145.152000, rms=0.652 (0.436%), neg=0, invalid=96777
0230: dt=15.552000, rms=0.652 (0.111%), neg=0, invalid=96777
0231: dt=36.288000, rms=0.651 (0.094%), neg=0, invalid=96777
0232: dt=145.152000, rms=0.648 (0.523%), neg=0, invalid=96777
0233: dt=15.552000, rms=0.647 (0.081%), neg=0, invalid=96777
0234: dt=31.104000, rms=0.647 (0.049%), neg=0, invalid=96777
0235: dt=31.104000, rms=0.646 (0.095%), neg=0, invalid=96777
0236: dt=31.104000, rms=0.645 (0.153%), neg=0, invalid=96777
0237: dt=31.104000, rms=0.644 (0.202%), neg=0, invalid=96777
0238: dt=31.104000, rms=0.643 (0.198%), neg=0, invalid=96777
0239: dt=31.104000, rms=0.641 (0.279%), neg=0, invalid=96777
0240: dt=31.104000, rms=0.639 (0.351%), neg=0, invalid=96777
0241: dt=31.104000, rms=0.636 (0.336%), neg=0, invalid=96777
0242: dt=31.104000, rms=0.634 (0.315%), neg=0, invalid=96777
0243: dt=31.104000, rms=0.632 (0.309%), neg=0, invalid=96777
0244: dt=31.104000, rms=0.630 (0.323%), neg=0, invalid=96777
0245: dt=31.104000, rms=0.628 (0.320%), neg=0, invalid=96777
0246: dt=31.104000, rms=0.627 (0.258%), neg=0, invalid=96777
0247: dt=31.104000, rms=0.625 (0.225%), neg=0, invalid=96777
0248: dt=31.104000, rms=0.624 (0.207%), neg=0, invalid=96777
0249: dt=31.104000, rms=0.623 (0.215%), neg=0, invalid=96777
0250: dt=31.104000, rms=0.621 (0.253%), neg=0, invalid=96777
0251: dt=31.104000, rms=0.620 (0.239%), neg=0, invalid=96777
0252: dt=31.104000, rms=0.618 (0.205%), neg=0, invalid=96777
0253: dt=31.104000, rms=0.617 (0.192%), neg=0, invalid=96777
0254: dt=31.104000, rms=0.616 (0.194%), neg=0, invalid=96777
0255: dt=31.104000, rms=0.615 (0.209%), neg=0, invalid=96777
0256: dt=31.104000, rms=0.613 (0.202%), neg=0, invalid=96777
0257: dt=31.104000, rms=0.613 (0.154%), neg=0, invalid=96777
0258: dt=31.104000, rms=0.612 (0.114%), neg=0, invalid=96777
0259: dt=31.104000, rms=0.611 (0.126%), neg=0, invalid=96777
0260: dt=31.104000, rms=0.610 (0.134%), neg=0, invalid=96777
0261: dt=31.104000, rms=0.610 (0.109%), neg=0, invalid=96777
0262: dt=31.104000, rms=0.609 (0.091%), neg=0, invalid=96777
0263: dt=31.104000, rms=0.608 (0.121%), neg=0, invalid=96777
0264: dt=31.104000, rms=0.607 (0.133%), neg=0, invalid=96777
0265: dt=31.104000, rms=0.607 (0.115%), neg=0, invalid=96777
0266: dt=31.104000, rms=0.607 (0.005%), neg=0, invalid=96777
0267: dt=31.104000, rms=0.607 (0.019%), neg=0, invalid=96777
0268: dt=31.104000, rms=0.606 (0.030%), neg=0, invalid=96777
0269: dt=31.104000, rms=0.606 (0.043%), neg=0, invalid=96777
0270: dt=31.104000, rms=0.606 (0.043%), neg=0, invalid=96777
0271: dt=31.104000, rms=0.606 (0.046%), neg=0, invalid=96777
0272: dt=31.104000, rms=0.605 (0.037%), neg=0, invalid=96777
0273: dt=31.104000, rms=0.605 (0.050%), neg=0, invalid=96777
0274: dt=31.104000, rms=0.605 (0.048%), neg=0, invalid=96777
0275: dt=31.104000, rms=0.605 (0.038%), neg=0, invalid=96777
0276: dt=31.104000, rms=0.604 (0.044%), neg=0, invalid=96777
0277: dt=31.104000, rms=0.604 (0.025%), neg=0, invalid=96777
0278: dt=31.104000, rms=0.604 (0.008%), neg=0, invalid=96777
0279: dt=31.104000, rms=0.604 (0.001%), neg=0, invalid=96777
0280: dt=36.288000, rms=0.604 (0.017%), neg=0, invalid=96777
0281: dt=15.552000, rms=0.604 (0.002%), neg=0, invalid=96777
0282: dt=15.552000, rms=0.604 (0.001%), neg=0, invalid=96777
0283: dt=15.552000, rms=0.604 (-0.001%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.604, neg=0, invalid=96777
0284: dt=36.288000, rms=0.603 (0.096%), neg=0, invalid=96777
0285: dt=145.152000, rms=0.602 (0.236%), neg=0, invalid=96777
0286: dt=25.920000, rms=0.602 (0.033%), neg=0, invalid=96777
0287: dt=25.920000, rms=0.602 (0.038%), neg=0, invalid=96777
0288: dt=25.920000, rms=0.601 (0.082%), neg=0, invalid=96777
0289: dt=25.920000, rms=0.600 (0.107%), neg=0, invalid=96777
0290: dt=25.920000, rms=0.600 (0.095%), neg=0, invalid=96777
0291: dt=25.920000, rms=0.600 (0.047%), neg=0, invalid=96777
0292: dt=25.920000, rms=0.599 (0.065%), neg=0, invalid=96777
0293: dt=25.920000, rms=0.599 (0.076%), neg=0, invalid=96777
0294: dt=25.920000, rms=0.598 (0.083%), neg=0, invalid=96777
0295: dt=25.920000, rms=0.598 (0.079%), neg=0, invalid=96777
0296: dt=25.920000, rms=0.597 (0.081%), neg=0, invalid=96777
0297: dt=25.920000, rms=0.597 (0.112%), neg=0, invalid=96777
0298: dt=25.920000, rms=0.596 (0.120%), neg=0, invalid=96777
0299: dt=25.920000, rms=0.595 (0.114%), neg=0, invalid=96777
0300: dt=25.920000, rms=0.595 (0.081%), neg=0, invalid=96777
0301: dt=25.920000, rms=0.594 (0.053%), neg=0, invalid=96777
0302: dt=25.920000, rms=0.594 (0.068%), neg=0, invalid=96777
0303: dt=25.920000, rms=0.594 (0.069%), neg=0, invalid=96777
0304: dt=25.920000, rms=0.593 (0.083%), neg=0, invalid=96777
0305: dt=25.920000, rms=0.593 (0.088%), neg=0, invalid=96777
0306: dt=25.920000, rms=0.592 (0.070%), neg=0, invalid=96777
0307: dt=25.920000, rms=0.592 (0.059%), neg=0, invalid=96777
0308: dt=25.920000, rms=0.591 (0.055%), neg=0, invalid=96777
0309: dt=25.920000, rms=0.591 (0.068%), neg=0, invalid=96777
0310: dt=25.920000, rms=0.591 (0.080%), neg=0, invalid=96777
0311: dt=25.920000, rms=0.590 (0.085%), neg=0, invalid=96777
0312: dt=25.920000, rms=0.590 (0.068%), neg=0, invalid=96777
0313: dt=25.920000, rms=0.589 (0.044%), neg=0, invalid=96777
0314: dt=25.920000, rms=0.589 (0.034%), neg=0, invalid=96777
0315: dt=25.920000, rms=0.589 (0.064%), neg=0, invalid=96777
0316: dt=25.920000, rms=0.588 (0.082%), neg=0, invalid=96777
0317: dt=25.920000, rms=0.588 (0.071%), neg=0, invalid=96777
0318: dt=25.920000, rms=0.588 (0.080%), neg=0, invalid=96777
0319: dt=25.920000, rms=0.587 (0.081%), neg=0, invalid=96777
0320: dt=25.920000, rms=0.586 (0.095%), neg=0, invalid=96777
0321: dt=25.920000, rms=0.586 (0.094%), neg=0, invalid=96777
0322: dt=25.920000, rms=0.585 (0.079%), neg=0, invalid=96777
0323: dt=25.920000, rms=0.585 (0.050%), neg=0, invalid=96777
0324: dt=25.920000, rms=0.585 (0.014%), neg=0, invalid=96777
0325: dt=25.920000, rms=0.585 (-0.002%), neg=0, invalid=96777
0326: dt=36.288000, rms=0.585 (0.022%), neg=0, invalid=96777
0327: dt=5.184000, rms=0.585 (0.005%), neg=0, invalid=96777
setting smoothness coefficient to 0.118
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.595, neg=0, invalid=96777
0328: dt=32.000000, rms=0.591 (0.715%), neg=0, invalid=96777
0329: dt=11.200000, rms=0.590 (0.260%), neg=0, invalid=96777
0330: dt=8.000000, rms=0.589 (0.128%), neg=0, invalid=96777
0331: dt=2.800000, rms=0.589 (0.034%), neg=0, invalid=96777
0332: dt=0.700000, rms=0.589 (0.009%), neg=0, invalid=96777
0333: dt=0.043750, rms=0.589 (0.001%), neg=0, invalid=96777
0334: dt=0.010937, rms=0.589 (0.000%), neg=0, invalid=96777
0335: dt=0.001953, rms=0.589 (0.000%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.589, neg=0, invalid=96777
0336: dt=19.200000, rms=0.587 (0.268%), neg=0, invalid=96777
0337: dt=44.800000, rms=0.584 (0.558%), neg=0, invalid=96777
0338: dt=11.200000, rms=0.583 (0.105%), neg=0, invalid=96777
0339: dt=11.200000, rms=0.582 (0.163%), neg=0, invalid=96777
0340: dt=38.400000, rms=0.581 (0.275%), neg=0, invalid=96777
0341: dt=8.759124, rms=0.579 (0.228%), neg=0, invalid=96777
0342: dt=11.200000, rms=0.578 (0.143%), neg=0, invalid=96777
0343: dt=11.200000, rms=0.578 (0.129%), neg=0, invalid=96777
0344: dt=19.200000, rms=0.577 (0.133%), neg=0, invalid=96777
0345: dt=11.200000, rms=0.576 (0.130%), neg=0, invalid=96777
0346: dt=9.600000, rms=0.576 (0.091%), neg=0, invalid=96777
0347: dt=11.200000, rms=0.575 (0.128%), neg=0, invalid=96777
0348: dt=25.600000, rms=0.574 (0.130%), neg=0, invalid=96777
0349: dt=8.494845, rms=0.573 (0.134%), neg=0, invalid=96777
0350: dt=11.200000, rms=0.573 (0.110%), neg=0, invalid=96777
0351: dt=11.200000, rms=0.572 (0.104%), neg=0, invalid=96777
0352: dt=19.200000, rms=0.572 (0.106%), neg=0, invalid=96777
0353: dt=11.200000, rms=0.571 (0.095%), neg=0, invalid=96777
0354: dt=6.400000, rms=0.571 (0.047%), neg=0, invalid=96777
0355: dt=6.400000, rms=0.570 (0.072%), neg=0, invalid=96777
0356: dt=6.400000, rms=0.570 (0.099%), neg=0, invalid=96777
0357: dt=6.400000, rms=0.569 (0.113%), neg=0, invalid=96777
0358: dt=6.400000, rms=0.568 (0.161%), neg=0, invalid=96777
0359: dt=6.400000, rms=0.567 (0.187%), neg=0, invalid=96777
0360: dt=6.400000, rms=0.566 (0.210%), neg=0, invalid=96777
0361: dt=6.400000, rms=0.565 (0.224%), neg=0, invalid=96777
0362: dt=6.400000, rms=0.563 (0.207%), neg=0, invalid=96777
0363: dt=6.400000, rms=0.562 (0.220%), neg=0, invalid=96777
0364: dt=6.400000, rms=0.561 (0.234%), neg=0, invalid=96777
0365: dt=6.400000, rms=0.560 (0.229%), neg=0, invalid=96777
0366: dt=6.400000, rms=0.558 (0.215%), neg=0, invalid=96777
0367: dt=6.400000, rms=0.557 (0.207%), neg=0, invalid=96777
0368: dt=6.400000, rms=0.556 (0.212%), neg=0, invalid=96777
0369: dt=6.400000, rms=0.555 (0.198%), neg=0, invalid=96777
0370: dt=6.400000, rms=0.554 (0.186%), neg=0, invalid=96777
0371: dt=6.400000, rms=0.553 (0.199%), neg=0, invalid=96777
0372: dt=6.400000, rms=0.552 (0.187%), neg=0, invalid=96777
0373: dt=6.400000, rms=0.551 (0.176%), neg=0, invalid=96777
0374: dt=6.400000, rms=0.550 (0.165%), neg=0, invalid=96777
0375: dt=6.400000, rms=0.549 (0.156%), neg=0, invalid=96777
0376: dt=6.400000, rms=0.548 (0.155%), neg=0, invalid=96777
0377: dt=6.400000, rms=0.547 (0.145%), neg=0, invalid=96777
0378: dt=6.400000, rms=0.547 (0.134%), neg=0, invalid=96777
0379: dt=6.400000, rms=0.546 (0.118%), neg=0, invalid=96777
0380: dt=6.400000, rms=0.545 (0.110%), neg=0, invalid=96777
0381: dt=6.400000, rms=0.545 (0.102%), neg=0, invalid=96777
0382: dt=6.400000, rms=0.544 (0.076%), neg=0, invalid=96777
0383: dt=6.400000, rms=0.544 (0.056%), neg=0, invalid=96777
0384: dt=6.400000, rms=0.544 (0.062%), neg=0, invalid=96777
0385: dt=6.400000, rms=0.543 (0.070%), neg=0, invalid=96777
0386: dt=6.400000, rms=0.543 (0.078%), neg=0, invalid=96777
0387: dt=6.400000, rms=0.543 (0.082%), neg=0, invalid=96777
0388: dt=6.400000, rms=0.542 (0.085%), neg=0, invalid=96777
0389: dt=6.400000, rms=0.542 (0.079%), neg=0, invalid=96777
0390: dt=6.400000, rms=0.541 (0.076%), neg=0, invalid=96777
0391: dt=6.400000, rms=0.541 (0.063%), neg=0, invalid=96777
0392: dt=6.400000, rms=0.541 (0.061%), neg=0, invalid=96777
0393: dt=6.400000, rms=0.540 (0.057%), neg=0, invalid=96777
0394: dt=6.400000, rms=0.540 (0.059%), neg=0, invalid=96777
0395: dt=6.400000, rms=0.540 (0.064%), neg=0, invalid=96777
0396: dt=6.400000, rms=0.539 (0.059%), neg=0, invalid=96777
0397: dt=6.400000, rms=0.539 (0.031%), neg=0, invalid=96777
0398: dt=6.400000, rms=0.539 (0.040%), neg=0, invalid=96777
0399: dt=6.400000, rms=0.539 (0.045%), neg=0, invalid=96777
0400: dt=6.400000, rms=0.538 (0.058%), neg=0, invalid=96777
0401: dt=6.400000, rms=0.538 (0.068%), neg=0, invalid=96777
0402: dt=6.400000, rms=0.538 (0.064%), neg=0, invalid=96777
0403: dt=6.400000, rms=0.537 (0.064%), neg=0, invalid=96777
0404: dt=6.400000, rms=0.537 (0.051%), neg=0, invalid=96777
0405: dt=6.400000, rms=0.537 (0.046%), neg=0, invalid=96777
0406: dt=6.400000, rms=0.537 (0.042%), neg=0, invalid=96777
0407: dt=6.400000, rms=0.536 (0.039%), neg=0, invalid=96777
0408: dt=6.400000, rms=0.536 (0.037%), neg=0, invalid=96777
0409: dt=6.400000, rms=0.536 (0.037%), neg=0, invalid=96777
0410: dt=6.400000, rms=0.536 (0.030%), neg=0, invalid=96777
0411: dt=6.400000, rms=0.536 (0.035%), neg=0, invalid=96777
0412: dt=6.400000, rms=0.536 (0.029%), neg=0, invalid=96777
0413: dt=6.400000, rms=0.535 (0.034%), neg=0, invalid=96777
0414: dt=6.400000, rms=0.535 (0.033%), neg=0, invalid=96777
0415: dt=6.400000, rms=0.535 (0.034%), neg=0, invalid=96777
0416: dt=6.400000, rms=0.535 (0.035%), neg=0, invalid=96777
0417: dt=6.400000, rms=0.535 (0.038%), neg=0, invalid=96777
0418: dt=6.400000, rms=0.534 (0.030%), neg=0, invalid=96777
0419: dt=6.400000, rms=0.534 (0.034%), neg=0, invalid=96777
0420: dt=6.400000, rms=0.534 (0.029%), neg=0, invalid=96777
0421: dt=6.400000, rms=0.534 (0.034%), neg=0, invalid=96777
0422: dt=6.400000, rms=0.534 (0.025%), neg=0, invalid=96777
0423: dt=6.400000, rms=0.534 (0.029%), neg=0, invalid=96777
0424: dt=6.400000, rms=0.533 (0.028%), neg=0, invalid=96777
0425: dt=6.400000, rms=0.533 (0.022%), neg=0, invalid=96777
0426: dt=6.400000, rms=0.533 (0.026%), neg=0, invalid=96777
0427: dt=6.400000, rms=0.533 (0.023%), neg=0, invalid=96777
0428: dt=6.400000, rms=0.533 (0.031%), neg=0, invalid=96777
0429: dt=6.400000, rms=0.533 (0.026%), neg=0, invalid=96777
0430: dt=6.400000, rms=0.533 (0.022%), neg=0, invalid=96777
0431: dt=6.400000, rms=0.533 (0.019%), neg=0, invalid=96777
0432: dt=25.600000, rms=0.532 (0.020%), neg=0, invalid=96777
0433: dt=2.800000, rms=0.532 (0.002%), neg=0, invalid=96777
0434: dt=2.800000, rms=0.532 (0.006%), neg=0, invalid=96777
0435: dt=2.800000, rms=0.532 (0.003%), neg=0, invalid=96777
0436: dt=2.800000, rms=0.532 (-0.002%), neg=0, invalid=96777
setting smoothness coefficient to 0.400
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.555, neg=0, invalid=96777
0437: dt=0.000000, rms=0.555 (0.000%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.555, neg=0, invalid=96777
0438: dt=0.000000, rms=0.555 (0.000%), neg=0, invalid=96777
setting smoothness coefficient to 1.000
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.599, neg=0, invalid=96777
0439: dt=0.953846, rms=0.597 (0.447%), neg=0, invalid=96777
0440: dt=0.384000, rms=0.597 (0.031%), neg=0, invalid=96777
0441: dt=0.384000, rms=0.597 (-0.018%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.597, neg=0, invalid=96777
0442: dt=0.516667, rms=0.596 (0.081%), neg=0, invalid=96777
0443: dt=0.320000, rms=0.596 (0.018%), neg=0, invalid=96777
0444: dt=0.320000, rms=0.596 (-0.005%), neg=0, invalid=96777
resetting metric properties...
setting smoothness coefficient to 2.000
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.541, neg=0, invalid=96777
0445: dt=0.112000, rms=0.534 (1.267%), neg=0, invalid=96777
0446: dt=0.007000, rms=0.534 (0.060%), neg=0, invalid=96777
0447: dt=0.080000, rms=0.531 (0.680%), neg=0, invalid=96777
0448: dt=0.007000, rms=0.530 (0.050%), neg=0, invalid=96777
0449: dt=0.007000, rms=0.530 (0.049%), neg=0, invalid=96777
0450: dt=0.007000, rms=0.530 (0.091%), neg=0, invalid=96777
0451: dt=0.007000, rms=0.529 (0.130%), neg=0, invalid=96777
0452: dt=0.007000, rms=0.528 (0.162%), neg=0, invalid=96777
0453: dt=0.007000, rms=0.527 (0.187%), neg=0, invalid=96777
0454: dt=0.007000, rms=0.526 (0.210%), neg=0, invalid=96777
0455: dt=0.007000, rms=0.525 (0.224%), neg=0, invalid=96777
0456: dt=0.007000, rms=0.523 (0.237%), neg=0, invalid=96777
0457: dt=0.007000, rms=0.522 (0.243%), neg=0, invalid=96777
0458: dt=0.007000, rms=0.521 (0.246%), neg=0, invalid=96777
0459: dt=0.007000, rms=0.520 (0.245%), neg=0, invalid=96777
0460: dt=0.007000, rms=0.518 (0.240%), neg=0, invalid=96777
0461: dt=0.007000, rms=0.517 (0.229%), neg=0, invalid=96777
0462: dt=0.007000, rms=0.516 (0.228%), neg=0, invalid=96777
0463: dt=0.007000, rms=0.515 (0.212%), neg=0, invalid=96777
0464: dt=0.007000, rms=0.514 (0.199%), neg=0, invalid=96777
0465: dt=0.007000, rms=0.513 (0.185%), neg=0, invalid=96777
0466: dt=0.007000, rms=0.512 (0.168%), neg=0, invalid=96777
0467: dt=0.007000, rms=0.511 (0.159%), neg=0, invalid=96777
0468: dt=0.007000, rms=0.511 (0.141%), neg=0, invalid=96777
0469: dt=0.007000, rms=0.510 (0.124%), neg=0, invalid=96777
0470: dt=0.007000, rms=0.509 (0.105%), neg=0, invalid=96777
0471: dt=0.007000, rms=0.509 (0.094%), neg=0, invalid=96777
0472: dt=0.007000, rms=0.508 (0.084%), neg=0, invalid=96777
0473: dt=0.007000, rms=0.508 (0.068%), neg=0, invalid=96777
0474: dt=0.007000, rms=0.508 (0.052%), neg=0, invalid=96777
0475: dt=0.007000, rms=0.508 (0.044%), neg=0, invalid=96777
0476: dt=0.007000, rms=0.507 (0.033%), neg=0, invalid=96777
0477: dt=0.007000, rms=0.507 (0.025%), neg=0, invalid=96777
0478: dt=0.007000, rms=0.507 (0.017%), neg=0, invalid=96777
0479: dt=0.000000, rms=0.507 (-0.001%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.507, neg=0, invalid=96777
0480: dt=0.115639, rms=0.505 (0.356%), neg=0, invalid=96777
0481: dt=0.112000, rms=0.504 (0.257%), neg=0, invalid=96777
0482: dt=0.024000, rms=0.504 (0.046%), neg=0, invalid=96777
0483: dt=0.024000, rms=0.504 (0.042%), neg=0, invalid=96777
0484: dt=0.024000, rms=0.503 (0.076%), neg=0, invalid=96777
0485: dt=0.024000, rms=0.503 (0.105%), neg=0, invalid=96777
0486: dt=0.012000, rms=0.503 (0.013%), neg=0, invalid=96777
0487: dt=0.012000, rms=0.503 (0.030%), neg=0, invalid=96777
0488: dt=0.012000, rms=0.502 (0.040%), neg=0, invalid=96777
0489: dt=0.012000, rms=0.502 (0.049%), neg=0, invalid=96777
0490: dt=0.012000, rms=0.502 (0.057%), neg=0, invalid=96777
0491: dt=0.012000, rms=0.502 (0.059%), neg=0, invalid=96777
0492: dt=0.012000, rms=0.501 (0.069%), neg=0, invalid=96777
0493: dt=0.012000, rms=0.501 (0.067%), neg=0, invalid=96777
0494: dt=0.012000, rms=0.501 (0.067%), neg=0, invalid=96777
0495: dt=0.012000, rms=0.500 (0.066%), neg=0, invalid=96777
0496: dt=0.012000, rms=0.500 (0.062%), neg=0, invalid=96777
0497: dt=0.012000, rms=0.500 (0.058%), neg=0, invalid=96777
0498: dt=0.012000, rms=0.499 (0.053%), neg=0, invalid=96777
0499: dt=0.012000, rms=0.499 (0.049%), neg=0, invalid=96777
0500: dt=0.012000, rms=0.499 (0.046%), neg=0, invalid=96777
0501: dt=0.012000, rms=0.499 (-0.001%), neg=0, invalid=96777
0502: dt=0.000000, rms=0.499 (0.000%), neg=0, invalid=96777
label assignment complete, 0 changed (0.00%)
*********************************************************************************************
*********************************************************************************************
*********************************************************************************************
********************* ALLOWING NEGATIVE NODES IN DEFORMATION ********************************
*********************************************************************************************
*********************************************************************************************
*********************************************************************************************
**************** pass 1 of 1 ************************
setting smoothness coefficient to 0.008
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.497, neg=0, invalid=96777
0503: dt=8.092000, rms=0.497 (0.001%), neg=0, invalid=96777
0504: dt=0.018063, rms=0.497 (-0.001%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.497, neg=0, invalid=96777
0505: dt=0.004516, rms=0.497 (0.000%), neg=0, invalid=96777
0506: dt=0.004516, rms=0.497 (0.000%), neg=0, invalid=96777
0507: dt=0.004516, rms=0.497 (-0.000%), neg=0, invalid=96777
setting smoothness coefficient to 0.031
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.497, neg=0, invalid=96777
0508: dt=31.104000, rms=0.496 (0.166%), neg=0, invalid=96777
0509: dt=25.920000, rms=0.496 (0.033%), neg=0, invalid=96777
0510: dt=25.920000, rms=0.496 (0.041%), neg=0, invalid=96777
0511: dt=25.920000, rms=0.496 (-0.058%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.496, neg=0, invalid=96777
0512: dt=31.104000, rms=0.495 (0.242%), neg=0, invalid=96777
0513: dt=36.288000, rms=0.493 (0.249%), neg=0, invalid=96777
0514: dt=25.920000, rms=0.493 (0.069%), neg=0, invalid=96777
0515: dt=25.920000, rms=0.493 (0.104%), neg=0, invalid=96777
0516: dt=25.920000, rms=0.492 (0.097%), neg=0, invalid=96777
0517: dt=25.920000, rms=0.492 (0.105%), neg=0, invalid=96777
0518: dt=25.920000, rms=0.491 (0.121%), neg=0, invalid=96777
0519: dt=25.920000, rms=0.490 (0.118%), neg=0, invalid=96777
setting smoothness coefficient to 0.118
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.491, neg=0, invalid=96777
iter 0, gcam->neg = 1
after 0 iterations, nbhd size=0, neg = 0
0520: dt=11.200000, rms=0.489 (0.424%), neg=0, invalid=96777
0521: dt=11.200000, rms=0.487 (0.246%), neg=0, invalid=96777
iter 0, gcam->neg = 2
after 6 iterations, nbhd size=1, neg = 0
0522: dt=11.200000, rms=0.486 (0.178%), neg=0, invalid=96777
iter 0, gcam->neg = 6
after 16 iterations, nbhd size=2, neg = 0
0523: dt=11.200000, rms=0.486 (0.093%), neg=0, invalid=96777
iter 0, gcam->neg = 11
after 9 iterations, nbhd size=1, neg = 0
0524: dt=11.200000, rms=0.486 (-0.020%), neg=0, invalid=96777
iter 0, gcam->neg = 5
after 6 iterations, nbhd size=1, neg = 0
0525: dt=25.600000, rms=0.485 (0.158%), neg=0, invalid=96777
0526: dt=8.000000, rms=0.485 (0.039%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.485, neg=0, invalid=96777
iter 0, gcam->neg = 2
after 7 iterations, nbhd size=1, neg = 0
0527: dt=25.600000, rms=0.481 (0.904%), neg=0, invalid=96777
iter 0, gcam->neg = 3
after 1 iterations, nbhd size=0, neg = 0
0528: dt=9.861635, rms=0.479 (0.348%), neg=0, invalid=96777
0529: dt=9.600000, rms=0.478 (0.208%), neg=0, invalid=96777
0530: dt=9.600000, rms=0.477 (0.117%), neg=0, invalid=96777
0531: dt=9.600000, rms=0.476 (0.234%), neg=0, invalid=96777
iter 0, gcam->neg = 2
after 7 iterations, nbhd size=1, neg = 0
0532: dt=9.600000, rms=0.475 (0.181%), neg=0, invalid=96777
0533: dt=9.600000, rms=0.475 (0.141%), neg=0, invalid=96777
iter 0, gcam->neg = 1
after 0 iterations, nbhd size=0, neg = 0
0534: dt=9.600000, rms=0.473 (0.320%), neg=0, invalid=96777
iter 0, gcam->neg = 1
after 1 iterations, nbhd size=0, neg = 0
0535: dt=9.600000, rms=0.472 (0.251%), neg=0, invalid=96777
0536: dt=9.600000, rms=0.471 (0.228%), neg=0, invalid=96777
iter 0, gcam->neg = 1
after 6 iterations, nbhd size=1, neg = 0
0537: dt=9.600000, rms=0.470 (0.164%), neg=0, invalid=96777
0538: dt=9.600000, rms=0.469 (0.237%), neg=0, invalid=96777
0539: dt=9.600000, rms=0.468 (0.212%), neg=0, invalid=96777
0540: dt=9.600000, rms=0.467 (0.190%), neg=0, invalid=96777
0541: dt=9.600000, rms=0.467 (0.154%), neg=0, invalid=96777
0542: dt=9.600000, rms=0.466 (0.190%), neg=0, invalid=96777
iter 0, gcam->neg = 3
after 7 iterations, nbhd size=1, neg = 0
0543: dt=9.600000, rms=0.465 (0.109%), neg=0, invalid=96777
0544: dt=9.600000, rms=0.465 (0.120%), neg=0, invalid=96777
iter 0, gcam->neg = 1
after 0 iterations, nbhd size=0, neg = 0
0545: dt=9.600000, rms=0.464 (0.119%), neg=0, invalid=96777
0546: dt=6.400000, rms=0.464 (0.047%), neg=0, invalid=96777
0547: dt=6.400000, rms=0.464 (0.037%), neg=0, invalid=96777
0548: dt=6.400000, rms=0.464 (0.018%), neg=0, invalid=96777
0549: dt=6.400000, rms=0.463 (0.023%), neg=0, invalid=96777
0550: dt=6.400000, rms=0.463 (0.022%), neg=0, invalid=96777
setting smoothness coefficient to 0.400
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.468, neg=0, invalid=96777
iter 0, gcam->neg = 1
after 5 iterations, nbhd size=1, neg = 0
0551: dt=3.700000, rms=0.468 (0.112%), neg=0, invalid=96777
0552: dt=1.008000, rms=0.468 (0.009%), neg=0, invalid=96777
0553: dt=1.008000, rms=0.468 (0.019%), neg=0, invalid=96777
iter 0, gcam->neg = 1
after 6 iterations, nbhd size=1, neg = 0
0554: dt=1.008000, rms=0.467 (0.010%), neg=0, invalid=96777
0555: dt=1.008000, rms=0.467 (-0.035%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.467, neg=0, invalid=96777
0556: dt=1.008000, rms=0.467 (0.023%), neg=0, invalid=96777
0557: dt=4.173913, rms=0.467 (0.091%), neg=0, invalid=96777
0558: dt=0.252000, rms=0.467 (0.005%), neg=0, invalid=96777
0559: dt=0.252000, rms=0.467 (0.005%), neg=0, invalid=96777
0560: dt=0.252000, rms=0.467 (0.007%), neg=0, invalid=96777
0561: dt=0.252000, rms=0.467 (0.011%), neg=0, invalid=96777
0562: dt=0.252000, rms=0.467 (0.012%), neg=0, invalid=96777
0563: dt=0.252000, rms=0.467 (0.013%), neg=0, invalid=96777
0564: dt=0.252000, rms=0.467 (0.015%), neg=0, invalid=96777
0565: dt=0.252000, rms=0.467 (0.011%), neg=0, invalid=96777
0566: dt=0.252000, rms=0.466 (0.015%), neg=0, invalid=96777
0567: dt=0.252000, rms=0.466 (0.015%), neg=0, invalid=96777
setting smoothness coefficient to 1.000
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.473, neg=0, invalid=96777
0568: dt=0.000000, rms=0.473 (-0.001%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.473, neg=0, invalid=96777
0569: dt=0.096000, rms=0.473 (0.000%), neg=0, invalid=96777
0570: dt=0.192000, rms=0.473 (0.004%), neg=0, invalid=96777
0571: dt=0.192000, rms=0.473 (0.004%), neg=0, invalid=96777
0572: dt=0.112000, rms=0.473 (0.001%), neg=0, invalid=96777
0573: dt=0.112000, rms=0.473 (0.001%), neg=0, invalid=96777
0574: dt=0.112000, rms=0.473 (-0.001%), neg=0, invalid=96777
resetting metric properties...
setting smoothness coefficient to 2.000
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.463, neg=0, invalid=96777
iter 0, gcam->neg = 730
after 22 iterations, nbhd size=2, neg = 0
0575: dt=1.395201, rms=0.428 (7.563%), neg=0, invalid=96777
0576: dt=0.000188, rms=0.428 (0.007%), neg=0, invalid=96777
0577: dt=0.000188, rms=0.428 (0.000%), neg=0, invalid=96777
0578: dt=0.000188, rms=0.428 (-0.001%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.428, neg=0, invalid=96777
0579: dt=0.000750, rms=0.428 (0.001%), neg=0, invalid=96777
0580: dt=0.000023, rms=0.428 (0.000%), neg=0, invalid=96777
0581: dt=0.000023, rms=0.428 (-0.000%), neg=0, invalid=96777
label assignment complete, 0 changed (0.00%)
label assignment complete, 0 changed (0.00%)
***************** morphing with label term set to 0 *******************************
**************** pass 1 of 1 ************************
setting smoothness coefficient to 0.008
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.420, neg=0, invalid=96777
0582: dt=0.000000, rms=0.420 (-0.197%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.420, neg=0, invalid=96777
0583: dt=0.000000, rms=0.420 (0.000%), neg=0, invalid=96777
setting smoothness coefficient to 0.031
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.421, neg=0, invalid=96777
0584: dt=0.000000, rms=0.421 (0.000%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.421, neg=0, invalid=96777
0585: dt=9.072000, rms=0.421 (0.004%), neg=0, invalid=96777
0586: dt=3.888000, rms=0.421 (0.001%), neg=0, invalid=96777
0587: dt=3.888000, rms=0.421 (-0.000%), neg=0, invalid=96777
setting smoothness coefficient to 0.118
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.421, neg=0, invalid=96777
0588: dt=2.800000, rms=0.421 (0.022%), neg=0, invalid=96777
0589: dt=2.400000, rms=0.421 (0.006%), neg=0, invalid=96777
0590: dt=2.400000, rms=0.421 (-0.002%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.421, neg=0, invalid=96777
iter 0, gcam->neg = 8
after 9 iterations, nbhd size=1, neg = 0
0591: dt=25.600000, rms=0.420 (0.250%), neg=0, invalid=96777
iter 0, gcam->neg = 18
after 10 iterations, nbhd size=1, neg = 0
0592: dt=9.600000, rms=0.419 (0.089%), neg=0, invalid=96777
iter 0, gcam->neg = 5
after 9 iterations, nbhd size=1, neg = 0
0593: dt=9.600000, rms=0.419 (0.066%), neg=0, invalid=96777
iter 0, gcam->neg = 10
after 9 iterations, nbhd size=1, neg = 0
0594: dt=9.600000, rms=0.419 (0.072%), neg=0, invalid=96777
iter 0, gcam->neg = 13
after 15 iterations, nbhd size=2, neg = 0
0595: dt=9.600000, rms=0.419 (-0.140%), neg=0, invalid=96777
setting smoothness coefficient to 0.400
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.420, neg=0, invalid=96777
0596: dt=0.541667, rms=0.420 (0.025%), neg=0, invalid=96777
iter 0, gcam->neg = 26
after 19 iterations, nbhd size=2, neg = 0
0597: dt=2.698795, rms=0.419 (0.155%), neg=0, invalid=96777
iter 0, gcam->neg = 12
after 18 iterations, nbhd size=2, neg = 0
0598: dt=1.008000, rms=0.419 (0.062%), neg=0, invalid=96777
iter 0, gcam->neg = 3
after 5 iterations, nbhd size=1, neg = 0
0599: dt=1.008000, rms=0.419 (0.038%), neg=0, invalid=96777
iter 0, gcam->neg = 13
after 20 iterations, nbhd size=2, neg = 0
0600: dt=1.008000, rms=0.419 (0.035%), neg=0, invalid=96777
iter 0, gcam->neg = 32
after 22 iterations, nbhd size=2, neg = 0
0601: dt=1.008000, rms=0.419 (-0.047%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.419, neg=0, invalid=96777
iter 0, gcam->neg = 10
after 11 iterations, nbhd size=1, neg = 0
0602: dt=1.008000, rms=0.419 (0.043%), neg=0, invalid=96777
iter 0, gcam->neg = 55
after 33 iterations, nbhd size=3, neg = 0
0603: dt=2.589147, rms=0.418 (0.231%), neg=0, invalid=96777
iter 0, gcam->neg = 28
after 12 iterations, nbhd size=1, neg = 0
0604: dt=2.106383, rms=0.417 (0.123%), neg=0, invalid=96777
iter 0, gcam->neg = 19
after 9 iterations, nbhd size=1, neg = 0
0605: dt=2.106383, rms=0.417 (0.071%), neg=0, invalid=96777
iter 0, gcam->neg = 74
after 21 iterations, nbhd size=1, neg = 0
0606: dt=2.106383, rms=0.417 (-0.033%), neg=0, invalid=96777
setting smoothness coefficient to 1.000
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.420, neg=0, invalid=96777
0607: dt=0.000000, rms=0.420 (0.000%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.420, neg=0, invalid=96777
0608: dt=0.001750, rms=0.420 (0.000%), neg=0, invalid=96777
0609: dt=0.005000, rms=0.420 (0.000%), neg=0, invalid=96777
0610: dt=0.005000, rms=0.420 (0.001%), neg=0, invalid=96777
0611: dt=0.005000, rms=0.420 (0.001%), neg=0, invalid=96777
0612: dt=0.005000, rms=0.420 (0.002%), neg=0, invalid=96777
0613: dt=0.005000, rms=0.420 (0.002%), neg=0, invalid=96777
0614: dt=0.005000, rms=0.420 (0.002%), neg=0, invalid=96777
iter 0, gcam->neg = 1
after 0 iterations, nbhd size=0, neg = 0
0615: dt=0.005000, rms=0.420 (0.003%), neg=0, invalid=96777
0616: dt=0.005000, rms=0.420 (0.003%), neg=0, invalid=96777
0617: dt=0.005000, rms=0.420 (0.003%), neg=0, invalid=96777
0618: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777
0619: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777
0620: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777
0621: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777
0622: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777
0623: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777
resetting metric properties...
setting smoothness coefficient to 2.000
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.415, neg=0, invalid=96777
iter 0, gcam->neg = 187
after 17 iterations, nbhd size=2, neg = 0
0624: dt=0.448000, rms=0.406 (2.005%), neg=0, invalid=96777
0625: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777
0626: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777
iter 0, gcam->neg = 1
after 0 iterations, nbhd size=0, neg = 0
0627: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777
0628: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777
0629: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777
0630: dt=0.001750, rms=0.406 (0.002%), neg=0, invalid=96777
0631: dt=0.001750, rms=0.406 (0.003%), neg=0, invalid=96777
0632: dt=0.001750, rms=0.406 (0.004%), neg=0, invalid=96777
iter 0, gcam->neg = 1
after 5 iterations, nbhd size=1, neg = 0
0633: dt=0.001750, rms=0.406 (0.003%), neg=0, invalid=96777
0634: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777
0635: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777
0636: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777
0637: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777
0638: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777
0639: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777
0640: dt=0.001750, rms=0.406 (0.006%), neg=0, invalid=96777
0641: dt=0.001750, rms=0.406 (0.006%), neg=0, invalid=96777
0642: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777
iter 0, gcam->neg = 6
after 9 iterations, nbhd size=1, neg = 0
0643: dt=0.064000, rms=0.406 (0.005%), neg=0, invalid=96777
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.406, neg=0, invalid=96777
iter 0, gcam->neg = 42
after 7 iterations, nbhd size=1, neg = 0
0644: dt=0.080000, rms=0.405 (0.207%), neg=0, invalid=96777
iter 0, gcam->neg = 13
after 6 iterations, nbhd size=1, neg = 0
0645: dt=0.028000, rms=0.405 (0.074%), neg=0, invalid=96777
iter 0, gcam->neg = 8
after 6 iterations, nbhd size=1, neg = 0
0646: dt=0.028000, rms=0.405 (0.078%), neg=0, invalid=96777
iter 0, gcam->neg = 15
after 7 iterations, nbhd size=1, neg = 0
0647: dt=0.028000, rms=0.404 (0.135%), neg=0, invalid=96777
iter 0, gcam->neg = 23
after 16 iterations, nbhd size=2, neg = 0
0648: dt=0.028000, rms=0.404 (0.149%), neg=0, invalid=96777
iter 0, gcam->neg = 36
after 15 iterations, nbhd size=2, neg = 0
0649: dt=0.028000, rms=0.403 (0.181%), neg=0, invalid=96777
iter 0, gcam->neg = 61
after 9 iterations, nbhd size=1, neg = 0
0650: dt=0.028000, rms=0.402 (0.200%), neg=0, invalid=96777
iter 0, gcam->neg = 70
after 9 iterations, nbhd size=1, neg = 0
0651: dt=0.028000, rms=0.401 (0.189%), neg=0, invalid=96777
iter 0, gcam->neg = 87
after 17 iterations, nbhd size=2, neg = 0
0652: dt=0.028000, rms=0.401 (0.152%), neg=0, invalid=96777
iter 0, gcam->neg = 91
after 11 iterations, nbhd size=1, neg = 0
0653: dt=0.028000, rms=0.400 (0.154%), neg=0, invalid=96777
iter 0, gcam->neg = 97
after 11 iterations, nbhd size=1, neg = 0
0654: dt=0.028000, rms=0.399 (0.131%), neg=0, invalid=96777
iter 0, gcam->neg = 104
after 20 iterations, nbhd size=2, neg = 0
0655: dt=0.028000, rms=0.399 (0.070%), neg=0, invalid=96777
iter 0, gcam->neg = 125
after 13 iterations, nbhd size=1, neg = 0
0656: dt=0.028000, rms=0.399 (0.034%), neg=0, invalid=96777
0657: dt=0.000000, rms=0.399 (0.000%), neg=0, invalid=96777
writing output transformation to transforms/talairach.m3z...
GCAMwrite
registration took 3 hours, 20 minutes and 41 seconds.
#--------------------------------------
#@# CA Reg Inv Tue Jul 26 19:25:45 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_ca_register -invert-and-save transforms/talairach.m3z

Loading, Inverting, Saving, Exiting ...
Reading transforms/talairach.m3z
Inverting GCAM
Saving inverse
#--------------------------------------
#@# Remove Neck Tue Jul 26 19:27:12 EDT 2016

 mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca nu_noneck.mgz

erasing everything more than 25 mm from possible brain
reading atlas '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'...
reading input volume 'nu.mgz'...
reading transform 'transforms/talairach.m3z'...
removing structures at least 25 mm from brain...
11544922 nonbrain voxels erased
writing output to nu_noneck.mgz...
nonbrain removal took 1 minutes and 37 seconds.
#--------------------------------------
#@# SkullLTA Tue Jul 26 19:28:49 EDT 2016

 mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull_2.lta

aligning to atlas containing skull, setting unknown_nbr_spacing = 5
using previously computed transform transforms/talairach.lta
reading 1 input volumes...
logging results to talairach_with_skull_2.log
reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'...
average std = 23.1   using min determinant for regularization = 53.4
0 singular and 5702 ill-conditioned covariance matrices regularized
reading 'nu_noneck.mgz'...
freeing gibbs priors...done.
bounding unknown intensity as < 20.2 or > 943.7
total sample mean = 92.0 (1443 zeros)
************************************************
spacing=8, using 3481 sample points, tol=1.00e-05...
************************************************
register_mri: find_optimal_transform
find_optimal_transform: nsamples 3481, passno 0, spacing 8
resetting wm mean[0]: 117 --> 126
resetting gm mean[0]: 74 --> 74
input volume #1 is the most T1-like
using real data threshold=13.0
skull bounding box = (50, 62, 24) --> (214, 200, 218)
using (105, 108, 121) as brain centroid...
mean wm in atlas = 126, using box (85,91,97) --> (125, 124,144) to find MRI wm
before smoothing, mri peak at 104
after smoothing, mri peak at 103, scaling input intensities by 1.223
scaling channel 0 by 1.2233
****************************************
Nine parameter search.  iteration 0 nscales = 0 ...
****************************************
Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.0 (thresh=-4.0)
 1.054  -0.049  -0.005  -8.206;
 0.045   1.178   0.173  -72.971;
-0.000  -0.117   1.048   3.671;
 0.000   0.000   0.000   1.000;
reducing scale to 0.2500
****************************************
Nine parameter search.  iteration 1 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.3 (thresh=-4.2)
 1.030  -0.079  -0.078   7.698;
 0.077   1.153   0.167  -73.025;
 0.071  -0.125   1.084  -9.031;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 2 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2)
 1.049  -0.081  -0.080   5.484;
 0.078   1.175   0.171  -76.665;
 0.071  -0.125   1.084  -9.031;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 3 nscales = 1 ...
****************************************
Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2)
 1.049  -0.081  -0.080   5.484;
 0.078   1.175   0.171  -76.665;
 0.071  -0.125   1.084  -9.031;
 0.000   0.000   0.000   1.000;
reducing scale to 0.0625
****************************************
Nine parameter search.  iteration 4 nscales = 2 ...
****************************************
Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2)
 1.048  -0.091  -0.072   5.809;
 0.085   1.174   0.152  -74.577;
 0.064  -0.105   1.086  -11.109;
 0.000   0.000   0.000   1.000;
****************************************
Nine parameter search.  iteration 5 nscales = 2 ...
****************************************
Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2)
 1.048  -0.091  -0.072   5.809;
 0.085   1.174   0.152  -74.577;
 0.064  -0.105   1.086  -11.109;
 0.000   0.000   0.000   1.000;
min search scale 0.025000 reached
***********************************************
Computing MAP estimate using 3481 samples...
***********************************************
dt = 5.00e-06, momentum=0.80, tol=1.00e-05
l_intensity = 1.0000
Aligning input volume to GCA...
Transform matrix
 1.04783  -0.09134  -0.07203   5.80876;
 0.08524   1.17441   0.15212  -74.57736;
 0.06363  -0.10504   1.08633  -11.10901;
 0.00000   0.00000   0.00000   1.00000;
nsamples 3481
Quasinewton: input matrix
 1.04783  -0.09134  -0.07203   5.80876;
 0.08524   1.17441   0.15212  -74.57736;
 0.06363  -0.10504   1.08633  -11.10901;
 0.00000   0.00000   0.00000   1.00000;
outof QuasiNewtonEMA: 007: -log(p) =   -0.0  tol 0.000010
Resulting transform:
 1.048  -0.091  -0.072   5.809;
 0.085   1.174   0.152  -74.577;
 0.064  -0.105   1.086  -11.109;
 0.000   0.000   0.000   1.000;

pass 1, spacing 8: log(p) = -4.2 (old=-4.0)
transform before final EM align:
 1.048  -0.091  -0.072   5.809;
 0.085   1.174   0.152  -74.577;
 0.064  -0.105   1.086  -11.109;
 0.000   0.000   0.000   1.000;

**************************************************
 EM alignment process ...
 Computing final MAP estimate using 382743 samples.
**************************************************
dt = 5.00e-06, momentum=0.80, tol=1.00e-07
l_intensity = 1.0000
Aligning input volume to GCA...
Transform matrix
 1.04783  -0.09134  -0.07203   5.80876;
 0.08524   1.17441   0.15212  -74.57736;
 0.06363  -0.10504   1.08633  -11.10901;
 0.00000   0.00000   0.00000   1.00000;
nsamples 382743
Quasinewton: input matrix
 1.04783  -0.09134  -0.07203   5.80876;
 0.08524   1.17441   0.15212  -74.57736;
 0.06363  -0.10504   1.08633  -11.10901;
 0.00000   0.00000   0.00000   1.00000;
outof QuasiNewtonEMA: 009: -log(p) =    4.6  tol 0.000000
final transform:
 1.048  -0.091  -0.072   5.809;
 0.085   1.174   0.152  -74.577;
 0.064  -0.105   1.086  -11.109;
 0.000   0.000   0.000   1.000;

writing output transformation to transforms/talairach_with_skull_2.lta...
registration took 21 minutes and 21 seconds.
#--------------------------------------
#@# SubCort Seg Tue Jul 26 19:50:10 EDT 2016

 mri_ca_label -align norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz

sysname  Linux
hostname xubuntu-VirtualBox
machine  i686

setenv SUBJECTS_DIR /usr/local/freesurfer/subjects
cd /usr/local/freesurfer/subjects/jmcoreg/mri
mri_ca_label -align norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz

renormalizing sequences with structure alignment, equivalent to:
    -renormalize
    -renormalize_mean 0.500
    -regularize 0.500
reading 1 input volumes...
reading classifier array from /usr/local/freesurfer/average/RB_all_2008-03-26.gca...
reading input volume from norm.mgz...
average std[0] = 6.9
reading transform from transforms/talairach.m3z...
Atlas used for the 3D morph was /usr/local/freesurfer/average/RB_all_2008-03-26.gca
average std = 6.9   using min determinant for regularization = 4.7
0 singular and 0 ill-conditioned covariance matrices regularized
labeling volume...
renormalizing by structure alignment....
renormalizing input #0
gca peak = 0.15151 (27)
mri peak = 0.14647 (17)
Left_Lateral_Ventricle (4): linear fit = 0.65 x + 0.0 (6380 voxels, overlap=0.030)
Left_Lateral_Ventricle (4): linear fit = 0.65 x + 0.0 (6380 voxels, peak = 18), gca=17.7
gca peak = 0.14982 (20)
mri peak = 0.17426 (17)
Right_Lateral_Ventricle (43): linear fit = 0.71 x + 0.0 (5067 voxels, overlap=0.155)
Right_Lateral_Ventricle (43): linear fit = 0.71 x + 0.0 (5067 voxels, peak = 14), gca=14.3
gca peak = 0.28003 (97)
mri peak = 0.14182 (101)
Right_Pallidum (52): linear fit = 1.03 x + 0.0 (275 voxels, overlap=1.013)
Right_Pallidum (52): linear fit = 1.03 x + 0.0 (275 voxels, peak = 100), gca=100.4
gca peak = 0.18160 (96)
mri peak = 0.12897 (101)
Left_Pallidum (13): linear fit = 1.04 x + 0.0 (309 voxels, overlap=0.832)
Left_Pallidum (13): linear fit = 1.04 x + 0.0 (309 voxels, peak = 100), gca=100.3
gca peak = 0.27536 (62)
mri peak = 0.12287 (72)
Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (719 voxels, overlap=0.316)
Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (719 voxels, peak = 69), gca=68.5
gca peak = 0.32745 (63)
mri peak = 0.09549 (71)
Left_Hippocampus (17): linear fit = 1.08 x + 0.0 (570 voxels, overlap=0.647)
Left_Hippocampus (17): linear fit = 1.08 x + 0.0 (570 voxels, peak = 68), gca=67.7
gca peak = 0.08597 (105)
mri peak = 0.11601 (108)
Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (24961 voxels, overlap=0.653)
Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (24961 voxels, peak = 108), gca=107.6
gca peak = 0.09209 (106)
mri peak = 0.08452 (109)
Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (25712 voxels, overlap=0.613)
Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (25712 voxels, peak = 111), gca=110.8
gca peak = 0.07826 (63)
mri peak = 0.04038 (76)
Left_Cerebral_Cortex (3): linear fit = 1.23 x + 0.0 (37556 voxels, overlap=0.302)
Left_Cerebral_Cortex (3): linear fit = 1.23 x + 0.0 (37556 voxels, peak = 77), gca=77.2
gca peak = 0.08598 (64)
mri peak = 0.04233 (77)
Right_Cerebral_Cortex (42): linear fit = 1.23 x + 0.0 (34441 voxels, overlap=0.271)
Right_Cerebral_Cortex (42): linear fit = 1.23 x + 0.0 (34441 voxels, peak = 78), gca=78.4
gca peak = 0.24164 (71)
mri peak = 0.14168 (91)
Right_Caudate (50): linear fit = 1.24 x + 0.0 (847 voxels, overlap=0.020)
Right_Caudate (50): linear fit = 1.24 x + 0.0 (847 voxels, peak = 88), gca=87.7
gca peak = 0.18227 (75)
mri peak = 0.18093 (92)
Left_Caudate (11): linear fit = 1.20 x + 0.0 (515 voxels, overlap=0.017)
Left_Caudate (11): linear fit = 1.20 x + 0.0 (515 voxels, peak = 90), gca=89.6
gca peak = 0.10629 (62)
mri peak = 0.07293 (77)
Left_Cerebellum_Cortex (8): linear fit = 1.25 x + 0.0 (14612 voxels, overlap=0.006)
Left_Cerebellum_Cortex (8): linear fit = 1.25 x + 0.0 (14612 voxels, peak = 77), gca=77.2
gca peak = 0.11668 (59)
mri peak = 0.06772 (75)
Right_Cerebellum_Cortex (47): linear fit = 1.23 x + 0.0 (15642 voxels, overlap=0.151)
Right_Cerebellum_Cortex (47): linear fit = 1.23 x + 0.0 (15642 voxels, peak = 72), gca=72.3
gca peak = 0.17849 (88)
mri peak = 0.11572 (95)
Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (4534 voxels, overlap=0.431)
Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (4534 voxels, peak = 95), gca=95.5
gca peak = 0.16819 (86)
mri peak = 0.11019 (91)
Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (5290 voxels, overlap=0.592)
Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (5290 voxels, peak = 92), gca=92.5
gca peak = 0.41688 (64)
mri peak = 0.12525 (75)
Left_Amygdala (18): linear fit = 1.20 x + 0.0 (248 voxels, overlap=0.064)
Left_Amygdala (18): linear fit = 1.20 x + 0.0 (248 voxels, peak = 76), gca=76.5
gca peak = 0.42394 (62)
mri peak = 0.12999 (77)
Right_Amygdala (54): linear fit = 1.21 x + 0.0 (337 voxels, overlap=0.488)
Right_Amygdala (54): linear fit = 1.21 x + 0.0 (337 voxels, peak = 75), gca=74.7
gca peak = 0.10041 (96)
mri peak = 0.08713 (103)
Left_Thalamus_Proper (10): linear fit = 1.10 x + 0.0 (3727 voxels, overlap=0.453)
Left_Thalamus_Proper (10): linear fit = 1.10 x + 0.0 (3727 voxels, peak = 105), gca=105.1
gca peak = 0.13978 (88)
mri peak = 0.08455 (103)
Right_Thalamus_Proper (49): linear fit = 1.13 x + 0.0 (3189 voxels, overlap=0.262)
Right_Thalamus_Proper (49): linear fit = 1.13 x + 0.0 (3189 voxels, peak = 100), gca=99.9
gca peak = 0.08514 (81)
mri peak = 0.07972 (94)
Left_Putamen (12): linear fit = 1.10 x + 0.0 (994 voxels, overlap=0.471)
Left_Putamen (12): linear fit = 1.10 x + 0.0 (994 voxels, peak = 89), gca=88.7
gca peak = 0.09624 (82)
mri peak = 0.08511 (87)
Right_Putamen (51): linear fit = 1.12 x + 0.0 (1217 voxels, overlap=0.438)
Right_Putamen (51): linear fit = 1.12 x + 0.0 (1217 voxels, peak = 92), gca=92.2
gca peak = 0.07543 (88)
mri peak = 0.06855 (95)
Brain_Stem (16): linear fit = 1.09 x + 0.0 (12161 voxels, overlap=0.658)
Brain_Stem (16): linear fit = 1.09 x + 0.0 (12161 voxels, peak = 95), gca=95.5
gca peak = 0.12757 (95)
mri peak = 0.08990 (106)
Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1020 voxels, overlap=0.009)
Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1020 voxels, peak = 106), gca=105.9
gca peak = 0.17004 (92)
mri peak = 0.10286 (106)
Left_VentralDC (28): linear fit = 1.11 x + 0.0 (1235 voxels, overlap=0.180)
Left_VentralDC (28): linear fit = 1.11 x + 0.0 (1235 voxels, peak = 102), gca=101.7
gca peak = 0.21361 (36)
mri peak = 0.26471 (23)
gca peak = 0.26069 (23)
mri peak = 0.24675 (20)
Fourth_Ventricle (15): linear fit = 0.77 x + 0.0 (231 voxels, overlap=0.068)
Fourth_Ventricle (15): linear fit = 0.77 x + 0.0 (231 voxels, peak = 18), gca=17.8
gca peak Unknown = 0.94427 ( 0)
gca peak Left_Inf_Lat_Vent = 0.31795 (35)
gca peak Third_Ventricle = 0.21361 (36)
gca peak CSF = 0.14367 (38)
gca peak Left_Accumbens_area = 0.57033 (70)
gca peak Left_undetermined = 1.00000 (35)
gca peak Left_vessel = 0.65201 (62)
gca peak Left_choroid_plexus = 0.09084 (48)
gca peak Right_Inf_Lat_Vent = 0.31129 (32)
gca peak Right_Accumbens_area = 0.30219 (72)
gca peak Right_vessel = 0.83418 (60)
gca peak Right_choroid_plexus = 0.10189 (48)
gca peak Fifth_Ventricle = 0.72939 (42)
gca peak WM_hypointensities = 0.14821 (82)
gca peak non_WM_hypointensities = 0.10354 (53)
gca peak Optic_Chiasm = 0.34849 (76)
not using caudate to estimate GM means
estimating mean gm scale to be 1.17 x + 0.0
estimating mean wm scale to be 1.03 x + 0.0
estimating mean csf scale to be 0.71 x + 0.0
saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
renormalizing by structure alignment....
renormalizing input #0
gca peak = 0.21595 (18)
mri peak = 0.14647 (17)
Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (6380 voxels, overlap=0.926)
Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (6380 voxels, peak = 19), gca=18.6
gca peak = 0.19392 (15)
mri peak = 0.17426 (17)
Right_Lateral_Ventricle (43): linear fit = 0.99 x + 0.0 (5067 voxels, overlap=0.827)
Right_Lateral_Ventricle (43): linear fit = 0.99 x + 0.0 (5067 voxels, peak = 15), gca=14.8
gca peak = 0.28027 (101)
mri peak = 0.14182 (101)
Right_Pallidum (52): linear fit = 1.00 x + 0.0 (275 voxels, overlap=1.009)
Right_Pallidum (52): linear fit = 1.00 x + 0.0 (275 voxels, peak = 100), gca=100.5
gca peak = 0.18297 (100)
mri peak = 0.12897 (101)
Left_Pallidum (13): linear fit = 1.00 x + 0.0 (309 voxels, overlap=1.004)
Left_Pallidum (13): linear fit = 1.00 x + 0.0 (309 voxels, peak = 100), gca=100.0
gca peak = 0.23468 (68)
mri peak = 0.12287 (72)
Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (719 voxels, overlap=0.990)
Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (719 voxels, peak = 68), gca=68.0
gca peak = 0.32092 (68)
mri peak = 0.09549 (71)
Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (570 voxels, overlap=1.003)
Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (570 voxels, peak = 68), gca=68.0
gca peak = 0.08344 (108)
mri peak = 0.11601 (108)
Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (24961 voxels, overlap=0.715)
Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (24961 voxels, peak = 108), gca=108.0
gca peak = 0.08576 (111)
mri peak = 0.08452 (109)
Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (25712 voxels, overlap=0.753)
Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (25712 voxels, peak = 111), gca=111.0
gca peak = 0.06414 (77)
mri peak = 0.04038 (76)
Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (37556 voxels, overlap=0.910)
Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (37556 voxels, peak = 76), gca=75.8
gca peak = 0.07099 (77)
mri peak = 0.04233 (77)
Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (34441 voxels, overlap=0.873)
Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (34441 voxels, peak = 75), gca=75.1
gca peak = 0.25298 (91)
mri peak = 0.14168 (91)
Right_Caudate (50): linear fit = 1.00 x + 0.0 (847 voxels, overlap=0.999)
Right_Caudate (50): linear fit = 1.00 x + 0.0 (847 voxels, peak = 91), gca=91.0
gca peak = 0.14376 (89)
mri peak = 0.18093 (92)
Left_Caudate (11): linear fit = 1.00 x + 0.0 (515 voxels, overlap=0.627)
Left_Caudate (11): linear fit = 1.00 x + 0.0 (515 voxels, peak = 89), gca=89.4
gca peak = 0.08897 (77)
mri peak = 0.07293 (77)
Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (14612 voxels, overlap=0.939)
Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (14612 voxels, peak = 77), gca=76.6
gca peak = 0.10427 (73)
mri peak = 0.06772 (75)
Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (15642 voxels, overlap=0.964)
Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (15642 voxels, peak = 72), gca=71.9
gca peak = 0.16649 (96)
mri peak = 0.11572 (95)
Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4534 voxels, overlap=0.977)
Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4534 voxels, peak = 96), gca=95.5
gca peak = 0.15715 (93)
mri peak = 0.11019 (91)
Right_Cerebellum_White_Matter (46): linear fit = 0.99 x + 0.0 (5290 voxels, overlap=0.983)
Right_Cerebellum_White_Matter (46): linear fit = 0.99 x + 0.0 (5290 voxels, peak = 92), gca=91.6
gca peak = 0.32380 (76)
mri peak = 0.12525 (75)
Left_Amygdala (18): linear fit = 0.98 x + 0.0 (248 voxels, overlap=1.005)
Left_Amygdala (18): linear fit = 0.98 x + 0.0 (248 voxels, peak = 74), gca=74.1
gca peak = 0.31848 (75)
mri peak = 0.12999 (77)
Right_Amygdala (54): linear fit = 1.01 x + 0.0 (337 voxels, overlap=1.027)
Right_Amygdala (54): linear fit = 1.01 x + 0.0 (337 voxels, peak = 76), gca=76.1
gca peak = 0.09356 (103)
mri peak = 0.08713 (103)
Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3727 voxels, overlap=0.902)
Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3727 voxels, peak = 102), gca=102.5
gca peak = 0.11046 (100)
mri peak = 0.08455 (103)
Right_Thalamus_Proper (49): linear fit = 1.01 x + 0.0 (3189 voxels, overlap=0.950)
Right_Thalamus_Proper (49): linear fit = 1.01 x + 0.0 (3189 voxels, peak = 102), gca=101.5
gca peak = 0.09559 (90)
mri peak = 0.07972 (94)
Left_Putamen (12): linear fit = 0.99 x + 0.0 (994 voxels, overlap=0.865)
Left_Putamen (12): linear fit = 0.99 x + 0.0 (994 voxels, peak = 89), gca=88.7
gca peak = 0.08283 (87)
mri peak = 0.08511 (87)
Right_Putamen (51): linear fit = 1.00 x + 0.0 (1217 voxels, overlap=0.921)
Right_Putamen (51): linear fit = 1.00 x + 0.0 (1217 voxels, peak = 87), gca=87.0
gca peak = 0.07302 (96)
mri peak = 0.06855 (95)
Brain_Stem (16): linear fit = 1.00 x + 0.0 (12161 voxels, overlap=0.842)
Brain_Stem (16): linear fit = 1.00 x + 0.0 (12161 voxels, peak = 96), gca=96.5
gca peak = 0.11158 (106)
mri peak = 0.08990 (106)
Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1020 voxels, overlap=0.764)
Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1020 voxels, peak = 105), gca=105.5
gca peak = 0.15598 (102)
mri peak = 0.10286 (106)
Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1235 voxels, overlap=0.864)
Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1235 voxels, peak = 102), gca=102.0
gca peak = 0.25517 (27)
mri peak = 0.26471 (23)
gca peak = 0.27522 (18)
mri peak = 0.24675 (20)
Fourth_Ventricle (15): linear fit = 1.00 x + 0.0 (231 voxels, overlap=0.787)
Fourth_Ventricle (15): linear fit = 1.00 x + 0.0 (231 voxels, peak = 18), gca=18.0
gca peak Unknown = 0.94427 ( 0)
gca peak Left_Inf_Lat_Vent = 0.27281 (38)
gca peak Third_Ventricle = 0.25517 (27)
gca peak CSF = 0.19364 (33)
gca peak Left_Accumbens_area = 0.45260 (83)
gca peak Left_undetermined = 1.00000 (35)
gca peak Left_vessel = 0.63638 (62)
gca peak Left_choroid_plexus = 0.09084 (48)
gca peak Right_Inf_Lat_Vent = 0.28428 (35)
gca peak Right_Accumbens_area = 0.25706 (89)
gca peak Right_vessel = 0.83418 (60)
gca peak Right_choroid_plexus = 0.10189 (48)
gca peak Fifth_Ventricle = 0.45329 (31)
gca peak WM_hypointensities = 0.14174 (84)
gca peak non_WM_hypointensities = 0.10275 (55)
gca peak Optic_Chiasm = 0.34697 (76)
not using caudate to estimate GM means
estimating mean gm scale to be 0.99 x + 0.0
estimating mean wm scale to be 1.00 x + 0.0
estimating mean csf scale to be 1.01 x + 0.0
saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt
38467 gm and wm labels changed (%25 to gray, %75 to white out of all changed labels)
429 hippocampal voxels changed.
0 amygdala voxels changed.
pass 1: 76958 changed. image ll: -2.225, PF=1.000
pass 2: 13573 changed. image ll: -2.221, PF=1.000
pass 3: 4712 changed.
writing labeled volume to aseg.auto_noCCseg.mgz...
auto-labeling took 22 minutes and 58 seconds.

 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/cc_up.lta jmcoreg

will read input aseg from aseg.auto_noCCseg.mgz
writing aseg with cc labels to aseg.auto.mgz
will write lta as /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/cc_up.lta
reading aseg from /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.auto_noCCseg.mgz
reading norm from /usr/local/freesurfer/subjects/jmcoreg/mri/norm.mgz
44564 voxels in left wm, 70544 in right wm, xrange [125, 138]
searching rotation angles z=[-8  6], y=[-10  4]
 searching scale 1 Z rot -7.5   searching scale 1 Z rot -7.3   searching scale 1 Z rot -7.0   searching scale 1 Z rot -6.8   searching scale 1 Z rot -6.5   searching scale 1 Z rot -6.3   searching scale 1 Z rot -6.0   searching scale 1 Z rot -5.8   searching scale 1 Z rot -5.5   searching scale 1 Z rot -5.3   searching scale 1 Z rot -5.0   searching scale 1 Z rot -4.8   searching scale 1 Z rot -4.5   searching scale 1 Z rot -4.3   searching scale 1 Z rot -4.0   searching scale 1 Z rot -3.8   searching scale 1 Z rot -3.5   searching scale 1 Z rot -3.3   searching scale 1 Z rot -3.0   searching scale 1 Z rot -2.8   searching scale 1 Z rot -2.5   searching scale 1 Z rot -2.3   searching scale 1 Z rot -2.0   searching scale 1 Z rot -1.8   searching scale 1 Z rot -1.5   searching scale 1 Z rot -1.3   searching scale 1 Z rot -1.0   searching scale 1 Z rot -0.8   searching scale 1 Z rot -0.5   searching scale 1 Z rot -0.3   searching scale 1 Z rot -0.0   searching scale 1 Z rot 0.2   searching scale 1 Z rot 0.5   searching scale 1 Z rot 0.7   searching scale 1 Z rot 1.0   searching scale 1 Z rot 1.2   searching scale 1 Z rot 1.5   searching scale 1 Z rot 1.7   searching scale 1 Z rot 2.0   searching scale 1 Z rot 2.2   searching scale 1 Z rot 2.5   searching scale 1 Z rot 2.7   searching scale 1 Z rot 3.0   searching scale 1 Z rot 3.2   searching scale 1 Z rot 3.5   searching scale 1 Z rot 3.7   searching scale 1 Z rot 4.0   searching scale 1 Z rot 4.2   searching scale 1 Z rot 4.5   searching scale 1 Z rot 4.7   searching scale 1 Z rot 5.0   searching scale 1 Z rot 5.2   searching scale 1 Z rot 5.5   searching scale 1 Z rot 5.7   searching scale 1 Z rot 6.0   searching scale 1 Z rot 6.2  global minimum found at slice 132.4, rotations (-2.51, -0.55)
final transformation (x=132.4, yr=-2.508, zr=-0.550):
 0.999   0.010  -0.044  -0.530;
-0.010   1.000   0.000   5.227;
 0.044  -0.000   0.999   9.313;
 0.000   0.000   0.000   1.000;
updating x range to be [125, 133] in xformed coordinates
best xformed slice 128
cc center is found at 128 152 107
eigenvectors:
-0.008  -0.012   1.000;
 0.057  -0.998  -0.012;
 0.998   0.057   0.008;
error in mid anterior detected - correcting...
writing aseg with callosum to /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.auto.mgz...
corpus callosum matter segmentation took 0.9 minutes
#--------------------------------------
#@# Merge ASeg Tue Jul 26 20:14:04 EDT 2016

 cp aseg.auto.mgz aseg.mgz

#--------------------------------------------
#@# Intensity Normalization2 Tue Jul 26 20:14:04 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_normalize -aseg aseg.mgz -mask brainmask.mgz norm.mgz brain.mgz

using segmentation for initial intensity normalization
using MR volume brainmask.mgz to mask input volume...
reading from norm.mgz...
Reading aseg aseg.mgz
normalizing image...
processing with aseg
removing outliers in the aseg WM...
2022 control points removed
Building bias image
building Voronoi diagram...
performing soap bubble smoothing, sigma = 0...
Smoothing with sigma 8
Applying bias correction
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...

Iterating 2 times
---------------------------------
3d normalization pass 1 of 2
white matter peak found at 111
white matter peak found at 109
gm peak at 83 (83), valley at 30 (30)
csf peak at 17, setting threshold to 61
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...
---------------------------------
3d normalization pass 2 of 2
white matter peak found at 111
white matter peak found at 110
gm peak at 83 (83), valley at 31 (31)
csf peak at 17, setting threshold to 61
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...
Done iterating ---------------------------------
writing output to brain.mgz
3D bias adjustment took 3 minutes and 35 seconds.
#--------------------------------------------
#@# Mask BFS Tue Jul 26 20:17:41 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz

threshold mask volume at 5
DoAbs = 0
Found 1417783 voxels in mask (pct=  8.45)
Writing masked volume to brain.finalsurfs.mgz...done.
#--------------------------------------------
#@# WM Segmentation Tue Jul 26 20:17:42 EDT 2016

 mri_segment brain.mgz wm.seg.mgz

doing initial intensity segmentation...
using local statistics to label ambiguous voxels...
computing class statistics for intensity windows...
WM (103.0): 103.6 +- 8.3 [80.0 --> 125.0]
GM (73.0) : 69.4 +- 14.8 [30.0 --> 96.0]
setting bottom of white matter range to 84.2
setting top of gray matter range to 98.9
doing initial intensity segmentation...
using local statistics to label ambiguous voxels...
using local geometry to label remaining ambiguous voxels...

reclassifying voxels using Gaussian border classifier...

removing voxels with positive offset direction...
smoothing T1 volume with sigma = 0.250
removing 1-dimensional structures...
8306 sparsely connected voxels removed...
thickening thin strands....
20 segments, 3696 filled
12955 bright non-wm voxels segmented.
4491 diagonally connected voxels added...
white matter segmentation took 2.2 minutes
writing output to wm.seg.mgz...

 mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.mgz wm.asegedit.mgz

preserving editing changes in input volume...
auto filling took 0.69 minutes
reading wm segmentation from wm.seg.mgz...
606 voxels added to wm to prevent paths from MTL structures to cortex
5046 additional wm voxels added
0 additional wm voxels added
SEG EDIT: 80723 voxels turned on, 9905 voxels turned off.
propagating editing to output volume from wm.seg.mgz
115,126,128 old 93   new 93
115,126,128 old 93   new 93
writing edited volume to wm.asegedit.mgz....

 mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz


Iteration Number : 1
pass   1 (xy+):  55 found -  55 modified     |    TOTAL:  55
pass   2 (xy+):   0 found -  55 modified     |    TOTAL:  55
pass   1 (xy-):  59 found -  59 modified     |    TOTAL: 114
pass   2 (xy-):   0 found -  59 modified     |    TOTAL: 114
pass   1 (yz+):  75 found -  75 modified     |    TOTAL: 189
pass   2 (yz+):   0 found -  75 modified     |    TOTAL: 189
pass   1 (yz-):  71 found -  71 modified     |    TOTAL: 260
pass   2 (yz-):   0 found -  71 modified     |    TOTAL: 260
pass   1 (xz+):  53 found -  53 modified     |    TOTAL: 313
pass   2 (xz+):   0 found -  53 modified     |    TOTAL: 313
pass   1 (xz-):  56 found -  56 modified     |    TOTAL: 369
pass   2 (xz-):   0 found -  56 modified     |    TOTAL: 369
Iteration Number : 1
pass   1 (+++):  65 found -  65 modified     |    TOTAL:  65
pass   2 (+++):   0 found -  65 modified     |    TOTAL:  65
pass   1 (+++):  82 found -  82 modified     |    TOTAL: 147
pass   2 (+++):   0 found -  82 modified     |    TOTAL: 147
pass   1 (+++): 104 found - 104 modified     |    TOTAL: 251
pass   2 (+++):   0 found - 104 modified     |    TOTAL: 251
pass   1 (+++):  70 found -  70 modified     |    TOTAL: 321
pass   2 (+++):   0 found -  70 modified     |    TOTAL: 321
Iteration Number : 1
pass   1 (++): 119 found - 119 modified     |    TOTAL: 119
pass   2 (++):   0 found - 119 modified     |    TOTAL: 119
pass   1 (+-):  94 found -  94 modified     |    TOTAL: 213
pass   2 (+-):   0 found -  94 modified     |    TOTAL: 213
pass   1 (--): 147 found - 147 modified     |    TOTAL: 360
pass   2 (--):   0 found - 147 modified     |    TOTAL: 360
pass   1 (-+):  89 found -  89 modified     |    TOTAL: 449
pass   2 (-+):   0 found -  89 modified     |    TOTAL: 449
Iteration Number : 2
pass   1 (xy+):   9 found -   9 modified     |    TOTAL:   9
pass   2 (xy+):   0 found -   9 modified     |    TOTAL:   9
pass   1 (xy-):  16 found -  16 modified     |    TOTAL:  25
pass   2 (xy-):   0 found -  16 modified     |    TOTAL:  25
pass   1 (yz+):  17 found -  17 modified     |    TOTAL:  42
pass   2 (yz+):   0 found -  17 modified     |    TOTAL:  42
pass   1 (yz-):  20 found -  20 modified     |    TOTAL:  62
pass   2 (yz-):   0 found -  20 modified     |    TOTAL:  62
pass   1 (xz+):  16 found -  16 modified     |    TOTAL:  78
pass   2 (xz+):   0 found -  16 modified     |    TOTAL:  78
pass   1 (xz-):  25 found -  25 modified     |    TOTAL: 103
pass   2 (xz-):   0 found -  25 modified     |    TOTAL: 103
Iteration Number : 2
pass   1 (+++):  13 found -  13 modified     |    TOTAL:  13
pass   2 (+++):   0 found -  13 modified     |    TOTAL:  13
pass   1 (+++):   0 found -   0 modified     |    TOTAL:  13
pass   1 (+++):  12 found -  12 modified     |    TOTAL:  25
pass   2 (+++):   0 found -  12 modified     |    TOTAL:  25
pass   1 (+++):   4 found -   4 modified     |    TOTAL:  29
pass   2 (+++):   0 found -   4 modified     |    TOTAL:  29
Iteration Number : 2
pass   1 (++):  13 found -  13 modified     |    TOTAL:  13
pass   2 (++):   0 found -  13 modified     |    TOTAL:  13
pass   1 (+-):  13 found -  13 modified     |    TOTAL:  26
pass   2 (+-):   0 found -  13 modified     |    TOTAL:  26
pass   1 (--):   6 found -   6 modified     |    TOTAL:  32
pass   2 (--):   0 found -   6 modified     |    TOTAL:  32
pass   1 (-+):  14 found -  14 modified     |    TOTAL:  46
pass   2 (-+):   0 found -  14 modified     |    TOTAL:  46
Iteration Number : 3
pass   1 (xy+):   3 found -   3 modified     |    TOTAL:   3
pass   2 (xy+):   0 found -   3 modified     |    TOTAL:   3
pass   1 (xy-):   0 found -   0 modified     |    TOTAL:   3
pass   1 (yz+):   5 found -   5 modified     |    TOTAL:   8
pass   2 (yz+):   0 found -   5 modified     |    TOTAL:   8
pass   1 (yz-):   0 found -   0 modified     |    TOTAL:   8
pass   1 (xz+):   2 found -   2 modified     |    TOTAL:  10
pass   2 (xz+):   0 found -   2 modified     |    TOTAL:  10
pass   1 (xz-):   3 found -   3 modified     |    TOTAL:  13
pass   2 (xz-):   0 found -   3 modified     |    TOTAL:  13
Iteration Number : 3
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 3
pass   1 (++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+-):   1 found -   1 modified     |    TOTAL:   1
pass   2 (+-):   0 found -   1 modified     |    TOTAL:   1
pass   1 (--):   0 found -   0 modified     |    TOTAL:   1
pass   1 (-+):   3 found -   3 modified     |    TOTAL:   4
pass   2 (-+):   0 found -   3 modified     |    TOTAL:   4
Iteration Number : 4
pass   1 (xy+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xy-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (yz+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (yz-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xz+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xz-):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 4
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 4
pass   1 (++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (--):   0 found -   0 modified     |    TOTAL:   0
pass   1 (-+):   0 found -   0 modified     |    TOTAL:   0

Total Number of Modified Voxels = 1334 (out of 560579: 0.237968)
binarizing input wm segmentation...
Ambiguous edge configurations...

mri_pretess done

#--------------------------------------------
#@# Fill Tue Jul 26 20:20:42 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz

logging cutting plane coordinates to ../scripts/ponscc.cut.log...
INFO: Using transforms/talairach.lta and its offset for Talairach volume ...
using segmentation aseg.auto_noCCseg.mgz...
reading input volume...done.
searching for cutting planes...voxel to talairach voxel transform
 1.054  -0.049  -0.005  -8.206;
 0.045   1.178   0.173  -72.971;
-0.000  -0.117   1.048   3.671;
 0.000   0.000   0.000   1.000;
voxel to talairach voxel transform
 1.054  -0.049  -0.005  -8.206;
 0.045   1.178   0.173  -72.971;
-0.000  -0.117   1.048   3.671;
 0.000   0.000   0.000   1.000;
reading segmented volume aseg.auto_noCCseg.mgz...
Looking for area (min, max) = (350, 1400)
area[0] = 3397 (min = 350, max = 1400), aspect = 0.75 (min = 0.10, max = 0.75)
need search nearby
using seed (126, 93, 104), TAL = (2.0, -24.0, 35.0)
talairach voxel to voxel transform
 0.947   0.039  -0.002   10.631;
-0.036   0.834  -0.138   61.063;
-0.004   0.093   0.939   3.346;
 0.000   0.000   0.000   1.000;
segmentation indicates cc at (126,  93,  104) --> (2.0, -24.0, 35.0)
done.
writing output to filled.mgz...
filling took 0.8 minutes
talairach cc position changed to (2.00, -24.00, 35.00)
Erasing brainstem...done.
seed_search_size = 9, min_neighbors = 5
search rh wm seed point around talairach space:(20.00, -24.00, 35.00) SRC: (116.40, 120.42, 109.31)
search lh wm seed point around talairach space (-16.00, -24.00, 35.00), SRC: (150.50, 119.13, 109.18)
compute mri_fill using aseg
Erasing Brain Stem and Cerebellum ...
Define left and right masks using aseg:
Building Voronoi diagram ...
Using the Voronoi diagram to separate WM into two hemispheres ...
Find the largest connected component for each hemisphere ...
#--------------------------------------------
#@# Tessellate lh Tue Jul 26 20:21:31 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz


Iteration Number : 1
pass   1 (xy+):   8 found -   8 modified     |    TOTAL:   8
pass   2 (xy+):   0 found -   8 modified     |    TOTAL:   8
pass   1 (xy-):   7 found -   7 modified     |    TOTAL:  15
pass   2 (xy-):   0 found -   7 modified     |    TOTAL:  15
pass   1 (yz+):  11 found -  11 modified     |    TOTAL:  26
pass   2 (yz+):   0 found -  11 modified     |    TOTAL:  26
pass   1 (yz-):   5 found -   5 modified     |    TOTAL:  31
pass   2 (yz-):   0 found -   5 modified     |    TOTAL:  31
pass   1 (xz+):   8 found -   8 modified     |    TOTAL:  39
pass   2 (xz+):   0 found -   8 modified     |    TOTAL:  39
pass   1 (xz-):   4 found -   4 modified     |    TOTAL:  43
pass   2 (xz-):   0 found -   4 modified     |    TOTAL:  43
Iteration Number : 1
pass   1 (+++):   2 found -   2 modified     |    TOTAL:   2
pass   2 (+++):   0 found -   2 modified     |    TOTAL:   2
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   2
pass   1 (+++):   5 found -   5 modified     |    TOTAL:   7
pass   2 (+++):   0 found -   5 modified     |    TOTAL:   7
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   7
Iteration Number : 1
pass   1 (++):   3 found -   3 modified     |    TOTAL:   3
pass   2 (++):   0 found -   3 modified     |    TOTAL:   3
pass   1 (+-):   4 found -   4 modified     |    TOTAL:   7
pass   2 (+-):   0 found -   4 modified     |    TOTAL:   7
pass   1 (--):   4 found -   4 modified     |    TOTAL:  11
pass   2 (--):   0 found -   4 modified     |    TOTAL:  11
pass   1 (-+):   2 found -   2 modified     |    TOTAL:  13
pass   2 (-+):   0 found -   2 modified     |    TOTAL:  13
Iteration Number : 2
pass   1 (xy+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xy-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (yz+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (yz-):   1 found -   1 modified     |    TOTAL:   1
pass   2 (yz-):   0 found -   1 modified     |    TOTAL:   1
pass   1 (xz+):   0 found -   0 modified     |    TOTAL:   1
pass   1 (xz-):   0 found -   0 modified     |    TOTAL:   1
Iteration Number : 2
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 2
pass   1 (++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (--):   0 found -   0 modified     |    TOTAL:   0
pass   1 (-+):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 3
pass   1 (xy+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xy-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (yz+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (yz-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xz+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xz-):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 3
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 3
pass   1 (++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (--):   0 found -   0 modified     |    TOTAL:   0
pass   1 (-+):   0 found -   0 modified     |    TOTAL:   0

Total Number of Modified Voxels = 64 (out of 276792: 0.023122)
Ambiguous edge configurations...

mri_pretess done


 mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix

$Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
slice 40: 845 vertices, 927 faces
slice 50: 6069 vertices, 6355 faces
slice 60: 15385 vertices, 15826 faces
slice 70: 26299 vertices, 26783 faces
slice 80: 38424 vertices, 39006 faces
slice 90: 50988 vertices, 51570 faces
slice 100: 63431 vertices, 64083 faces
slice 110: 76057 vertices, 76744 faces
slice 120: 88421 vertices, 89130 faces
slice 130: 100109 vertices, 100817 faces
slice 140: 110434 vertices, 111074 faces
slice 150: 118046 vertices, 118668 faces
slice 160: 125976 vertices, 126577 faces
slice 170: 132685 vertices, 133225 faces
slice 180: 137507 vertices, 137984 faces
slice 190: 140601 vertices, 141019 faces
slice 200: 141506 vertices, 141846 faces
slice 210: 141506 vertices, 141846 faces
slice 220: 141506 vertices, 141846 faces
slice 230: 141506 vertices, 141846 faces
slice 240: 141506 vertices, 141846 faces
slice 250: 141506 vertices, 141846 faces
using the conformed surface RAS to save vertex points...
writing ../surf/lh.orig.nofix
using vox2ras matrix:
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;

 rm -f ../mri/filled-pretess255.mgz


 mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix


counting number of connected components...
   141506 voxel in cpt #1: X=-340 [v=141506,e=425538,f=283692] located at (-30.302185, -21.030006, -6.130666)
For the whole surface: X=-340 [v=141506,e=425538,f=283692]
One single component has been found
nothing to do
done

#--------------------------------------------
#@# Smooth1 lh Tue Jul 26 20:21:37 EDT 2016

 mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix

/usr/local/freesurfer/subjects/jmcoreg/scripts
setting seed for random number generator to 1234
smoothing surface tessellation for 10 iterations...
smoothing complete - recomputing first and second fundamental forms...
#--------------------------------------------
#@# Inflation1 lh Tue Jul 26 20:21:41 EDT 2016

 mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix

/usr/local/freesurfer/subjects/jmcoreg/scripts
avg radius = 46.3 mm, total surface area = 73051 mm^2
writing inflated surface to ../surf/lh.inflated.nofix
inflation took 0.4 minutes
Not saving sulc
 step 000: RMS=0.122 (target=0.015)    step 005: RMS=0.096 (target=0.015)    step 010: RMS=0.083 (target=0.015)    step 015: RMS=0.077 (target=0.015)    step 020: RMS=0.074 (target=0.015)    step 025: RMS=0.072 (target=0.015)    step 030: RMS=0.071 (target=0.015)    step 035: RMS=0.070 (target=0.015)    step 040: RMS=0.069 (target=0.015)    step 045: RMS=0.068 (target=0.015)    step 050: RMS=0.067 (target=0.015)    step 055: RMS=0.067 (target=0.015)    step 060: RMS=0.067 (target=0.015)   
inflation complete.
Not saving sulc
#--------------------------------------------
#@# QSphere lh Tue Jul 26 20:22:07 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix

doing quick spherical unfolding.
setting seed for random number genererator to 1234
$Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading original vertex positions...
unfolding cortex into spherical form...
surface projected - minimizing metric distortion...
vertex spacing 1.01 +- 0.64 (0.00-->7.99) (max @ vno 76864 --> 78219)
face area 0.03 +- 0.04 (-0.33-->0.69)
scaling brain by 0.326...
inflating to sphere (rms error < 2.00)
000: dt: 0.0000, rms radial error=176.479, avgs=0
005/300: dt: 0.9000, rms radial error=176.219, avgs=0
010/300: dt: 0.9000, rms radial error=175.661, avgs=0
015/300: dt: 0.9000, rms radial error=174.929, avgs=0
020/300: dt: 0.9000, rms radial error=174.096, avgs=0
025/300: dt: 0.9000, rms radial error=173.206, avgs=0
030/300: dt: 0.9000, rms radial error=172.287, avgs=0
035/300: dt: 0.9000, rms radial error=171.351, avgs=0
040/300: dt: 0.9000, rms radial error=170.406, avgs=0
045/300: dt: 0.9000, rms radial error=169.459, avgs=0
050/300: dt: 0.9000, rms radial error=168.513, avgs=0
055/300: dt: 0.9000, rms radial error=167.569, avgs=0
060/300: dt: 0.9000, rms radial error=166.628, avgs=0
065/300: dt: 0.9000, rms radial error=165.692, avgs=0
070/300: dt: 0.9000, rms radial error=164.761, avgs=0
075/300: dt: 0.9000, rms radial error=163.834, avgs=0
080/300: dt: 0.9000, rms radial error=162.913, avgs=0
085/300: dt: 0.9000, rms radial error=161.996, avgs=0
090/300: dt: 0.9000, rms radial error=161.084, avgs=0
095/300: dt: 0.9000, rms radial error=160.176, avgs=0
100/300: dt: 0.9000, rms radial error=159.274, avgs=0
105/300: dt: 0.9000, rms radial error=158.376, avgs=0
110/300: dt: 0.9000, rms radial error=157.483, avgs=0
115/300: dt: 0.9000, rms radial error=156.595, avgs=0
120/300: dt: 0.9000, rms radial error=155.711, avgs=0
125/300: dt: 0.9000, rms radial error=154.833, avgs=0
130/300: dt: 0.9000, rms radial error=153.959, avgs=0
135/300: dt: 0.9000, rms radial error=153.091, avgs=0
140/300: dt: 0.9000, rms radial error=152.227, avgs=0
145/300: dt: 0.9000, rms radial error=151.369, avgs=0
150/300: dt: 0.9000, rms radial error=150.515, avgs=0
155/300: dt: 0.9000, rms radial error=149.666, avgs=0
160/300: dt: 0.9000, rms radial error=148.822, avgs=0
165/300: dt: 0.9000, rms radial error=147.982, avgs=0
170/300: dt: 0.9000, rms radial error=147.147, avgs=0
175/300: dt: 0.9000, rms radial error=146.316, avgs=0
180/300: dt: 0.9000, rms radial error=145.490, avgs=0
185/300: dt: 0.9000, rms radial error=144.669, avgs=0
190/300: dt: 0.9000, rms radial error=143.853, avgs=0
195/300: dt: 0.9000, rms radial error=143.043, avgs=0
200/300: dt: 0.9000, rms radial error=142.237, avgs=0
205/300: dt: 0.9000, rms radial error=141.435, avgs=0
210/300: dt: 0.9000, rms radial error=140.638, avgs=0
215/300: dt: 0.9000, rms radial error=139.845, avgs=0
220/300: dt: 0.9000, rms radial error=139.056, avgs=0
225/300: dt: 0.9000, rms radial error=138.272, avgs=0
230/300: dt: 0.9000, rms radial error=137.493, avgs=0
235/300: dt: 0.9000, rms radial error=136.718, avgs=0
240/300: dt: 0.9000, rms radial error=135.947, avgs=0
245/300: dt: 0.9000, rms radial error=135.180, avgs=0
250/300: dt: 0.9000, rms radial error=134.417, avgs=0
255/300: dt: 0.9000, rms radial error=133.659, avgs=0
260/300: dt: 0.9000, rms radial error=132.905, avgs=0
265/300: dt: 0.9000, rms radial error=132.156, avgs=0
270/300: dt: 0.9000, rms radial error=131.410, avgs=0
275/300: dt: 0.9000, rms radial error=130.669, avgs=0
280/300: dt: 0.9000, rms radial error=129.932, avgs=0
285/300: dt: 0.9000, rms radial error=129.199, avgs=0
290/300: dt: 0.9000, rms radial error=128.470, avgs=0
295/300: dt: 0.9000, rms radial error=127.745, avgs=0
300/300: dt: 0.9000, rms radial error=127.025, avgs=0

spherical inflation complete.
epoch 1 (K=10.0), pass 1, starting sse = 16496.95
taking momentum steps...
taking momentum steps...
taking momentum steps...
pass 1 complete, delta sse/iter = 0.00/10 = 0.00012
epoch 2 (K=40.0), pass 1, starting sse = 2847.22
taking momentum steps...
taking momentum steps...
taking momentum steps...
pass 1 complete, delta sse/iter = 0.00/10 = 0.00020
epoch 3 (K=160.0), pass 1, starting sse = 398.83
taking momentum steps...
taking momentum steps...
taking momentum steps...
pass 1 complete, delta sse/iter = 0.04/10 = 0.00430
epoch 4 (K=640.0), pass 1, starting sse = 80.04
taking momentum steps...
taking momentum steps...
taking momentum steps...
pass 1 complete, delta sse/iter = 0.13/13 = 0.00973
final writing spherical brain to ../surf/lh.qsphere.nofix
spherical transformation took 0.06 hours
distance error %100000.00
#--------------------------------------------
#@# Fix Topology lh Tue Jul 26 20:25:41 EDT 2016

 cp ../surf/lh.orig.nofix ../surf/lh.orig


 cp ../surf/lh.inflated.nofix ../surf/lh.inflated

/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_fix_topology -mgz -sphere qsphere.nofix -ga -seed 1234 jmcoreg lh

reading spherical homeomorphism from 'qsphere.nofix'
using genetic algorithm with optimized parameters
setting seed for random number genererator to 1234

*************************************************************
Topology Correction Parameters
retessellation mode:           genetic search
number of patches/generation : 10
number of generations :        10
surface mri loglikelihood coefficient :         1.0
volume mri loglikelihood coefficient :          10.0
normal dot loglikelihood coefficient :          1.0
quadratic curvature loglikelihood coefficient : 1.0
volume resolution :                             2
eliminate vertices during search :              1
initial patch selection :                       1
select all defect vertices :                    0
ordering dependant retessellation:              0
use precomputed edge table :                    0
smooth retessellated patch :                    2
match retessellated patch :                     1
verbose mode :                                  0

*************************************************************
INFO: assuming .mgz format
$Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
before topology correction, eno=-340 (nv=141506, nf=283692, ne=425538, g=171)
using quasi-homeomorphic spherical map to tessellate cortical surface...

Correction of the Topology
Finding true center and radius of Spherical Surface...done
Surface centered at (0,0,0) with radius 100.0 in 11 iterations
marking ambiguous vertices...
51798 ambiguous faces found in tessellation
segmenting defects...
97 defects found, arbitrating ambiguous regions...
analyzing neighboring defects...
      -merging segment 26 into 5
      -merging segment 11 into 6
      -merging segment 15 into 6
      -merging segment 19 into 6
      -merging segment 27 into 6
      -merging segment 30 into 6
      -merging segment 37 into 6
      -merging segment 20 into 6
      -merging segment 6 into 8
      -merging segment 13 into 17
      -merging segment 22 into 21
      -merging segment 24 into 21
      -merging segment 46 into 43
      -merging segment 50 into 49
      -merging segment 54 into 53
      -merging segment 67 into 75
      -merging segment 91 into 88
80 defects to be corrected
0 vertices coincident
reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.qsphere.nofix...
reading brain volume from brain...
reading wm segmentation from wm...
Computing Initial Surface Statistics
      -face       loglikelihood: -8.3872  (-4.1936)
      -vertex     loglikelihood: -5.8696  (-2.9348)
      -normal dot loglikelihood: -3.5573  (-3.5573)
      -quad curv  loglikelihood: -5.9342  (-2.9671)
      Total Loglikelihood : -23.7483

CORRECTING DEFECT 0 (vertices=43, convex hull=31)
After retessellation of defect 0, euler #=-65 (112431,330736,218240) : difference with theory (-77) = -12

CORRECTING DEFECT 1 (vertices=72, convex hull=87)
After retessellation of defect 1, euler #=-64 (112441,330803,218298) : difference with theory (-76) = -12

CORRECTING DEFECT 2 (vertices=158, convex hull=79)
After retessellation of defect 2, euler #=-63 (112481,330955,218411) : difference with theory (-75) = -12

CORRECTING DEFECT 3 (vertices=10, convex hull=20)
After retessellation of defect 3, euler #=-62 (112482,330965,218421) : difference with theory (-74) = -12

CORRECTING DEFECT 4 (vertices=40, convex hull=45)
After retessellation of defect 4, euler #=-61 (112490,331005,218454) : difference with theory (-73) = -12

CORRECTING DEFECT 5 (vertices=2011, convex hull=639)
After retessellation of defect 5, euler #=-60 (112964,332770,219746) : difference with theory (-72) = -12

CORRECTING DEFECT 6 (vertices=1658, convex hull=704)
After retessellation of defect 6, euler #=-64 (113591,335053,221398) : difference with theory (-71) = -7

CORRECTING DEFECT 7 (vertices=15773, convex hull=4410)
After retessellation of defect 7, euler #=-76 (118352,351903,233475) : difference with theory (-70) = 6

CORRECTING DEFECT 8 (vertices=51, convex hull=29)
After retessellation of defect 8, euler #=-75 (118358,351931,233498) : difference with theory (-69) = 6

CORRECTING DEFECT 9 (vertices=57, convex hull=93)
After retessellation of defect 9, euler #=-74 (118376,352023,233573) : difference with theory (-68) = 6

CORRECTING DEFECT 10 (vertices=75, convex hull=92)
After retessellation of defect 10, euler #=-73 (118395,352122,233654) : difference with theory (-67) = 6

CORRECTING DEFECT 11 (vertices=28, convex hull=34)
After retessellation of defect 11, euler #=-72 (118398,352143,233673) : difference with theory (-66) = 6

CORRECTING DEFECT 12 (vertices=313, convex hull=359)
After retessellation of defect 12, euler #=-71 (118506,352639,234062) : difference with theory (-65) = 6

CORRECTING DEFECT 13 (vertices=19, convex hull=23)
After retessellation of defect 13, euler #=-69 (118507,352646,234070) : difference with theory (-64) = 5

CORRECTING DEFECT 14 (vertices=8, convex hull=22)
After retessellation of defect 14, euler #=-68 (118507,352653,234078) : difference with theory (-63) = 5

CORRECTING DEFECT 15 (vertices=321, convex hull=290)
After retessellation of defect 15, euler #=-65 (118634,353186,234487) : difference with theory (-62) = 3

CORRECTING DEFECT 16 (vertices=56, convex hull=27)
After retessellation of defect 16, euler #=-64 (118635,353196,234497) : difference with theory (-61) = 3

CORRECTING DEFECT 17 (vertices=43, convex hull=73)
After retessellation of defect 17, euler #=-63 (118649,353266,234554) : difference with theory (-60) = 3

CORRECTING DEFECT 18 (vertices=47, convex hull=25)
After retessellation of defect 18, euler #=-62 (118653,353285,234570) : difference with theory (-59) = 3

CORRECTING DEFECT 19 (vertices=1107, convex hull=730)
After retessellation of defect 19, euler #=-61 (119048,354828,235719) : difference with theory (-58) = 3

CORRECTING DEFECT 20 (vertices=52, convex hull=31)
After retessellation of defect 20, euler #=-60 (119054,354856,235742) : difference with theory (-57) = 3

CORRECTING DEFECT 21 (vertices=297, convex hull=243)
After retessellation of defect 21, euler #=-59 (119120,355175,235996) : difference with theory (-56) = 3

CORRECTING DEFECT 22 (vertices=128, convex hull=137)
After retessellation of defect 22, euler #=-58 (119182,355419,236179) : difference with theory (-55) = 3

CORRECTING DEFECT 23 (vertices=46, convex hull=72)
After retessellation of defect 23, euler #=-57 (119205,355517,236255) : difference with theory (-54) = 3

CORRECTING DEFECT 24 (vertices=34, convex hull=58)
After retessellation of defect 24, euler #=-56 (119221,355586,236309) : difference with theory (-53) = 3

CORRECTING DEFECT 25 (vertices=28, convex hull=63)
After retessellation of defect 25, euler #=-55 (119230,355636,236351) : difference with theory (-52) = 3

CORRECTING DEFECT 26 (vertices=18, convex hull=24)
After retessellation of defect 26, euler #=-54 (119232,355648,236362) : difference with theory (-51) = 3

CORRECTING DEFECT 27 (vertices=39, convex hull=25)
After retessellation of defect 27, euler #=-53 (119234,355660,236373) : difference with theory (-50) = 3

CORRECTING DEFECT 28 (vertices=22, convex hull=16)
After retessellation of defect 28, euler #=-52 (119237,355675,236386) : difference with theory (-49) = 3

CORRECTING DEFECT 29 (vertices=600, convex hull=233)
After retessellation of defect 29, euler #=-51 (119255,355842,236536) : difference with theory (-48) = 3

CORRECTING DEFECT 30 (vertices=15, convex hull=32)
After retessellation of defect 30, euler #=-50 (119258,355863,236555) : difference with theory (-47) = 3

CORRECTING DEFECT 31 (vertices=54, convex hull=47)
After retessellation of defect 31, euler #=-48 (119263,355900,236589) : difference with theory (-46) = 2

CORRECTING DEFECT 32 (vertices=77, convex hull=106)
After retessellation of defect 32, euler #=-47 (119288,356021,236686) : difference with theory (-45) = 2

CORRECTING DEFECT 33 (vertices=6, convex hull=23)
After retessellation of defect 33, euler #=-46 (119290,356032,236696) : difference with theory (-44) = 2

CORRECTING DEFECT 34 (vertices=49, convex hull=73)
After retessellation of defect 34, euler #=-45 (119304,356104,236755) : difference with theory (-43) = 2

CORRECTING DEFECT 35 (vertices=59, convex hull=52)
After retessellation of defect 35, euler #=-44 (119321,356176,236811) : difference with theory (-42) = 2

CORRECTING DEFECT 36 (vertices=736, convex hull=597)
After retessellation of defect 36, euler #=-43 (119428,356813,237342) : difference with theory (-41) = 2

CORRECTING DEFECT 37 (vertices=6, convex hull=23)
After retessellation of defect 37, euler #=-42 (119429,356825,237354) : difference with theory (-40) = 2

CORRECTING DEFECT 38 (vertices=108, convex hull=119)
After retessellation of defect 38, euler #=-41 (119465,356983,237477) : difference with theory (-39) = 2

CORRECTING DEFECT 39 (vertices=483, convex hull=260)
After retessellation of defect 39, euler #=-40 (119691,357806,238075) : difference with theory (-38) = 2

CORRECTING DEFECT 40 (vertices=31, convex hull=40)
After retessellation of defect 40, euler #=-39 (119697,357838,238102) : difference with theory (-37) = 2

CORRECTING DEFECT 41 (vertices=6, convex hull=18)
After retessellation of defect 41, euler #=-38 (119699,357849,238112) : difference with theory (-36) = 2

CORRECTING DEFECT 42 (vertices=6, convex hull=16)
After retessellation of defect 42, euler #=-37 (119700,357856,238119) : difference with theory (-35) = 2

CORRECTING DEFECT 43 (vertices=876, convex hull=562)
After retessellation of defect 43, euler #=-36 (120030,359133,239067) : difference with theory (-34) = 2

CORRECTING DEFECT 44 (vertices=25, convex hull=50)
After retessellation of defect 44, euler #=-35 (120040,359179,239104) : difference with theory (-33) = 2

CORRECTING DEFECT 45 (vertices=46, convex hull=74)
After retessellation of defect 45, euler #=-34 (120074,359314,239206) : difference with theory (-32) = 2

CORRECTING DEFECT 46 (vertices=90, convex hull=80)
After retessellation of defect 46, euler #=-33 (120083,359373,239257) : difference with theory (-31) = 2

CORRECTING DEFECT 47 (vertices=112, convex hull=104)
After retessellation of defect 47, euler #=-32 (120123,359539,239384) : difference with theory (-30) = 2

CORRECTING DEFECT 48 (vertices=73, convex hull=92)
After retessellation of defect 48, euler #=-31 (120160,359691,239500) : difference with theory (-29) = 2

CORRECTING DEFECT 49 (vertices=39, convex hull=30)
After retessellation of defect 49, euler #=-30 (120166,359718,239522) : difference with theory (-28) = 2

CORRECTING DEFECT 50 (vertices=18, convex hull=21)
After retessellation of defect 50, euler #=-29 (120168,359729,239532) : difference with theory (-27) = 2

CORRECTING DEFECT 51 (vertices=34, convex hull=69)
After retessellation of defect 51, euler #=-28 (120177,359782,239577) : difference with theory (-26) = 2

CORRECTING DEFECT 52 (vertices=25, convex hull=26)
After retessellation of defect 52, euler #=-27 (120180,359799,239592) : difference with theory (-25) = 2

CORRECTING DEFECT 53 (vertices=68, convex hull=82)
After retessellation of defect 53, euler #=-26 (120208,359917,239683) : difference with theory (-24) = 2

CORRECTING DEFECT 54 (vertices=66, convex hull=81)
After retessellation of defect 54, euler #=-25 (120244,360061,239792) : difference with theory (-23) = 2

CORRECTING DEFECT 55 (vertices=90, convex hull=50)
After retessellation of defect 55, euler #=-24 (120258,360119,239837) : difference with theory (-22) = 2

CORRECTING DEFECT 56 (vertices=88, convex hull=92)
After retessellation of defect 56, euler #=-23 (120294,360268,239951) : difference with theory (-21) = 2

CORRECTING DEFECT 57 (vertices=81, convex hull=76)
After retessellation of defect 57, euler #=-22 (120335,360423,240066) : difference with theory (-20) = 2

CORRECTING DEFECT 58 (vertices=20, convex hull=28)
After retessellation of defect 58, euler #=-21 (120337,360438,240080) : difference with theory (-19) = 2

CORRECTING DEFECT 59 (vertices=218, convex hull=101)
After retessellation of defect 59, euler #=-19 (120365,360565,240181) : difference with theory (-18) = 1

CORRECTING DEFECT 60 (vertices=44, convex hull=63)
After retessellation of defect 60, euler #=-18 (120392,360671,240261) : difference with theory (-17) = 1

CORRECTING DEFECT 61 (vertices=81, convex hull=65)
After retessellation of defect 61, euler #=-17 (120424,360793,240352) : difference with theory (-16) = 1

CORRECTING DEFECT 62 (vertices=34, convex hull=26)
After retessellation of defect 62, euler #=-16 (120430,360817,240371) : difference with theory (-15) = 1

CORRECTING DEFECT 63 (vertices=102, convex hull=58)
After retessellation of defect 63, euler #=-15 (120450,360900,240435) : difference with theory (-14) = 1

CORRECTING DEFECT 64 (vertices=67, convex hull=105)
After retessellation of defect 64, euler #=-14 (120472,361010,240524) : difference with theory (-13) = 1

CORRECTING DEFECT 65 (vertices=21, convex hull=39)
After retessellation of defect 65, euler #=-13 (120475,361031,240543) : difference with theory (-12) = 1

CORRECTING DEFECT 66 (vertices=64, convex hull=42)
After retessellation of defect 66, euler #=-12 (120482,361069,240575) : difference with theory (-11) = 1

CORRECTING DEFECT 67 (vertices=43, convex hull=95)
After retessellation of defect 67, euler #=-11 (120507,361185,240667) : difference with theory (-10) = 1

CORRECTING DEFECT 68 (vertices=46, convex hull=24)
After retessellation of defect 68, euler #=-10 (120517,361221,240694) : difference with theory (-9) = 1

CORRECTING DEFECT 69 (vertices=41, convex hull=45)
After retessellation of defect 69, euler #=-9 (120526,361267,240732) : difference with theory (-8) = 1

CORRECTING DEFECT 70 (vertices=51, convex hull=35)
After retessellation of defect 70, euler #=-8 (120530,361300,240762) : difference with theory (-7) = 1

CORRECTING DEFECT 71 (vertices=19, convex hull=34)
After retessellation of defect 71, euler #=-7 (120533,361319,240779) : difference with theory (-6) = 1

CORRECTING DEFECT 72 (vertices=1298, convex hull=160)
After retessellation of defect 72, euler #=-5 (120574,361520,240941) : difference with theory (-5) = 0

CORRECTING DEFECT 73 (vertices=26, convex hull=53)
After retessellation of defect 73, euler #=-4 (120583,361569,240982) : difference with theory (-4) = 0

CORRECTING DEFECT 74 (vertices=108, convex hull=86)
After retessellation of defect 74, euler #=-3 (120600,361659,241056) : difference with theory (-3) = 0

CORRECTING DEFECT 75 (vertices=49, convex hull=87)
After retessellation of defect 75, euler #=-2 (120626,361774,241146) : difference with theory (-2) = 0

CORRECTING DEFECT 76 (vertices=38, convex hull=49)
After retessellation of defect 76, euler #=-1 (120628,361802,241173) : difference with theory (-1) = 0

CORRECTING DEFECT 77 (vertices=12, convex hull=33)
After retessellation of defect 77, euler #=0 (120631,361821,241190) : difference with theory (0) = 0

CORRECTING DEFECT 78 (vertices=128, convex hull=111)
After retessellation of defect 78, euler #=1 (120677,362004,241328) : difference with theory (1) = 0

CORRECTING DEFECT 79 (vertices=20, convex hull=53)
After retessellation of defect 79, euler #=2 (120687,362055,241370) : difference with theory (2) = 0
computing original vertex metric properties...
storing new metric properties...
computing tessellation statistics...
vertex spacing 0.91 +- 0.34 (0.02-->14.12) (max @ vno 44204 --> 50884)
face area 0.00 +- 0.00 (0.00-->0.00)
performing soap bubble on retessellated vertices for 0 iterations...
vertex spacing 0.91 +- 0.34 (0.02-->14.12) (max @ vno 44204 --> 50884)
face area 0.00 +- 0.00 (0.00-->0.00)
tessellation finished, orienting corrected surface...
281 mutations (35.6%), 508 crossovers (64.4%), 743 vertices were eliminated
building final representation...
20819 vertices and 0 faces have been removed from triangulation
after topology correction, eno=2 (nv=120687, nf=241370, ne=362055, g=0)
writing corrected surface to /usr/local/freesurfer/subjects/jmcoreg/surf/lh.orig...

0.000 % of the vertices (0 vertices) exhibit an orientation change
topology fixing took 222.2 minutes
0 defective edges
removing intersecting faces
000: 3684 intersecting
001: 513 intersecting
002: 315 intersecting
003: 227 intersecting
004: 165 intersecting
005: 163 intersecting
006: 122 intersecting
007: 116 intersecting
008: 109 intersecting
expanding nbhd size to 2
009: 128 intersecting
010: 81 intersecting
011: 79 intersecting
012: 74 intersecting
013: 73 intersecting
014: 67 intersecting
015: 66 intersecting
016: 64 intersecting
017: 63 intersecting
expanding nbhd size to 3
018: 63 intersecting
019: 60 intersecting
expanding nbhd size to 4
020: 61 intersecting
021: 58 intersecting
022: 55 intersecting
023: 54 intersecting
024: 53 intersecting
expanding nbhd size to 5
025: 53 intersecting
expanding nbhd size to 6
026: 53 intersecting
027: 52 intersecting
028: 50 intersecting
expanding nbhd size to 7
029: 52 intersecting
030: 51 intersecting
expanding nbhd size to 8
031: 54 intersecting
032: 47 intersecting
033: 40 intersecting
034: 35 intersecting
035: 33 intersecting
036: 32 intersecting
037: 30 intersecting
expanding nbhd size to 9
038: 35 intersecting
039: 26 intersecting
expanding nbhd size to 10
040: 27 intersecting
expanding nbhd size to 11
041: 27 intersecting
expanding nbhd size to 12
042: 31 intersecting
expanding nbhd size to 13
043: 32 intersecting
044: 22 intersecting
expanding nbhd size to 14
045: 22 intersecting

 mris_euler_number ../surf/lh.orig

euler # = v-e+f = 2g-2: 120687 - 362055 + 241370 = 2 --> 0 holes
      F =2V-4:          241370 = 241374-4 (0)
      2E=3F:            724110 = 724110 (0)

total defect index = 0
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_remove_intersection ../surf/lh.orig ../surf/lh.orig

intersection removal took 0.02 hours
removing intersecting faces
000: 2054 intersecting
001: 510 intersecting
002: 303 intersecting
003: 214 intersecting
004: 174 intersecting
005: 157 intersecting
006: 127 intersecting
007: 120 intersecting
expanding nbhd size to 2
008: 120 intersecting
009: 119 intersecting
010: 93 intersecting
011: 78 intersecting
012: 70 intersecting
013: 68 intersecting
014: 67 intersecting
015: 65 intersecting
expanding nbhd size to 3
016: 65 intersecting
expanding nbhd size to 4
017: 66 intersecting
018: 64 intersecting
019: 61 intersecting
020: 57 intersecting
expanding nbhd size to 5
021: 58 intersecting
022: 55 intersecting
023: 51 intersecting
expanding nbhd size to 6
024: 51 intersecting
expanding nbhd size to 7
025: 51 intersecting
026: 49 intersecting
expanding nbhd size to 8
027: 50 intersecting
expanding nbhd size to 9
028: 52 intersecting
029: 49 intersecting
expanding nbhd size to 10
030: 52 intersecting
031: 43 intersecting
032: 41 intersecting
033: 37 intersecting
034: 31 intersecting
035: 26 intersecting
expanding nbhd size to 11
036: 27 intersecting
expanding nbhd size to 12
037: 30 intersecting
expanding nbhd size to 13
038: 30 intersecting
expanding nbhd size to 14
039: 31 intersecting
040: 25 intersecting
expanding nbhd size to 15
041: 30 intersecting
expanding nbhd size to 16
042: 36 intersecting
043: 31 intersecting
044: 28 intersecting
045: 22 intersecting
expanding nbhd size to 17
046: 23 intersecting
047: 21 intersecting
expanding nbhd size to 18
048: 22 intersecting
expanding nbhd size to 19
049: 24 intersecting
expanding nbhd size to 20
050: 31 intersecting
051: 23 intersecting
expanding nbhd size to 21
052: 29 intersecting
053: 28 intersecting
054: 27 intersecting
055: 22 intersecting
expanding nbhd size to 22
056: 24 intersecting
expanding nbhd size to 23
057: 30 intersecting
expanding nbhd size to 24
058: 33 intersecting
expanding nbhd size to 25
059: 33 intersecting
060: 16 intersecting
061: 10 intersecting
062: 6 intersecting
expanding nbhd size to 26
063: 8 intersecting
064: 7 intersecting
065: 5 intersecting
expanding nbhd size to 27
066: 8 intersecting
expanding nbhd size to 28
067: 14 intersecting
expanding nbhd size to 29
068: 15 intersecting
069: 13 intersecting
070: 9 intersecting
expanding nbhd size to 30
071: 10 intersecting
072: 7 intersecting
073: 6 intersecting
expanding nbhd size to 31
074: 6 intersecting
expanding nbhd size to 32
075: 6 intersecting
expanding nbhd size to 33
076: 6 intersecting
077: 4 intersecting
expanding nbhd size to 34
078: 8 intersecting
079: 4 intersecting
080: 3 intersecting
expanding nbhd size to 35
081: 3 intersecting
expanding nbhd size to 36
082: 3 intersecting
expanding nbhd size to 37
083: 3 intersecting
084: 2 intersecting
expanding nbhd size to 38
085: 2 intersecting
expanding nbhd size to 39
086: 3 intersecting
expanding nbhd size to 40
087: 3 intersecting
expanding nbhd size to 41
088: 5 intersecting
expanding nbhd size to 42
089: 7 intersecting
090: 3 intersecting
091: 2 intersecting
writing corrected surface to ../surf/lh.orig

 rm ../surf/lh.inflated

#--------------------------------------------
#@# Make White Surf lh Wed Jul 27 00:09:02 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_make_surfaces -noaparc -whiteonly -mgz -T1 brain.finalsurfs jmcoreg lh

only generating white matter surface
not using aparc to prevent surfaces crossing the midline
INFO: assuming MGZ format for volumes.
using brain.finalsurfs as T1 volume...
$Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $
$Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/filled.mgz...
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/brain.finalsurfs.mgz...
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
10320 bright wm thresholded.
12527 bright non-wm voxels segmented.
reading original surface position from /usr/local/freesurfer/subjects/jmcoreg/surf/lh.orig...
computing class statistics...
border white:    261039 voxels (1.56%)
border gray      319152 voxels (1.90%)
WM (96.0): 96.1 +- 6.5 [70.0 --> 110.0]
GM (87.0) : 84.7 +- 11.3 [30.0 --> 110.0]
setting MIN_GRAY_AT_WHITE_BORDER to 70.7 (was 70)
setting MAX_BORDER_WHITE to 106.5 (was 105)
setting MIN_BORDER_WHITE to 82.0 (was 85)
setting MAX_CSF to 59.5 (was 40)
setting MAX_GRAY to 93.5 (was 95)
setting MAX_GRAY_AT_CSF_BORDER to 76.4 (was 75)
setting MIN_GRAY_AT_CSF_BORDER to 48.2 (was 40)
repositioning cortical surface to gray/white boundary
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.mgz...
smoothing T1 volume with sigma = 2.000
vertex spacing 0.79 +- 0.26 (0.01-->5.79) (max @ vno 116923 --> 116925)
face area 0.26 +- 0.15 (0.00-->5.68)
mean absolute distance = 1.06 +- 1.36
4979 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
smoothing contralateral hemisphere...
using class modes intead of means, discounting robust sigmas....
intensity peaks found at WM=100,    GM=82
mean inside = 94.2, mean outside = 85.2
smoothing surface for 5 iterations...
inhibiting deformation at non-cortical midline structures...
removing 4 vertex label from ripped group
mean border=89.3, 1129 (1129) missing vertices, mean dist -0.1 [1.3 (%44.2)->0.9 (%55.8))]
%52 local maxima, %41 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=2.0, host=xubun, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
complete_dist_mat 0
rms 0
smooth_averages 0
remove_neg 0
ico_order 0
which_surface 0
target_radius 0.000000
nfields 0
scale 0.000000
desired_rms_height 0.000000
momentum 0.000000
nbhd_size 0
max_nbrs 0
niterations 25
nsurfaces 0
SURFACES 3
flags 0 (0)
use curv 0
no sulc 0
no rigid align 0
mris->nsize 2
mris->hemisphere 0
randomSeed 0

smoothing T1 volume with sigma = 1.000
vertex spacing 0.88 +- 0.30 (0.03-->5.91) (max @ vno 116925 --> 117806)
face area 0.26 +- 0.16 (0.00-->6.21)
mean absolute distance = 0.54 +- 0.95
4524 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=5103259.5, rms=9.72
001: dt: 0.5000, sse=5023280.0, rms=8.186 (0.000%)
002: dt: 0.5000, sse=5015669.5, rms=7.048 (0.000%)
003: dt: 0.5000, sse=4988587.0, rms=6.209 (0.000%)
004: dt: 0.5000, sse=4898796.5, rms=5.571 (0.000%)
005: dt: 0.5000, sse=4819302.5, rms=5.064 (0.000%)
006: dt: 0.5000, sse=4709776.5, rms=4.729 (0.000%)
007: dt: 0.5000, sse=4654139.5, rms=4.474 (0.000%)
008: dt: 0.5000, sse=4610792.0, rms=4.282 (0.000%)
009: dt: 0.5000, sse=4557201.5, rms=4.059 (0.000%)
010: dt: 0.5000, sse=4516262.0, rms=3.871 (0.000%)
011: dt: 0.5000, sse=4479054.5, rms=3.619 (0.000%)
012: dt: 0.5000, sse=4423523.0, rms=3.448 (0.000%)
013: dt: 0.5000, sse=4415352.0, rms=3.290 (0.000%)
014: dt: 0.5000, sse=4402282.0, rms=3.082 (0.000%)
015: dt: 0.5000, sse=4400455.0, rms=2.943 (0.000%)
016: dt: 0.5000, sse=4355674.0, rms=2.761 (0.000%)
017: dt: 0.5000, sse=4347675.5, rms=2.698 (0.000%)
018: dt: 0.5000, sse=4331371.0, rms=2.631 (0.000%)
rms = 2.59, time step reduction 1 of 3 to 0.250...
019: dt: 0.5000, sse=4315516.5, rms=2.587 (0.000%)
020: dt: 0.2500, sse=3301363.5, rms=2.306 (0.000%)
rms = 2.26, time step reduction 2 of 3 to 0.125...
021: dt: 0.2500, sse=3191416.0, rms=2.258 (0.000%)
022: dt: 0.1250, sse=3128083.5, rms=2.201 (0.000%)
rms = 2.17, time step reduction 3 of 3 to 0.062...
023: dt: 0.1250, sse=3097413.0, rms=2.172 (0.000%)
positioning took 1.9 minutes
inhibiting deformation at non-cortical midline structures...
removing 4 vertex label from ripped group
removing 2 vertex label from ripped group
mean border=90.5, 1153 (483) missing vertices, mean dist -0.2 [0.7 (%58.6)->0.4 (%41.4))]
%60 local maxima, %32 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=1.0, host=xubun, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.500
vertex spacing 0.88 +- 0.30 (0.03-->5.95) (max @ vno 116925 --> 117806)
face area 0.32 +- 0.20 (0.00-->7.27)
mean absolute distance = 0.43 +- 0.66
3766 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3307462.2, rms=3.30
024: dt: 0.5000, sse=3577992.2, rms=2.596 (0.000%)
025: dt: 0.5000, sse=3796668.0, rms=2.295 (0.000%)
026: dt: 0.5000, sse=3822548.5, rms=2.208 (0.000%)
027: dt: 0.5000, sse=3891154.8, rms=2.106 (0.000%)
rms = 2.11, time step reduction 1 of 3 to 0.250...
028: dt: 0.2500, sse=3539894.2, rms=1.956 (0.000%)
029: dt: 0.2500, sse=3383149.2, rms=1.894 (0.000%)
rms = 1.91, time step reduction 2 of 3 to 0.125...
rms = 1.87, time step reduction 3 of 3 to 0.062...
030: dt: 0.1250, sse=3347328.2, rms=1.867 (0.000%)
positioning took 0.7 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
removing 2 vertex label from ripped group
removing 3 vertex label from ripped group
removing 1 vertex label from ripped group
mean border=91.7, 1302 (400) missing vertices, mean dist -0.2 [0.5 (%60.4)->0.3 (%39.6))]
%71 local maxima, %21 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=0.5, host=xubun, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.250
vertex spacing 0.88 +- 0.30 (0.02-->5.96) (max @ vno 29571 --> 30451)
face area 0.32 +- 0.20 (0.00-->7.41)
mean absolute distance = 0.37 +- 0.52
3143 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3433857.0, rms=2.72
031: dt: 0.5000, sse=3711213.5, rms=2.163 (0.000%)
032: dt: 0.5000, sse=3892399.0, rms=1.906 (0.000%)
rms = 1.99, time step reduction 1 of 3 to 0.250...
033: dt: 0.2500, sse=3625216.5, rms=1.786 (0.000%)
rms = 1.77, time step reduction 2 of 3 to 0.125...
034: dt: 0.2500, sse=3540767.5, rms=1.766 (0.000%)
035: dt: 0.1250, sse=3520584.2, rms=1.696 (0.000%)
rms = 1.68, time step reduction 3 of 3 to 0.062...
036: dt: 0.1250, sse=3494112.0, rms=1.676 (0.000%)
positioning took 0.5 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
removing 4 vertex label from ripped group
removing 4 vertex label from ripped group
removing 4 vertex label from ripped group
removing 3 vertex label from ripped group
mean border=92.3, 1400 (370) missing vertices, mean dist -0.1 [0.4 (%55.3)->0.3 (%44.7))]
%77 local maxima, %14 large gradients and % 1 min vals, 0 gradients ignored
tol=1.0e-04, sigma=0.2, host=xubun, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
writing white matter surface to /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white...
writing smoothed curvature to lh.curv
000: dt: 0.0000, sse=3512629.0, rms=2.00
037: dt: 0.5000, sse=4199021.5, rms=1.931 (0.000%)
038: dt: 0.5000, sse=4048625.8, rms=1.767 (0.000%)
rms = 1.96, time step reduction 1 of 3 to 0.250...
039: dt: 0.2500, sse=3916482.5, rms=1.616 (0.000%)
rms = 1.65, time step reduction 2 of 3 to 0.125...
rms = 1.58, time step reduction 3 of 3 to 0.062...
040: dt: 0.1250, sse=3885941.5, rms=1.579 (0.000%)
positioning took 0.4 minutes
inhibiting deformation at non-cortical midline structures...
removing 4 vertex label from ripped group
generating cortex label...
18 non-cortical segments detected
only using segment with 1311 vertices
erasing segment 0 (vno[0] = 35932)
erasing segment 1 (vno[0] = 49380)
erasing segment 3 (vno[0] = 53023)
erasing segment 4 (vno[0] = 59141)
erasing segment 5 (vno[0] = 65111)
erasing segment 6 (vno[0] = 74336)
erasing segment 7 (vno[0] = 74751)
erasing segment 8 (vno[0] = 75433)
erasing segment 9 (vno[0] = 76545)
erasing segment 10 (vno[0] = 79756)
erasing segment 11 (vno[0] = 81401)
erasing segment 12 (vno[0] = 82342)
erasing segment 13 (vno[0] = 87037)
erasing segment 14 (vno[0] = 117127)
erasing segment 15 (vno[0] = 120209)
erasing segment 16 (vno[0] = 120217)
erasing segment 17 (vno[0] = 120243)
writing cortex label to /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label...
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.curv
writing smoothed area to lh.area
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.area
vertex spacing 0.87 +- 0.30 (0.02-->6.00) (max @ vno 116925 --> 117806)
face area 0.32 +- 0.20 (0.00-->7.14)
refinement took 5.0 minutes
#--------------------------------------------
#@# Smooth2 lh Wed Jul 27 00:14:01 EDT 2016

 mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white ../surf/lh.smoothwm

/usr/local/freesurfer/subjects/jmcoreg/scripts
smoothing for 3 iterations
setting seed for random number generator to 1234
smoothing surface tessellation for 3 iterations...
smoothing complete - recomputing first and second fundamental forms...
#--------------------------------------------
#@# Inflation2 lh Wed Jul 27 00:14:04 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated

avg radius = 45.6 mm, total surface area = 69468 mm^2
writing inflated surface to ../surf/lh.inflated
writing sulcal depths to ../surf/lh.sulc
 step 000: RMS=0.120 (target=0.015)    step 005: RMS=0.088 (target=0.015)    step 010: RMS=0.070 (target=0.015)    step 015: RMS=0.059 (target=0.015)    step 020: RMS=0.050 (target=0.015)    step 025: RMS=0.044 (target=0.015)    step 030: RMS=0.037 (target=0.015)    step 035: RMS=0.033 (target=0.015)    step 040: RMS=0.030 (target=0.015)    step 045: RMS=0.026 (target=0.015)    step 050: RMS=0.024 (target=0.015)    step 055: RMS=0.023 (target=0.015)    step 060: RMS=0.021 (target=0.015)   
inflation complete.
inflation took 0.4 minutes

 mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/lh.inflated

normalizing curvature values.
averaging curvature patterns 5 times.
sampling 10 neighbors out to a distance of 10 mm
104 vertices thresholded to be in k1 ~ [-0.35 0.55], k2 ~ [-0.16 0.09]
total integrated curvature = 0.364*4pi (4.571) --> 1 handles
ICI = 1.3, FI = 8.1, variation=140.744
113 vertices thresholded to be in [-0.03 0.03]
writing Gaussian curvature to ../surf/lh.inflated.K...thresholding curvature at 99.90% level
curvature mean = 0.000, std = 0.001
106 vertices thresholded to be in [-0.21 0.15]
done.
writing mean curvature to ../surf/lh.inflated.H...curvature mean = -0.018, std = 0.023
done.

#-----------------------------------------
#@# Curvature Stats lh Wed Jul 27 00:15:48 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/surf

 mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm jmcoreg lh curv sulc

             Toggling save flag on curvature files                       [ ok ]
                 Outputting results using filestem   [ ../stats/lh.curv.stats ]
             Toggling save flag on curvature files                       [ ok ]
                                   Setting surface      [ jmcoreg/lh.smoothwm ]
                                Reading surface...                       [ ok ]
                                   Setting texture                     [ curv ]
                                Reading texture...                       [ ok ]
                                   Setting texture                     [ sulc ]
                                Reading texture...Gb_filter = 0
                       [ ok ]
      Calculating Discrete Principal Curvatures...
   Determining geometric order for vertex faces... [####################] [ ok ]
                      Determining KH curvatures... [####################] [ ok ]
                    Determining k1k2 curvatures... [####################] [ ok ]
                                   deltaViolations                      [ 275 ]
Gb_filter = 0

WARN:    S lookup   min:                          -2.152049
WARN:    S explicit min:                          0.000000    vertex = 792
#--------------------------------------------
#@# Sphere lh Wed Jul 27 00:15:51 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere

setting seed for random number genererator to 1234
$Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading original vertex positions...
unfolding cortex into spherical form...
surface projected - minimizing metric distortion...
scaling brain by 0.316...
MRISunfold() max_passes = 1 -------
tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
using quadratic fit line minimization
complete_dist_mat 0
rms 0
smooth_averages 0
remove_neg 0
ico_order 0
which_surface 0
target_radius 0.000000
nfields 0
scale 1.000000
desired_rms_height -1.000000
momentum 0.900000
nbhd_size 7
max_nbrs 8
niterations 25
nsurfaces 0
SURFACES 3
flags 0 (0)
use curv 0
no sulc 0
no rigid align 0
mris->nsize 2
mris->hemisphere 0
randomSeed 1234

--------------------
  mrisRemoveNegativeArea()
pass 1: epoch 1 of 3 starting distance error %19.53
pass 1: epoch 2 of 3 starting distance error %19.48
unfolding complete - removing small folds...
starting distance error %19.34
removing remaining folds...
final distance error %19.37
MRISunfold() return, current seed 1234
writing spherical brain to ../surf/lh.sphere
spherical transformation took 0.64 hours
#--------------------------------------------
#@# Surf Reg lh Wed Jul 27 00:54:03 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_register -curv ../surf/lh.sphere /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg

using smoothwm curvature for final alignment
$Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading surface from ../surf/lh.sphere...
reading template parameterization from /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif...
MRISregister() -------
max_passes = 4
min_degrees = 0.500000
max_degrees = 64.000000
nangles = 8
tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
using quadratic fit line minimization
complete_dist_mat 0
rms 0
smooth_averages 0
remove_neg 0
ico_order 0
which_surface 0
target_radius 0.000000
nfields 0
scale 0.000000
desired_rms_height -1.000000
momentum 0.950000
nbhd_size -10
max_nbrs 10
niterations 25
nsurfaces 0
SURFACES 3
flags 16 (10)
use curv 16
no sulc 0
no rigid align 0
mris->nsize 1
mris->hemisphere 0
randomSeed 0

tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
using quadratic fit line minimization
--------------------
1 Reading lh.sulc
curvature mean = -0.000, std = 0.598
curvature mean = 0.016, std = 0.930
curvature mean = 0.023, std = 0.883
Starting MRISrigidBodyAlignGlobal()
  d=64.00 min @ (16.00, 0.00, 0.00) sse = 309024.6, tmin=0.7001
  d=32.00 min @ (-8.00, -8.00, 8.00) sse = 238861.4, tmin=1.4033
  d=16.00 min @ (0.00, 0.00, -4.00) sse = 235516.4, tmin=2.1131
  d=8.00 min @ (-2.00, 2.00, 2.00) sse = 226895.2, tmin=2.8276
  d=2.00 min @ (0.50, -0.50, 0.00) sse = 226563.6, tmin=4.2752
  d=1.00 min @ (-0.25, 0.00, 0.00) sse = 226525.3, tmin=5.0023
  d=0.50 min @ (0.12, 0.12, 0.00) sse = 226516.7, tmin=5.7378
tol=1.0e+00, sigma=0.5, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
using quadratic fit line minimization
MRISrigidBodyAlignGlobal() done   5.74 min
curvature mean = -0.020, std = 0.956
curvature mean = 0.009, std = 0.953
curvature mean = -0.021, std = 0.968
curvature mean = 0.003, std = 0.979
curvature mean = -0.022, std = 0.971
curvature mean = 0.001, std = 0.991
2 Reading smoothwm
curvature mean = -0.044, std = 0.398
curvature mean = 0.001, std = 0.067
curvature mean = 0.062, std = 0.266
curvature mean = 0.001, std = 0.080
curvature mean = 0.040, std = 0.391
curvature mean = 0.001, std = 0.087
curvature mean = 0.027, std = 0.491
curvature mean = 0.001, std = 0.089
curvature mean = 0.010, std = 0.594
MRISregister() return, current seed 0
writing registered surface to ../surf/lh.sphere.reg...
expanding nbhd size to 1
#--------------------------------------------
#@# Jacobian white lh Wed Jul 27 01:12:55 EDT 2016

 mris_jacobian ../surf/lh.white ../surf/lh.sphere.reg ../surf/lh.jacobian_white

reading surface from ../surf/lh.white...
writing curvature file ../surf/lh.jacobian_white
#--------------------------------------------
#@# AvgCurv lh Wed Jul 27 01:12:56 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mrisp_paint -a 5 /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv

averaging curvature patterns 5 times...
reading surface from ../surf/lh.sphere.reg...
reading template parameterization from /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif...
writing curvature file to ../surf/lh.avg_curv...
#-----------------------------------------
#@# Cortical Parc lh Wed Jul 27 01:12:58 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg lh ../surf/lh.sphere.reg /usr/local/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/lh.aparc.annot

setting seed for random number generator to 1234
using ../mri/aseg.mgz aseg volume to correct midline
$Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading atlas from /usr/local/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs...
reading color table from GCSA file....
average std = 1.0   using min determinant for regularization = 0.011
0 singular and 384 ill-conditioned covariance matrices regularized
input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
labeling surface...
1010 labels changed using aseg
relabeling using gibbs priors...
000:   2616 changed, 120687 examined...
001:    652 changed, 11165 examined...
002:    148 changed, 3509 examined...
003:     45 changed, 893 examined...
004:     10 changed, 271 examined...
005:      0 changed, 63 examined...
191 labels changed using aseg
000: 92 total segments, 53 labels (307 vertices) changed
001: 43 total segments, 4 labels (4 vertices) changed
002: 39 total segments, 0 labels (0 vertices) changed
10 filter iterations complete (10 requested, 42 changed)
rationalizing unknown annotations with cortex label
relabeling unknown label...
relabeling corpuscallosum label...
2134 vertices marked for relabeling...
2134 labels changed in reclassification.
writing output to ../label/lh.aparc.annot...
classification took 0 minutes and 31 seconds.
#--------------------------------------------
#@# Make Pial Surf lh Wed Jul 27 01:13:29 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs jmcoreg lh

-white NOWRITE indicates that white, curv, area, and cortex.label files will not be written...
INFO: assuming MGZ format for volumes.
using brain.finalsurfs as T1 volume...
$Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $
$Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/filled.mgz...
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/brain.finalsurfs.mgz...
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
10320 bright wm thresholded.
12527 bright non-wm voxels segmented.
reading original surface position from /usr/local/freesurfer/subjects/jmcoreg/surf/lh.orig...
computing class statistics...
border white:    261039 voxels (1.56%)
border gray      319152 voxels (1.90%)
WM (96.0): 96.1 +- 6.5 [70.0 --> 110.0]
GM (87.0) : 84.7 +- 11.3 [30.0 --> 110.0]
setting MIN_GRAY_AT_WHITE_BORDER to 70.7 (was 70)
setting MAX_BORDER_WHITE to 106.5 (was 105)
setting MIN_BORDER_WHITE to 82.0 (was 85)
setting MAX_CSF to 59.5 (was 40)
setting MAX_GRAY to 93.5 (was 95)
setting MAX_GRAY_AT_CSF_BORDER to 76.4 (was 75)
setting MIN_GRAY_AT_CSF_BORDER to 48.2 (was 40)
smoothing contralateral hemisphere...
using class modes intead of means, discounting robust sigmas....
intensity peaks found at WM=100,    GM=82
mean inside = 94.2, mean outside = 85.2
smoothing surface for 5 iterations...
reading colortable from annotation file...
colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
repositioning cortical surface to gray/white boundary
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.mgz...
smoothing T1 volume with sigma = 2.000
vertex spacing 0.79 +- 0.26 (0.01-->5.79) (max @ vno 116923 --> 116925)
face area 0.26 +- 0.15 (0.00-->5.68)
mean absolute distance = 1.06 +- 1.37
5027 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
inhibiting deformation at non-cortical midline structures...
deleting segment 7 with 589 points - only 0.00% unknown
removing 4 vertex label from ripped group
deleting segment 9 with 4 points - only 0.00% unknown
mean border=89.3, 1129 (1129) missing vertices, mean dist -0.1 [1.3 (%44.3)->0.9 (%55.7))]
%53 local maxima, %41 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=2.0, host=xubun, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
complete_dist_mat 0
rms 0
smooth_averages 0
remove_neg 0
ico_order 0
which_surface 0
target_radius 0.000000
nfields 0
scale 0.000000
desired_rms_height 0.000000
momentum 0.000000
nbhd_size 0
max_nbrs 0
niterations 25
nsurfaces 0
SURFACES 3
flags 0 (0)
use curv 0
no sulc 0
no rigid align 0
mris->nsize 2
mris->hemisphere 0
randomSeed 0

smoothing T1 volume with sigma = 1.000
vertex spacing 0.88 +- 0.30 (0.05-->5.89) (max @ vno 116925 --> 117806)
face area 0.26 +- 0.16 (0.00-->6.22)
mean absolute distance = 0.54 +- 0.94
4482 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=5115117.5, rms=9.70
001: dt: 0.5000, sse=5043129.5, rms=8.168 (0.000%)
002: dt: 0.5000, sse=5035043.0, rms=7.032 (0.000%)
003: dt: 0.5000, sse=5005663.0, rms=6.195 (0.000%)
004: dt: 0.5000, sse=4916541.0, rms=5.557 (0.000%)
005: dt: 0.5000, sse=4834534.0, rms=5.052 (0.000%)
006: dt: 0.5000, sse=4726011.5, rms=4.718 (0.000%)
007: dt: 0.5000, sse=4670479.5, rms=4.464 (0.000%)
008: dt: 0.5000, sse=4627771.5, rms=4.272 (0.000%)
009: dt: 0.5000, sse=4573407.5, rms=4.050 (0.000%)
010: dt: 0.5000, sse=4535398.5, rms=3.862 (0.000%)
011: dt: 0.5000, sse=4495507.0, rms=3.611 (0.000%)
012: dt: 0.5000, sse=4441035.5, rms=3.440 (0.000%)
013: dt: 0.5000, sse=4428851.5, rms=3.273 (0.000%)
014: dt: 0.5000, sse=4420738.0, rms=3.072 (0.000%)
015: dt: 0.5000, sse=4417534.0, rms=2.938 (0.000%)
016: dt: 0.5000, sse=4370500.5, rms=2.774 (0.000%)
017: dt: 0.5000, sse=4366320.0, rms=2.700 (0.000%)
018: dt: 0.5000, sse=4349176.5, rms=2.645 (0.000%)
019: dt: 0.5000, sse=4345766.5, rms=2.588 (0.000%)
rms = 2.55, time step reduction 1 of 3 to 0.250...
020: dt: 0.5000, sse=4333541.5, rms=2.545 (0.000%)
021: dt: 0.2500, sse=3306435.2, rms=2.270 (0.000%)
rms = 2.24, time step reduction 2 of 3 to 0.125...
022: dt: 0.2500, sse=3189141.0, rms=2.242 (0.000%)
023: dt: 0.1250, sse=3137080.2, rms=2.163 (0.000%)
rms = 2.15, time step reduction 3 of 3 to 0.062...
024: dt: 0.1250, sse=3092009.2, rms=2.149 (0.000%)
positioning took 1.9 minutes
inhibiting deformation at non-cortical midline structures...
deleting segment 4 with 11 points - only 0.00% unknown
removing 4 vertex label from ripped group
deleting segment 7 with 4 points - only 0.00% unknown
deleting segment 9 with 476 points - only 0.00% unknown
deleting segment 14 with 80 points - only 0.00% unknown
deleting segment 17 with 35 points - only 0.00% unknown
removing 2 vertex label from ripped group
deleting segment 18 with 2 points - only 0.00% unknown
mean border=90.5, 1166 (488) missing vertices, mean dist -0.2 [0.7 (%58.5)->0.4 (%41.5))]
%60 local maxima, %32 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=1.0, host=xubun, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.500
vertex spacing 0.88 +- 0.30 (0.03-->5.96) (max @ vno 116925 --> 117806)
face area 0.32 +- 0.19 (0.00-->7.28)
mean absolute distance = 0.43 +- 0.65
3805 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3308136.0, rms=3.28
025: dt: 0.5000, sse=3588277.2, rms=2.562 (0.000%)
026: dt: 0.5000, sse=3821017.8, rms=2.264 (0.000%)
027: dt: 0.5000, sse=3830241.0, rms=2.187 (0.000%)
028: dt: 0.5000, sse=3874186.5, rms=2.058 (0.000%)
rms = 2.09, time step reduction 1 of 3 to 0.250...
029: dt: 0.2500, sse=3532309.8, rms=1.913 (0.000%)
030: dt: 0.2500, sse=3417968.0, rms=1.858 (0.000%)
rms = 1.86, time step reduction 2 of 3 to 0.125...
rms = 1.83, time step reduction 3 of 3 to 0.062...
031: dt: 0.1250, sse=3372240.2, rms=1.827 (0.000%)
positioning took 0.7 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
deleting segment 1 with 577 points - only 0.00% unknown
deleting segment 2 with 26 points - only 0.00% unknown
removing 2 vertex label from ripped group
deleting segment 3 with 2 points - only 0.00% unknown
deleting segment 4 with 11 points - only 0.00% unknown
removing 3 vertex label from ripped group
deleting segment 5 with 3 points - only 0.00% unknown
mean border=91.7, 1274 (411) missing vertices, mean dist -0.2 [0.5 (%60.4)->0.3 (%39.6))]
%71 local maxima, %21 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=0.5, host=xubun, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.250
vertex spacing 0.88 +- 0.30 (0.05-->5.95) (max @ vno 116925 --> 117806)
face area 0.32 +- 0.20 (0.00-->7.44)
mean absolute distance = 0.37 +- 0.52
3142 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3460081.0, rms=2.68
032: dt: 0.5000, sse=3728257.8, rms=2.102 (0.000%)
033: dt: 0.5000, sse=3933184.5, rms=1.912 (0.000%)
rms = 1.96, time step reduction 1 of 3 to 0.250...
034: dt: 0.2500, sse=3680735.8, rms=1.770 (0.000%)
rms = 1.76, time step reduction 2 of 3 to 0.125...
035: dt: 0.2500, sse=3605647.5, rms=1.765 (0.000%)
rms = 1.72, time step reduction 3 of 3 to 0.062...
036: dt: 0.1250, sse=3563143.8, rms=1.716 (0.000%)
positioning took 0.4 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
deleting segment 2 with 447 points - only 0.00% unknown
removing 4 vertex label from ripped group
deleting segment 4 with 87 points - only 0.00% unknown
deleting segment 5 with 15 points - only 0.00% unknown
deleting segment 6 with 19 points - only 0.00% unknown
removing 3 vertex label from ripped group
deleting segment 7 with 3 points - only 0.00% unknown
mean border=92.3, 1375 (371) missing vertices, mean dist -0.1 [0.4 (%55.1)->0.3 (%44.9))]
%78 local maxima, %15 large gradients and % 1 min vals, 0 gradients ignored
tol=1.0e-04, sigma=0.2, host=xubun, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
repositioning cortical surface to gray/csf boundary.
smoothing T1 volume with sigma = 2.000
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3584763.0, rms=2.02
037: dt: 0.5000, sse=4294641.5, rms=1.905 (0.000%)
038: dt: 0.5000, sse=4083926.2, rms=1.780 (0.000%)
rms = 1.91, time step reduction 1 of 3 to 0.250...
039: dt: 0.2500, sse=3965286.5, rms=1.599 (0.000%)
rms = 1.63, time step reduction 2 of 3 to 0.125...
rms = 1.56, time step reduction 3 of 3 to 0.062...
040: dt: 0.1250, sse=3938828.5, rms=1.562 (0.000%)
positioning took 0.4 minutes
inhibiting deformation at non-cortical midline structures...
removing 2 vertex label from ripped group
smoothing surface for 5 iterations...
mean border=70.7, 1163 (1163) missing vertices, mean dist 1.8 [1.1 (%0.1)->2.9 (%99.9))]
%28 local maxima, %28 large gradients and %37 min vals, 2183 gradients ignored
tol=1.0e-04, sigma=2.0, host=xubun, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 1.000
averaging target values for 5 iterations...
000: dt: 0.0000, sse=13909900.0, rms=22.91
001: dt: 0.5000, sse=11804993.0, rms=20.710 (0.000%)
002: dt: 0.5000, sse=10072373.0, rms=18.687 (0.000%)
003: dt: 0.5000, sse=8672673.0, rms=16.839 (0.000%)
004: dt: 0.5000, sse=7654502.0, rms=15.146 (0.000%)
005: dt: 0.5000, sse=6949407.0, rms=13.624 (0.000%)
006: dt: 0.5000, sse=6542484.0, rms=12.261 (0.000%)
007: dt: 0.5000, sse=6263513.0, rms=11.026 (0.000%)
008: dt: 0.5000, sse=6068805.5, rms=9.899 (0.000%)
009: dt: 0.5000, sse=6029578.5, rms=8.890 (0.000%)
010: dt: 0.5000, sse=6031178.0, rms=8.019 (0.000%)
011: dt: 0.5000, sse=6124592.0, rms=7.286 (0.000%)
012: dt: 0.5000, sse=6227588.0, rms=6.712 (0.000%)
013: dt: 0.5000, sse=6339505.0, rms=6.270 (0.000%)
014: dt: 0.5000, sse=6419277.0, rms=5.945 (0.000%)
015: dt: 0.5000, sse=6502635.5, rms=5.718 (0.000%)
016: dt: 0.5000, sse=6543841.0, rms=5.556 (0.000%)
017: dt: 0.5000, sse=6594027.5, rms=5.420 (0.000%)
018: dt: 0.5000, sse=6542726.0, rms=5.327 (0.000%)
019: dt: 0.5000, sse=6600043.5, rms=5.262 (0.000%)
020: dt: 0.5000, sse=6581689.0, rms=5.188 (0.000%)
rms = 5.15, time step reduction 1 of 3 to 0.250...
021: dt: 0.5000, sse=6604499.5, rms=5.146 (0.000%)
022: dt: 0.2500, sse=4982653.0, rms=4.620 (0.000%)
023: dt: 0.2500, sse=4796964.0, rms=4.465 (0.000%)
rms = 4.47, time step reduction 2 of 3 to 0.125...
024: dt: 0.1250, sse=4680084.0, rms=4.386 (0.000%)
025: dt: 0.1250, sse=4483556.0, rms=4.280 (0.000%)
rms = 4.24, time step reduction 3 of 3 to 0.062...
026: dt: 0.1250, sse=4406296.5, rms=4.242 (0.000%)
positioning took 2.1 minutes
mean border=67.8, 4265 (371) missing vertices, mean dist 0.3 [0.3 (%29.2)->0.7 (%70.8))]
%41 local maxima, %21 large gradients and %28 min vals, 1503 gradients ignored
tol=1.0e-04, sigma=1.0, host=xubun, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.500
averaging target values for 5 iterations...
000: dt: 0.0000, sse=5051847.5, rms=6.26
027: dt: 0.5000, sse=5193301.0, rms=5.606 (0.000%)
028: dt: 0.5000, sse=6211112.5, rms=5.338 (0.000%)
rms = 5.44, time step reduction 1 of 3 to 0.250...
029: dt: 0.2500, sse=5411578.5, rms=4.812 (0.000%)
030: dt: 0.2500, sse=5101471.5, rms=4.689 (0.000%)
rms = 4.76, time step reduction 2 of 3 to 0.125...
031: dt: 0.1250, sse=4999625.5, rms=4.612 (0.000%)
032: dt: 0.1250, sse=4861018.0, rms=4.524 (0.000%)
rms = 4.49, time step reduction 3 of 3 to 0.062...
033: dt: 0.1250, sse=4841829.0, rms=4.492 (0.000%)
positioning took 0.7 minutes
mean border=66.7, 5589 (301) missing vertices, mean dist 0.2 [0.3 (%31.6)->0.5 (%68.4))]
%47 local maxima, %15 large gradients and %28 min vals, 1372 gradients ignored
tol=1.0e-04, sigma=0.5, host=xubun, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.250
averaging target values for 5 iterations...
000: dt: 0.0000, sse=4940906.5, rms=4.92
rms = 5.29, time step reduction 1 of 3 to 0.250...
034: dt: 0.2500, sse=4822008.0, rms=4.693 (0.000%)
rms = 4.66, time step reduction 2 of 3 to 0.125...
035: dt: 0.2500, sse=4945381.0, rms=4.659 (0.000%)
036: dt: 0.1250, sse=4873314.5, rms=4.561 (0.000%)
037: dt: 0.1250, sse=4882223.5, rms=4.508 (0.000%)
rms = 4.49, time step reduction 3 of 3 to 0.062...
038: dt: 0.1250, sse=4916943.0, rms=4.490 (0.000%)
positioning took 0.5 minutes
mean border=66.0, 8684 (281) missing vertices, mean dist 0.1 [0.3 (%38.1)->0.4 (%61.9))]
%50 local maxima, %11 large gradients and %26 min vals, 1313 gradients ignored
tol=1.0e-04, sigma=0.2, host=xubun, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
writing pial surface to /usr/local/freesurfer/subjects/jmcoreg/surf/lh.pial...
writing smoothed curvature to lh.curv.pial
000: dt: 0.0000, sse=4941206.5, rms=4.60
rms = 4.90, time step reduction 1 of 3 to 0.250...
039: dt: 0.2500, sse=4940399.5, rms=4.466 (0.000%)
040: dt: 0.2500, sse=5284577.0, rms=4.396 (0.000%)
rms = 4.42, time step reduction 2 of 3 to 0.125...
041: dt: 0.1250, sse=5227857.5, rms=4.336 (0.000%)
042: dt: 0.1250, sse=5212457.0, rms=4.256 (0.000%)
043: dt: 0.1250, sse=5273343.0, rms=4.182 (0.000%)
rms = 4.14, time step reduction 3 of 3 to 0.062...
044: dt: 0.1250, sse=5324870.5, rms=4.143 (0.000%)
positioning took 0.6 minutes
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.curv.pial
writing smoothed area to lh.area.pial
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.area.pial
vertex spacing 0.96 +- 0.46 (0.01-->10.11) (max @ vno 116343 --> 116344)
face area 0.36 +- 0.32 (0.00-->7.34)
measuring cortical thickness...
writing cortical thickness estimate to 'thickness' file.
0 of 120687 vertices processed
25000 of 120687 vertices processed
50000 of 120687 vertices processed
75000 of 120687 vertices processed
100000 of 120687 vertices processed
0 of 120687 vertices processed
25000 of 120687 vertices processed
50000 of 120687 vertices processed
75000 of 120687 vertices processed
100000 of 120687 vertices processed
thickness calculation complete, 1449:2870 truncations.
24188 vertices at 0 distance
69589 vertices at 1 distance
65959 vertices at 2 distance
36536 vertices at 3 distance
17188 vertices at 4 distance
7450 vertices at 5 distance
3361 vertices at 6 distance
1498 vertices at 7 distance
732 vertices at 8 distance
425 vertices at 9 distance
225 vertices at 10 distance
136 vertices at 11 distance
84 vertices at 12 distance
67 vertices at 13 distance
51 vertices at 14 distance
45 vertices at 15 distance
35 vertices at 16 distance
38 vertices at 17 distance
26 vertices at 18 distance
14 vertices at 19 distance
29 vertices at 20 distance
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.thickness
positioning took 9.8 minutes
#--------------------------------------------
#@# Surf Volume lh Wed Jul 27 01:23:17 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/surf

 mris_calc -o lh.area.mid lh.area add lh.area.pial

Saving result to 'lh.area.mid' (type = MRI_CURV_FILE)                       [ ok ]

 mris_calc -o lh.area.mid lh.area.mid div 2

Saving result to 'lh.area.mid' (type = MRI_CURV_FILE)                       [ ok ]

 mris_calc -o lh.volume lh.area.mid mul lh.thickness

Saving result to 'lh.volume' (type = MRI_CURV_FILE)                       [ ok ]
#-----------------------------------------
#@# WM/GM Contrast lh Wed Jul 27 01:23:17 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 pctsurfcon --s jmcoreg --lh-only

Log file is /usr/local/freesurfer/subjects/jmcoreg/scripts/pctsurfcon.log
Wed Jul 27 01:23:17 EDT 2016
setenv SUBJECTS_DIR /usr/local/freesurfer/subjects
cd /usr/local/freesurfer/subjects/jmcoreg/scripts
/usr/local/freesurfer/bin/pctsurfcon
$Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $
Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux
FREESURFER_HOME /usr/local/freesurfer
mri_vol2surf --mov /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.wm.mgh --regheader jmcoreg --cortex
srcvol = /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz
srcreg unspecified
srcregold = 0
srcwarp unspecified
surf = white
hemi = lh
ProjDist = -1
reshape = 0
interp = trilinear
float2int = round
GetProjMax = 0
INFO: float2int code = 0
INFO: changing type to float
Done loading volume
Computing registration from header.
  Using /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz as target reference.
Loading label /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label
Reading surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white
Done reading source surface
Mapping Source Volume onto Source Subject Surface
 1 -1 -1 -1
using old
Done mapping volume to surface
Number of source voxels hit = 100191
Masking with /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label
Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.wm.mgh
Dim: 120687 1 1
mri_vol2surf --mov /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.gm.mgh --projfrac 0.3 --regheader jmcoreg --cortex
srcvol = /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz
srcreg unspecified
srcregold = 0
srcwarp unspecified
surf = white
hemi = lh
ProjFrac = 0.3
thickness = thickness
reshape = 0
interp = trilinear
float2int = round
GetProjMax = 0
INFO: float2int code = 0
INFO: changing type to float
Done loading volume
Computing registration from header.
  Using /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz as target reference.
Loading label /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label
Reading surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white
Done reading source surface
Reading thickness /usr/local/freesurfer/subjects/jmcoreg/surf/lh.thickness
Done
Mapping Source Volume onto Source Subject Surface
 1 0.3 0.3 0.3
using old
Done mapping volume to surface
Number of source voxels hit = 111003
Masking with /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label
Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.gm.mgh
Dim: 120687 1 1
mri_concat /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.wm.mgh /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.gm.mgh --paired-diff-norm --mul 100 --o /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh
ninputs = 2
Checking inputs
nframestot = 2
Allocing output
Done allocing
Combining pairs
nframes = 1
Multiplying by 100.000000
Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh
mri_segstats --in /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh --annot jmcoreg lh aparc --sum /usr/local/freesurfer/subjects/jmcoreg/stats/lh.w-g.pct.stats --snr

$Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
cwd
cmdline mri_segstats --in /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh --annot jmcoreg lh aparc --sum /usr/local/freesurfer/subjects/jmcoreg/stats/lh.w-g.pct.stats --snr
sysname  Linux
hostname xubuntu-VirtualBox
machine  i686
user     fsuser
UseRobust  0
Constructing seg from annotation

Reading annotation
reading colortable from annotation file...
colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Seg base 1000
Loading /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh
Vertex Area is 0.635095 mm^3
Generating list of segmentation ids
Found  36 segmentations
Computing statistics for each segmentation
  0   1000                            unknown       0       0.000
  1   1001                           bankssts    1194     833.862
  2   1002            caudalanteriorcingulate     746     460.153
  3   1003                caudalmiddlefrontal    3035    1989.299
  4   1004                     corpuscallosum       0       0.000
  5   1005                             cuneus     712     439.035
  6   1006                         entorhinal     459     265.383
  7   1007                           fusiform    3844    2279.706
  8   1008                   inferiorparietal    6643    4196.290
  9   1009                   inferiortemporal    3435    2159.567
 10   1010                   isthmuscingulate    1751    1103.834
 11   1011                   lateraloccipital    6757    4288.504
 12   1012               lateralorbitofrontal    3225    2093.172
 13   1013                            lingual    4977    2889.833
 14   1014                medialorbitofrontal    3032    1882.589
 15   1015                     middletemporal    3361    2231.082
 16   1016                    parahippocampal    1211     613.873
 17   1017                        paracentral    3198    1921.574
 18   1018                    parsopercularis    2008    1317.328
 19   1019                      parsorbitalis     698     489.473
 20   1020                   parstriangularis    1985    1289.350
 21   1021                      pericalcarine    1118     850.332
 22   1022                        postcentral    5158    3198.469
 23   1023                 posteriorcingulate    1378     868.907
 24   1024                         precentral    7139    4490.778
 25   1025                          precuneus    5028    3279.814
 26   1026           rostralanteriorcingulate    1018     637.938
 27   1027               rostralmiddlefrontal    6938    4488.553
 28   1028                    superiorfrontal   10150    6576.878
 29   1029                   superiorparietal    6277    4031.693
 30   1030                   superiortemporal    5601    3605.308
 31   1031                      supramarginal    5173    3322.959
 32   1032                        frontalpole     233     134.095
 33   1033                       temporalpole     519     369.252
 34   1034                 transversetemporal     854     527.036
 35   1035                             insula    3196    2102.828

Reporting on  34 segmentations
mri_segstats done
Cleaning up
#-----------------------------------------
#@# Parcellation Stats lh Wed Jul 27 01:23:29 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab jmcoreg lh white

computing statistics for each annotation in ../label/lh.aparc.annot.
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white...
reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.pial...
reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white...
INFO: assuming MGZ format for volumes.
INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
reading colortable from annotation file...
colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Saving annotation colortable ../label/aparc.annot.ctab

table columns are:
    number of vertices
    total surface area (mm^2)
    total gray matter volume (mm^3)
    average cortical thickness +- standard deviation (mm)
    integrated rectified mean curvature
    integrated rectified Gaussian curvature
    folding index
    intrinsic curvature index
    structure name

 1194    834   2281  2.992 0.620     0.096     0.019        5     0.9  bankssts
  746    460   1232  3.020 0.746     0.146     0.049       13     1.5  caudalanteriorcingulate
 3035   1989   5551  2.661 0.652     0.125     0.036       31     4.5  caudalmiddlefrontal
  712    439    941  1.927 0.514     0.128     0.070       14     2.0  cuneus
  459    265   1130  3.176 0.811     0.249     0.197       76     5.0  entorhinal
 3844   2280   7504  2.860 1.087     0.264     1.528     1899   144.7  fusiform
 6643   4196  10814  2.541 0.725     0.167     0.373     2091    35.3  inferiorparietal
 3435   2160   9717  3.496 0.939     0.146     0.118       86    22.0  inferiortemporal
 1751   1104   2578  2.605 0.944     0.243     0.798      461    17.5  isthmuscingulate
 6757   4288  12845  2.739 0.859     0.178     0.129      332    33.1  lateraloccipital
 3225   2093   7001  3.231 0.903     0.149     0.085       59    10.1  lateralorbitofrontal
 4977   2890   6139  2.041 0.743     0.267     0.423      895    86.9  lingual
 3032   1883   5476  2.579 0.848     0.146     0.431      191    25.5  medialorbitofrontal
 3361   2231   8744  3.119 0.756     0.131     0.088      193    16.6  middletemporal
 1211    614   1531  2.372 0.824     0.254     0.765      784    26.8  parahippocampal
 3198   1922   4582  2.306 0.733     0.194     1.409      876    35.0  paracentral
 2008   1317   3577  2.555 0.546     0.124     0.044       30     3.9  parsopercularis
  698    489   2086  3.167 0.997     0.149     0.055        9     1.5  parsorbitalis
 1985   1289   3984  2.746 0.711     0.122     0.037       19     3.2  parstriangularis
 1118    850   1536  2.251 0.771     0.188     0.204       33    13.8  pericalcarine
 5158   3198   7538  2.140 0.778     0.118     0.052       74    12.2  postcentral
 1378    869   1975  2.545 0.703     0.168     0.220      132    10.2  posteriorcingulate
 7139   4491  10562  2.242 0.704     0.123     0.048       94    15.9  precentral
 5028   3280   6747  2.215 0.757     0.190     0.193      455    44.4  precuneus
 1018    638   1956  2.869 0.704     0.128     0.046       14     1.7  rostralanteriorcingulate
 6938   4489  12340  2.470 0.703     0.141     0.064      118    16.5  rostralmiddlefrontal
10150   6577  20365  2.799 0.669     0.134     0.114      308    57.0  superiorfrontal
 6277   4032   9878  2.364 0.619     0.126     0.082      187    18.9  superiorparietal
 5601   3605  11672  2.760 0.769     0.128     0.076      139    18.6  superiortemporal
 5173   3323  10215  2.854 0.681     0.145     0.074      128    17.3  supramarginal
  233    134    586  2.760 0.563     0.160     0.057        4     0.6  frontalpole
  519    369   2871  4.166 0.808     0.158     0.066        8     1.6  temporalpole
  854    527    965  1.714 0.507     0.234     0.227       94     9.0  transversetemporal
 3196   2103   6801  3.092 0.984     0.187     0.234      297    33.4  insula
#-----------------------------------------
#@# Cortical Parc 2 lh Wed Jul 27 01:23:39 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg lh ../surf/lh.sphere.reg /usr/local/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs ../label/lh.aparc.a2009s.annot

setting seed for random number generator to 1234
using ../mri/aseg.mgz aseg volume to correct midline
$Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading atlas from /usr/local/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs...
reading color table from GCSA file....
average std = 3.9 0.2   using min determinant for regularization = 0.000
0 singular and 1066 ill-conditioned covariance matrices regularized
input 1: CURVATURE FILE, flags 0, avgs 0, name sulc
input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
labeling surface...
194 labels changed using aseg
relabeling using gibbs priors...
000:   7979 changed, 120687 examined...
001:   1918 changed, 30690 examined...
002:    560 changed, 9885 examined...
003:    249 changed, 3152 examined...
004:    131 changed, 1394 examined...
005:     63 changed, 693 examined...
006:     28 changed, 333 examined...
007:     17 changed, 163 examined...
008:      6 changed, 105 examined...
009:      2 changed, 43 examined...
010:      2 changed, 14 examined...
011:      2 changed, 10 examined...
012:      1 changed, 12 examined...
013:      0 changed, 5 examined...
20 labels changed using aseg
000: 260 total segments, 175 labels (1563 vertices) changed
001: 92 total segments, 7 labels (34 vertices) changed
002: 85 total segments, 0 labels (0 vertices) changed
10 filter iterations complete (10 requested, 138 changed)
rationalizing unknown annotations with cortex label
relabeling Medial_wall label...
1667 vertices marked for relabeling...
1667 labels changed in reclassification.
writing output to ../label/lh.aparc.a2009s.annot...
classification took 0 minutes and 36 seconds.
#-----------------------------------------
#@# Parcellation Stats 2 lh Wed Jul 27 01:24:15 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab jmcoreg lh white

computing statistics for each annotation in ../label/lh.aparc.a2009s.annot.
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white...
reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.pial...
reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white...
INFO: assuming MGZ format for volumes.
INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
reading colortable from annotation file...
colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt)
Saving annotation colortable ../label/aparc.annot.a2009s.ctab

table columns are:
    number of vertices
    total surface area (mm^2)
    total gray matter volume (mm^3)
    average cortical thickness +- standard deviation (mm)
    integrated rectified mean curvature
    integrated rectified Gaussian curvature
    folding index
    intrinsic curvature index
    structure name

 1035    666   2031  2.566 0.878     0.135     0.059       18     2.5  G_and_S_frontomargin
 1618   1032   4268  3.397 0.815     0.175     0.164       70     6.9  G_and_S_occipital_inf
 2331   1232   3122  2.130 0.681     0.177     0.335      164    19.9  G_and_S_paracentral
 1028    656   2055  2.821 0.652     0.143     0.066       21     2.9  G_and_S_subcentral
  495    304   1103  2.536 0.605     0.163     0.057       10     1.4  G_and_S_transv_frontopol
 1840   1237   3341  2.669 0.648     0.137     0.063       47     4.8  G_and_S_cingul-Ant
 1349    867   2531  3.107 0.779     0.155     0.069       23     3.9  G_and_S_cingul-Mid-Ant
 1097    814   1772  2.539 0.585     0.183     0.224       37    15.1  G_and_S_cingul-Mid-Post
  354    224    723  2.910 0.642     0.176     0.112        8     1.4  G_cingul-Post-dorsal
  712    471    870  2.081 0.741     0.293     1.484      188     6.1  G_cingul-Post-ventral
  648    391    905  1.964 0.478     0.131     0.060        8     1.6  G_cuneus
 1248    759   2658  2.613 0.632     0.141     0.061       23     3.3  G_front_inf-Opercular
  212    140    707  3.502 0.766     0.148     0.062        3     0.5  G_front_inf-Orbital
 1383    867   3026  2.674 0.635     0.131     0.041       16     2.4  G_front_inf-Triangul
 3846   2382   7584  2.581 0.583     0.142     0.058       61     9.3  G_front_middle
 7353   4584  15386  2.790 0.695     0.150     0.621      964    54.3  G_front_sup
  549    299   1261  3.034 1.011     0.188     0.289       56     5.4  G_Ins_lg_and_S_cent_ins
  829    471   2030  2.982 1.196     0.259     0.486      203    21.2  G_insular_short
 2496   1456   4852  2.657 0.862     0.212     0.179      536    19.0  G_occipital_middle
  936    558   1500  2.183 0.671     0.148     0.172       46     3.9  G_occipital_sup
 1616    917   3258  2.589 1.046     0.282     1.538      577    84.3  G_oc-temp_lat-fusifor
 3957   2208   4957  2.042 0.747     0.256     0.393      664    68.7  G_oc-temp_med-Lingual
 1395    782   2721  2.688 0.914     0.216     0.233      112    13.4  G_oc-temp_med-Parahip
 2078   1341   5404  3.079 0.941     0.166     0.110       50     8.3  G_orbital
 2664   1601   5100  2.696 0.763     0.173     0.172      182    17.6  G_pariet_inf-Angular
 2991   1836   6393  2.872 0.703     0.155     0.100      106    13.9  G_pariet_inf-Supramar
 2115   1283   3762  2.360 0.554     0.141     0.124      122    11.0  G_parietal_sup
 1895   1079   3045  2.222 0.744     0.119     0.063       26     6.0  G_postcentral
 2695   1492   4537  2.371 0.640     0.119     0.056       40     6.9  G_precentral
 2586   1670   3598  2.076 0.728     0.205     0.199      206    24.6  G_precuneus
 1267    757   2721  2.555 0.750     0.146     0.133       36     7.3  G_rectus
  563    319    877  2.779 0.900     0.184     1.867      131    14.7  G_subcallosal
  590    333    721  1.775 0.580     0.236     0.277       82     7.6  G_temp_sup-G_T_transv
 2026   1301   5725  2.954 0.764     0.145     0.083       41     7.6  G_temp_sup-Lateral
  606    372   1188  2.515 0.881     0.154     0.217       29     5.3  G_temp_sup-Plan_polar
  888    572   2044  3.010 0.671     0.129     0.050       37     2.1  G_temp_sup-Plan_tempo
 2202   1353   7596  3.673 0.944     0.167     0.167       78    20.4  G_temporal_inf
 2175   1387   6273  3.152 0.762     0.147     0.124      186    15.5  G_temporal_middle
  330    216    638  3.306 0.497     0.121     0.043        3     0.6  Lat_Fis-ant-Horizont
  276    194    387  2.308 0.473     0.087     0.014        1     0.2  Lat_Fis-ant-Vertical
 1155    852   1646  2.394 0.753     0.166     0.077       22     3.9  Lat_Fis-post
 2199   1315   3089  2.168 0.727     0.198     0.163      119    15.5  Pole_occipital
 1110    743   4461  3.634 1.003     0.174     0.117       55     5.8  Pole_temporal
 1888   1356   2536  2.240 0.726     0.231     0.331      359    31.8  S_calcarine
 2998   2109   2969  1.590 0.481     0.125     0.036       29     4.8  S_central
 1214    806   1869  2.978 0.705     0.137     0.233      130     9.4  S_cingul-Marginalis
  384    257    719  3.359 0.569     0.118     0.049        3     0.8  S_circular_insula_ant
 1497    985   2400  2.845 0.999     0.105     0.050       24     2.8  S_circular_insula_inf
 1430   1009   2446  2.940 0.611     0.128     0.069       21     3.6  S_circular_insula_sup
  727    507   1456  3.067 1.144     0.114     0.032        6     1.0  S_collat_transv_ant
  223    169    347  2.854 0.751     0.159     0.048        2     0.5  S_collat_transv_post
 2224   1484   3330  2.477 0.645     0.137     0.050       32     4.9  S_front_inf
  928    619   1518  2.172 0.737     0.140     0.057       23     2.1  S_front_middle
 2915   1994   4603  2.512 0.564     0.102     0.023       17     2.7  S_front_sup
  163    107    414  3.374 0.496     0.141     0.037        2     0.3  S_interm_prim-Jensen
 2838   1932   4109  2.527 0.642     0.107     0.028       18     3.4  S_intrapariet_and_P_trans
  725    516   1128  2.617 0.597     0.163     0.063       27     2.0  S_oc_middle_and_Lunatus
 1335    961   1813  2.290 0.555     0.154     1.243     1470     2.2  S_oc_sup_and_transversal
  789    530   1400  3.163 0.668     0.131     0.046        8     1.5  S_occipital_ant
  500    270    843  3.821 0.866     0.123     0.094       22     2.4  S_oc-temp_lat
 1608    913   1813  2.307 0.857     0.415     2.757     2222    86.8  S_oc-temp_med_and_Lingual
  363    252    460  1.890 0.455     0.136     0.211        9     1.1  S_orbital_lateral
  830    547   1405  2.660 1.028     0.153     0.107       25     3.7  S_orbital_med-olfact
 1160    757   2380  3.506 0.994     0.124     0.048       12     2.3  S_orbital-H_Shaped
 1146    777   1451  2.110 0.603     0.141     0.062       15     3.2  S_parieto_occipital
  985    574   1121  2.763 0.946     0.176     0.186      112     3.0  S_pericallosal
 2382   1604   3567  2.556 0.594     0.114     0.031       20     2.9  S_postcentral
 1200    839   1818  2.534 0.556     0.105     0.023        7     1.1  S_precentral-inf-part
 1267    907   1842  2.511 0.771     0.106     0.021        6     1.2  S_precentral-sup-part
  503    352    859  2.920 0.839     0.116     0.028        4     0.5  S_suborbital
 1205    745   1618  2.498 0.909     0.156     0.161       84     9.4  S_subparietal
  657    447   1105  3.149 0.532     0.117     0.027        4     0.9  S_temporal_inf
 4882   3321   8053  2.790 0.672     0.107     0.030       33     7.1  S_temporal_sup
  347    251    461  2.108 0.601     0.144     0.041        3     0.6  S_temporal_transverse
#-----------------------------------------
#@# Cortical Parc 3 lh Wed Jul 27 01:24:26 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg lh ../surf/lh.sphere.reg /usr/local/freesurfer/average/lh.DKTatlas40.gcs ../label/lh.aparc.DKTatlas40.annot

setting seed for random number generator to 1234
using ../mri/aseg.mgz aseg volume to correct midline
$Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading atlas from /usr/local/freesurfer/average/lh.DKTatlas40.gcs...
reading color table from GCSA file....
average std = 0.9   using min determinant for regularization = 0.007
0 singular and 293 ill-conditioned covariance matrices regularized
input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
labeling surface...
1215 labels changed using aseg
relabeling using gibbs priors...
000:   2426 changed, 120687 examined...
001:    592 changed, 10260 examined...
002:    153 changed, 3204 examined...
003:     43 changed, 873 examined...
004:     26 changed, 260 examined...
005:     13 changed, 153 examined...
006:      8 changed, 81 examined...
007:      5 changed, 47 examined...
008:      4 changed, 30 examined...
009:      1 changed, 28 examined...
010:      1 changed, 7 examined...
011:      1 changed, 6 examined...
012:      0 changed, 6 examined...
210 labels changed using aseg
000: 72 total segments, 39 labels (426 vertices) changed
001: 33 total segments, 0 labels (0 vertices) changed
10 filter iterations complete (10 requested, 54 changed)
rationalizing unknown annotations with cortex label
relabeling unknown label...
relabeling corpuscallosum label...
1279 vertices marked for relabeling...
1279 labels changed in reclassification.
writing output to ../label/lh.aparc.DKTatlas40.annot...
classification took 0 minutes and 31 seconds.
#-----------------------------------------
#@# Parcellation Stats 3 lh Wed Jul 27 01:24:57 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas40.stats -b -a ../label/lh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab jmcoreg lh white

computing statistics for each annotation in ../label/lh.aparc.DKTatlas40.annot.
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white...
reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.pial...
reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white...
INFO: assuming MGZ format for volumes.
INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
reading colortable from annotation file...
colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt)
Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab

table columns are:
    number of vertices
    total surface area (mm^2)
    total gray matter volume (mm^3)
    average cortical thickness +- standard deviation (mm)
    integrated rectified mean curvature
    integrated rectified Gaussian curvature
    folding index
    intrinsic curvature index
    structure name

 1425    899   2642  3.049 0.714     0.161     0.092       51     5.9  caudalanteriorcingulate
 3053   2006   5629  2.662 0.647     0.125     0.036       31     4.5  caudalmiddlefrontal
 1190    738   1509  1.922 0.512     0.137     0.086       29     4.1  cuneus
  453    268   1107  3.098 0.817     0.217     0.151       52     3.6  entorhinal
 3657   2159   6881  2.807 1.083     0.279     1.630     1936   149.5  fusiform
 6369   4010  10400  2.509 0.716     0.170     0.387     2090    35.1  inferiorparietal
 3433   2139   9854  3.517 0.968     0.152     0.127      108    23.5  inferiortemporal
 1806   1149   2650  2.596 0.948     0.253     0.838      474    20.9  isthmuscingulate
 6848   4375  13142  2.742 0.855     0.178     0.128      334    33.2  lateraloccipital
 3669   2338   8105  3.153 0.998     0.153     0.103       88    15.6  lateralorbitofrontal
 4930   2858   6118  2.054 0.746     0.261     0.405      853    81.4  lingual
 2310   1469   4487  2.595 0.795     0.145     0.155       62    19.6  medialorbitofrontal
 4275   2855  10382  3.100 0.733     0.124     0.074      198    17.5  middletemporal
 1148    563   1417  2.377 0.815     0.237     0.701      773    23.2  parahippocampal
 3542   2122   5070  2.322 0.703     0.182     1.281      882    35.9  paracentral
 1741   1141   3095  2.621 0.552     0.121     0.042       26     3.4  parsopercularis
  815    566   2063  3.073 0.777     0.148     0.056       11     2.0  parsorbitalis
 2547   1646   4873  2.619 0.675     0.130     0.066       33     5.0  parstriangularis
 1132    861   1560  2.245 0.768     0.189     0.204       34    13.9  pericalcarine
 5571   3484   8187  2.157 0.774     0.120     0.052       75    12.5  postcentral
 1471    938   2101  2.567 0.694     0.169     0.210      134    10.4  posteriorcingulate
 7190   4514  10534  2.246 0.709     0.124     0.049       95    16.4  precentral
 5042   3245   6799  2.212 0.761     0.190     0.197      458    45.6  precuneus
 1457    896   2538  2.804 0.772     0.134     0.633      125     3.4  rostralanteriorcingulate
 4787   3139   8658  2.498 0.713     0.138     0.050       72     9.5  rostralmiddlefrontal
10902   7049  21644  2.733 0.680     0.133     0.104      294    56.4  superiorfrontal
 5276   3422   8429  2.398 0.604     0.122     0.080      163    14.9  superiorparietal
 7216   4718  16646  2.885 0.840     0.130     0.072      161    22.2  superiortemporal
 5128   3320  10068  2.846 0.680     0.145     0.075      127    17.3  supramarginal
  812    497    920  1.701 0.510     0.232     0.232       92     8.8  transversetemporal
 2856   1845   6213  3.154 1.005     0.186     0.247      288    31.9  insula
#--------------------------------------------
#@# Tessellate rh Wed Jul 27 01:25:07 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz


Iteration Number : 1
pass   1 (xy+):   9 found -   9 modified     |    TOTAL:   9
pass   2 (xy+):   0 found -   9 modified     |    TOTAL:   9
pass   1 (xy-):  10 found -  10 modified     |    TOTAL:  19
pass   2 (xy-):   0 found -  10 modified     |    TOTAL:  19
pass   1 (yz+):   4 found -   4 modified     |    TOTAL:  23
pass   2 (yz+):   0 found -   4 modified     |    TOTAL:  23
pass   1 (yz-):   3 found -   3 modified     |    TOTAL:  26
pass   2 (yz-):   0 found -   3 modified     |    TOTAL:  26
pass   1 (xz+):   5 found -   5 modified     |    TOTAL:  31
pass   2 (xz+):   0 found -   5 modified     |    TOTAL:  31
pass   1 (xz-):   2 found -   2 modified     |    TOTAL:  33
pass   2 (xz-):   0 found -   2 modified     |    TOTAL:  33
Iteration Number : 1
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   2 found -   2 modified     |    TOTAL:   2
pass   2 (+++):   0 found -   2 modified     |    TOTAL:   2
pass   1 (+++):   1 found -   1 modified     |    TOTAL:   3
pass   2 (+++):   0 found -   1 modified     |    TOTAL:   3
pass   1 (+++):   2 found -   2 modified     |    TOTAL:   5
pass   2 (+++):   0 found -   2 modified     |    TOTAL:   5
Iteration Number : 1
pass   1 (++):   1 found -   1 modified     |    TOTAL:   1
pass   2 (++):   0 found -   1 modified     |    TOTAL:   1
pass   1 (+-):   4 found -   4 modified     |    TOTAL:   5
pass   2 (+-):   0 found -   4 modified     |    TOTAL:   5
pass   1 (--):   2 found -   2 modified     |    TOTAL:   7
pass   2 (--):   1 found -   3 modified     |    TOTAL:   8
pass   3 (--):   0 found -   3 modified     |    TOTAL:   8
pass   1 (-+):   2 found -   2 modified     |    TOTAL:  10
pass   2 (-+):   0 found -   2 modified     |    TOTAL:  10
Iteration Number : 2
pass   1 (xy+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xy-):   1 found -   1 modified     |    TOTAL:   1
pass   2 (xy-):   0 found -   1 modified     |    TOTAL:   1
pass   1 (yz+):   0 found -   0 modified     |    TOTAL:   1
pass   1 (yz-):   0 found -   0 modified     |    TOTAL:   1
pass   1 (xz+):   0 found -   0 modified     |    TOTAL:   1
pass   1 (xz-):   0 found -   0 modified     |    TOTAL:   1
Iteration Number : 2
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 2
pass   1 (++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (--):   0 found -   0 modified     |    TOTAL:   0
pass   1 (-+):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 3
pass   1 (xy+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xy-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (yz+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (yz-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xz+):   0 found -   0 modified     |    TOTAL:   0
pass   1 (xz-):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 3
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+++):   0 found -   0 modified     |    TOTAL:   0
Iteration Number : 3
pass   1 (++):   0 found -   0 modified     |    TOTAL:   0
pass   1 (+-):   0 found -   0 modified     |    TOTAL:   0
pass   1 (--):   0 found -   0 modified     |    TOTAL:   0
pass   1 (-+):   0 found -   0 modified     |    TOTAL:   0

Total Number of Modified Voxels = 49 (out of 271435: 0.018052)
Ambiguous edge configurations...

mri_pretess done


 mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix

$Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
slice 40: 277 vertices, 322 faces
slice 50: 3444 vertices, 3635 faces
slice 60: 11958 vertices, 12350 faces
slice 70: 22584 vertices, 23064 faces
slice 80: 34634 vertices, 35134 faces
slice 90: 46465 vertices, 46997 faces
slice 100: 59054 vertices, 59647 faces
slice 110: 71802 vertices, 72446 faces
slice 120: 84006 vertices, 84627 faces
slice 130: 95815 vertices, 96447 faces
slice 140: 107111 vertices, 107716 faces
slice 150: 116416 vertices, 116996 faces
slice 160: 125009 vertices, 125536 faces
slice 170: 131795 vertices, 132319 faces
slice 180: 137560 vertices, 138053 faces
slice 190: 141387 vertices, 141778 faces
slice 200: 142294 vertices, 142592 faces
slice 210: 142294 vertices, 142592 faces
slice 220: 142294 vertices, 142592 faces
slice 230: 142294 vertices, 142592 faces
slice 240: 142294 vertices, 142592 faces
slice 250: 142294 vertices, 142592 faces
using the conformed surface RAS to save vertex points...
writing ../surf/rh.orig.nofix
using vox2ras matrix:
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;

 rm -f ../mri/filled-pretess127.mgz


 mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix


counting number of connected components...
   142282 voxel in cpt #1: X=-300 [v=142282,e=427746,f=285164] located at (21.467901, -17.615959, -6.648191)
   12 voxel in cpt #2: X=2 [v=12,e=30,f=20] located at (-4.000000, 9.500000, -14.000000)
For the whole surface: X=-298 [v=142294,e=427776,f=285184]
2 components have been found
keeping component #1 with 142282 vertices
done

#--------------------------------------------
#@# Smooth1 rh Wed Jul 27 01:25:14 EDT 2016

 mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix

/usr/local/freesurfer/subjects/jmcoreg/scripts
setting seed for random number generator to 1234
smoothing surface tessellation for 10 iterations...
smoothing complete - recomputing first and second fundamental forms...
#--------------------------------------------
#@# Inflation1 rh Wed Jul 27 01:25:17 EDT 2016

 mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix

/usr/local/freesurfer/subjects/jmcoreg/scripts
avg radius = 45.6 mm, total surface area = 71644 mm^2
writing inflated surface to ../surf/rh.inflated.nofix
inflation took 0.4 minutes
Not saving sulc
 step 000: RMS=0.125 (target=0.015)    step 005: RMS=0.095 (target=0.015)    step 010: RMS=0.084 (target=0.015)    step 015: RMS=0.077 (target=0.015)    step 020: RMS=0.074 (target=0.015)    step 025: RMS=0.072 (target=0.015)    step 030: RMS=0.069 (target=0.015)    step 035: RMS=0.068 (target=0.015)    step 040: RMS=0.068 (target=0.015)    step 045: RMS=0.066 (target=0.015)    step 050: RMS=0.066 (target=0.015)    step 055: RMS=0.066 (target=0.015)    step 060: RMS=0.066 (target=0.015)   
inflation complete.
Not saving sulc
#--------------------------------------------
#@# QSphere rh Wed Jul 27 01:25:44 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix

doing quick spherical unfolding.
setting seed for random number genererator to 1234
$Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading original vertex positions...
unfolding cortex into spherical form...
surface projected - minimizing metric distortion...
vertex spacing 0.98 +- 0.63 (0.00-->7.27) (max @ vno 42697 --> 43724)
face area 0.03 +- 0.03 (-0.22-->0.61)
scaling brain by 0.321...
inflating to sphere (rms error < 2.00)
000: dt: 0.0000, rms radial error=176.850, avgs=0
005/300: dt: 0.9000, rms radial error=176.592, avgs=0
010/300: dt: 0.9000, rms radial error=176.036, avgs=0
015/300: dt: 0.9000, rms radial error=175.307, avgs=0
020/300: dt: 0.9000, rms radial error=174.476, avgs=0
025/300: dt: 0.9000, rms radial error=173.587, avgs=0
030/300: dt: 0.9000, rms radial error=172.666, avgs=0
035/300: dt: 0.9000, rms radial error=171.727, avgs=0
040/300: dt: 0.9000, rms radial error=170.781, avgs=0
045/300: dt: 0.9000, rms radial error=169.832, avgs=0
050/300: dt: 0.9000, rms radial error=168.883, avgs=0
055/300: dt: 0.9000, rms radial error=167.937, avgs=0
060/300: dt: 0.9000, rms radial error=166.993, avgs=0
065/300: dt: 0.9000, rms radial error=166.054, avgs=0
070/300: dt: 0.9000, rms radial error=165.118, avgs=0
075/300: dt: 0.9000, rms radial error=164.188, avgs=0
080/300: dt: 0.9000, rms radial error=163.262, avgs=0
085/300: dt: 0.9000, rms radial error=162.340, avgs=0
090/300: dt: 0.9000, rms radial error=161.424, avgs=0
095/300: dt: 0.9000, rms radial error=160.512, avgs=0
100/300: dt: 0.9000, rms radial error=159.604, avgs=0
105/300: dt: 0.9000, rms radial error=158.702, avgs=0
110/300: dt: 0.9000, rms radial error=157.804, avgs=0
115/300: dt: 0.9000, rms radial error=156.912, avgs=0
120/300: dt: 0.9000, rms radial error=156.023, avgs=0
125/300: dt: 0.9000, rms radial error=155.140, avgs=0
130/300: dt: 0.9000, rms radial error=154.261, avgs=0
135/300: dt: 0.9000, rms radial error=153.387, avgs=0
140/300: dt: 0.9000, rms radial error=152.517, avgs=0
145/300: dt: 0.9000, rms radial error=151.653, avgs=0
150/300: dt: 0.9000, rms radial error=150.798, avgs=0
155/300: dt: 0.9000, rms radial error=149.948, avgs=0
160/300: dt: 0.9000, rms radial error=149.103, avgs=0
165/300: dt: 0.9000, rms radial error=148.263, avgs=0
170/300: dt: 0.9000, rms radial error=147.427, avgs=0
175/300: dt: 0.9000, rms radial error=146.595, avgs=0
180/300: dt: 0.9000, rms radial error=145.768, avgs=0
185/300: dt: 0.9000, rms radial error=144.946, avgs=0
190/300: dt: 0.9000, rms radial error=144.128, avgs=0
195/300: dt: 0.9000, rms radial error=143.315, avgs=0
200/300: dt: 0.9000, rms radial error=142.506, avgs=0
205/300: dt: 0.9000, rms radial error=141.702, avgs=0
210/300: dt: 0.9000, rms radial error=140.902, avgs=0
215/300: dt: 0.9000, rms radial error=140.107, avgs=0
220/300: dt: 0.9000, rms radial error=139.316, avgs=0
225/300: dt: 0.9000, rms radial error=138.530, avgs=0
230/300: dt: 0.9000, rms radial error=137.748, avgs=0
235/300: dt: 0.9000, rms radial error=136.970, avgs=0
240/300: dt: 0.9000, rms radial error=136.197, avgs=0
245/300: dt: 0.9000, rms radial error=135.428, avgs=0
250/300: dt: 0.9000, rms radial error=134.663, avgs=0
255/300: dt: 0.9000, rms radial error=133.903, avgs=0
260/300: dt: 0.9000, rms radial error=133.147, avgs=0
265/300: dt: 0.9000, rms radial error=132.395, avgs=0
270/300: dt: 0.9000, rms radial error=131.648, avgs=0
275/300: dt: 0.9000, rms radial error=130.905, avgs=0
280/300: dt: 0.9000, rms radial error=130.166, avgs=0
285/300: dt: 0.9000, rms radial error=129.431, avgs=0
290/300: dt: 0.9000, rms radial error=128.700, avgs=0
295/300: dt: 0.9000, rms radial error=127.974, avgs=0
300/300: dt: 0.9000, rms radial error=127.251, avgs=0

spherical inflation complete.
epoch 1 (K=10.0), pass 1, starting sse = 16691.55
taking momentum steps...
taking momentum steps...
taking momentum steps...
pass 1 complete, delta sse/iter = 0.00/10 = 0.00012
epoch 2 (K=40.0), pass 1, starting sse = 2875.98
taking momentum steps...
taking momentum steps...
taking momentum steps...
pass 1 complete, delta sse/iter = 0.00/10 = 0.00007
epoch 3 (K=160.0), pass 1, starting sse = 386.42
taking momentum steps...
taking momentum steps...
taking momentum steps...
pass 1 complete, delta sse/iter = 0.03/10 = 0.00293
epoch 4 (K=640.0), pass 1, starting sse = 70.01
taking momentum steps...
taking momentum steps...
taking momentum steps...
pass 1 complete, delta sse/iter = 0.06/11 = 0.00536
final writing spherical brain to ../surf/rh.qsphere.nofix
spherical transformation took 0.06 hours
distance error %100000.00
#--------------------------------------------
#@# Fix Topology rh Wed Jul 27 01:29:11 EDT 2016

 cp ../surf/rh.orig.nofix ../surf/rh.orig


 cp ../surf/rh.inflated.nofix ../surf/rh.inflated

/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_fix_topology -mgz -sphere qsphere.nofix -ga -seed 1234 jmcoreg rh

reading spherical homeomorphism from 'qsphere.nofix'
using genetic algorithm with optimized parameters
setting seed for random number genererator to 1234

*************************************************************
Topology Correction Parameters
retessellation mode:           genetic search
number of patches/generation : 10
number of generations :        10
surface mri loglikelihood coefficient :         1.0
volume mri loglikelihood coefficient :          10.0
normal dot loglikelihood coefficient :          1.0
quadratic curvature loglikelihood coefficient : 1.0
volume resolution :                             2
eliminate vertices during search :              1
initial patch selection :                       1
select all defect vertices :                    0
ordering dependant retessellation:              0
use precomputed edge table :                    0
smooth retessellated patch :                    2
match retessellated patch :                     1
verbose mode :                                  0

*************************************************************
INFO: assuming .mgz format
$Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
before topology correction, eno=-300 (nv=142282, nf=285164, ne=427746, g=151)
using quasi-homeomorphic spherical map to tessellate cortical surface...

Correction of the Topology
Finding true center and radius of Spherical Surface...done
Surface centered at (0,0,0) with radius 100.0 in 9 iterations
marking ambiguous vertices...
49720 ambiguous faces found in tessellation
segmenting defects...
99 defects found, arbitrating ambiguous regions...
analyzing neighboring defects...
      -merging segment 10 into 8
      -merging segment 20 into 16
      -merging segment 32 into 16
      -merging segment 61 into 56
      -merging segment 62 into 56
      -merging segment 83 into 80
      -merging segment 96 into 88
      -merging segment 91 into 88
91 defects to be corrected
0 vertices coincident
reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.qsphere.nofix...
reading brain volume from brain...
reading wm segmentation from wm...
Computing Initial Surface Statistics
      -face       loglikelihood: -8.1381  (-4.0691)
      -vertex     loglikelihood: -5.7111  (-2.8555)
      -normal dot loglikelihood: -3.6138  (-3.6138)
      -quad curv  loglikelihood: -5.9579  (-2.9790)
      Total Loglikelihood : -23.4209

CORRECTING DEFECT 0 (vertices=560, convex hull=65)
After retessellation of defect 0, euler #=-85 (114388,337060,222587) : difference with theory (-88) = -3

CORRECTING DEFECT 1 (vertices=55, convex hull=78)
After retessellation of defect 1, euler #=-84 (114405,337141,222652) : difference with theory (-87) = -3

CORRECTING DEFECT 2 (vertices=96, convex hull=86)
After retessellation of defect 2, euler #=-83 (114449,337314,222782) : difference with theory (-86) = -3

CORRECTING DEFECT 3 (vertices=265, convex hull=42)
After retessellation of defect 3, euler #=-82 (114458,337356,222816) : difference with theory (-85) = -3

CORRECTING DEFECT 4 (vertices=39, convex hull=76)
After retessellation of defect 4, euler #=-81 (114472,337428,222875) : difference with theory (-84) = -3

CORRECTING DEFECT 5 (vertices=6782, convex hull=1518)
After retessellation of defect 5, euler #=-83 (116165,343339,227091) : difference with theory (-83) = 0

CORRECTING DEFECT 6 (vertices=52, convex hull=84)
After retessellation of defect 6, euler #=-82 (116174,343401,227145) : difference with theory (-82) = 0

CORRECTING DEFECT 7 (vertices=27, convex hull=20)
After retessellation of defect 7, euler #=-81 (116179,343420,227160) : difference with theory (-81) = 0

CORRECTING DEFECT 8 (vertices=2819, convex hull=1018)
After retessellation of defect 8, euler #=-82 (117141,346878,229655) : difference with theory (-80) = 2

CORRECTING DEFECT 9 (vertices=69, convex hull=84)
After retessellation of defect 9, euler #=-81 (117168,346997,229748) : difference with theory (-79) = 2

CORRECTING DEFECT 10 (vertices=118, convex hull=150)
After retessellation of defect 10, euler #=-80 (117219,347216,229917) : difference with theory (-78) = 2

CORRECTING DEFECT 11 (vertices=5, convex hull=23)
After retessellation of defect 11, euler #=-79 (117220,347225,229926) : difference with theory (-77) = 2

CORRECTING DEFECT 12 (vertices=46, convex hull=82)
After retessellation of defect 12, euler #=-78 (117237,347310,229995) : difference with theory (-76) = 2

CORRECTING DEFECT 13 (vertices=160, convex hull=92)
After retessellation of defect 13, euler #=-77 (117250,347391,230064) : difference with theory (-75) = 2

CORRECTING DEFECT 14 (vertices=18, convex hull=50)
After retessellation of defect 14, euler #=-76 (117257,347429,230096) : difference with theory (-74) = 2

CORRECTING DEFECT 15 (vertices=1325, convex hull=709)
After retessellation of defect 15, euler #=-73 (117749,349292,231470) : difference with theory (-73) = 0

CORRECTING DEFECT 16 (vertices=208, convex hull=208)
After retessellation of defect 16, euler #=-72 (117834,349653,231747) : difference with theory (-72) = 0

CORRECTING DEFECT 17 (vertices=63, convex hull=35)
After retessellation of defect 17, euler #=-71 (117843,349694,231780) : difference with theory (-71) = 0

CORRECTING DEFECT 18 (vertices=77, convex hull=114)
After retessellation of defect 18, euler #=-70 (117888,349883,231925) : difference with theory (-70) = 0

CORRECTING DEFECT 19 (vertices=97, convex hull=114)
After retessellation of defect 19, euler #=-69 (117938,350084,232077) : difference with theory (-69) = 0

CORRECTING DEFECT 20 (vertices=86, convex hull=95)
After retessellation of defect 20, euler #=-68 (117961,350191,232162) : difference with theory (-68) = 0

CORRECTING DEFECT 21 (vertices=173, convex hull=179)
After retessellation of defect 21, euler #=-67 (118036,350505,232402) : difference with theory (-67) = 0

CORRECTING DEFECT 22 (vertices=569, convex hull=139)
After retessellation of defect 22, euler #=-66 (118086,350720,232568) : difference with theory (-66) = 0

CORRECTING DEFECT 23 (vertices=24, convex hull=19)
After retessellation of defect 23, euler #=-65 (118087,350730,232578) : difference with theory (-65) = 0

CORRECTING DEFECT 24 (vertices=54, convex hull=20)
After retessellation of defect 24, euler #=-64 (118090,350742,232588) : difference with theory (-64) = 0

CORRECTING DEFECT 25 (vertices=36, convex hull=25)
After retessellation of defect 25, euler #=-63 (118091,350757,232603) : difference with theory (-63) = 0

CORRECTING DEFECT 26 (vertices=40, convex hull=37)
After retessellation of defect 26, euler #=-62 (118096,350787,232629) : difference with theory (-62) = 0

CORRECTING DEFECT 27 (vertices=718, convex hull=372)
After retessellation of defect 27, euler #=-61 (118303,351588,233224) : difference with theory (-61) = 0

CORRECTING DEFECT 28 (vertices=66, convex hull=17)
After retessellation of defect 28, euler #=-60 (118306,351601,233235) : difference with theory (-60) = 0

CORRECTING DEFECT 29 (vertices=7, convex hull=29)
After retessellation of defect 29, euler #=-59 (118307,351611,233245) : difference with theory (-59) = 0

CORRECTING DEFECT 30 (vertices=182, convex hull=154)
After retessellation of defect 30, euler #=-58 (118383,351913,233472) : difference with theory (-58) = 0

CORRECTING DEFECT 31 (vertices=1212, convex hull=815)
After retessellation of defect 31, euler #=-58 (118870,353817,234889) : difference with theory (-57) = 1

CORRECTING DEFECT 32 (vertices=41, convex hull=85)
After retessellation of defect 32, euler #=-57 (118884,353894,234953) : difference with theory (-56) = 1

CORRECTING DEFECT 33 (vertices=6, convex hull=19)
After retessellation of defect 33, euler #=-56 (118884,353898,234958) : difference with theory (-55) = 1

CORRECTING DEFECT 34 (vertices=20, convex hull=54)
After retessellation of defect 34, euler #=-55 (118895,353949,234999) : difference with theory (-54) = 1

CORRECTING DEFECT 35 (vertices=243, convex hull=68)
After retessellation of defect 35, euler #=-54 (118916,354039,235069) : difference with theory (-53) = 1

CORRECTING DEFECT 36 (vertices=989, convex hull=317)
After retessellation of defect 36, euler #=-53 (119220,355112,235839) : difference with theory (-52) = 1

CORRECTING DEFECT 37 (vertices=38, convex hull=70)
After retessellation of defect 37, euler #=-52 (119230,355172,235890) : difference with theory (-51) = 1

CORRECTING DEFECT 38 (vertices=87, convex hull=127)
After retessellation of defect 38, euler #=-51 (119265,355338,236022) : difference with theory (-50) = 1

CORRECTING DEFECT 39 (vertices=37, convex hull=72)
After retessellation of defect 39, euler #=-50 (119293,355450,236107) : difference with theory (-49) = 1

CORRECTING DEFECT 40 (vertices=48, convex hull=80)
After retessellation of defect 40, euler #=-49 (119316,355556,236191) : difference with theory (-48) = 1

CORRECTING DEFECT 41 (vertices=38, convex hull=73)
After retessellation of defect 41, euler #=-48 (119342,355663,236273) : difference with theory (-47) = 1

CORRECTING DEFECT 42 (vertices=56, convex hull=41)
After retessellation of defect 42, euler #=-48 (119351,355712,236313) : difference with theory (-46) = 2

CORRECTING DEFECT 43 (vertices=59, convex hull=82)
After retessellation of defect 43, euler #=-47 (119380,355834,236407) : difference with theory (-45) = 2

CORRECTING DEFECT 44 (vertices=42, convex hull=57)
After retessellation of defect 44, euler #=-46 (119389,355884,236449) : difference with theory (-44) = 2

CORRECTING DEFECT 45 (vertices=125, convex hull=99)
After retessellation of defect 45, euler #=-45 (119419,356019,236555) : difference with theory (-43) = 2

CORRECTING DEFECT 46 (vertices=5, convex hull=14)
After retessellation of defect 46, euler #=-44 (119420,356025,236561) : difference with theory (-42) = 2

CORRECTING DEFECT 47 (vertices=28, convex hull=64)
After retessellation of defect 47, euler #=-43 (119429,356078,236606) : difference with theory (-41) = 2

CORRECTING DEFECT 48 (vertices=74, convex hull=74)
After retessellation of defect 48, euler #=-42 (119459,356199,236698) : difference with theory (-40) = 2

CORRECTING DEFECT 49 (vertices=22, convex hull=24)
After retessellation of defect 49, euler #=-41 (119462,356217,236714) : difference with theory (-39) = 2

CORRECTING DEFECT 50 (vertices=55, convex hull=28)
After retessellation of defect 50, euler #=-40 (119466,356237,236731) : difference with theory (-38) = 2

CORRECTING DEFECT 51 (vertices=58, convex hull=80)
After retessellation of defect 51, euler #=-39 (119489,356337,236809) : difference with theory (-37) = 2

CORRECTING DEFECT 52 (vertices=1405, convex hull=427)
After retessellation of defect 52, euler #=-38 (119643,357001,237320) : difference with theory (-36) = 2

CORRECTING DEFECT 53 (vertices=38, convex hull=68)
After retessellation of defect 53, euler #=-35 (119652,357057,237370) : difference with theory (-35) = 0

CORRECTING DEFECT 54 (vertices=1696, convex hull=991)
After retessellation of defect 54, euler #=-37 (120277,359472,239158) : difference with theory (-34) = 3

CORRECTING DEFECT 55 (vertices=15, convex hull=30)
After retessellation of defect 55, euler #=-36 (120279,359486,239171) : difference with theory (-33) = 3

CORRECTING DEFECT 56 (vertices=48, convex hull=90)
After retessellation of defect 56, euler #=-35 (120305,359601,239261) : difference with theory (-32) = 3

CORRECTING DEFECT 57 (vertices=12, convex hull=14)
After retessellation of defect 57, euler #=-34 (120306,359609,239269) : difference with theory (-31) = 3

CORRECTING DEFECT 58 (vertices=53, convex hull=32)
After retessellation of defect 58, euler #=-33 (120313,359640,239294) : difference with theory (-30) = 3

CORRECTING DEFECT 59 (vertices=48, convex hull=66)
After retessellation of defect 59, euler #=-32 (120335,359735,239368) : difference with theory (-29) = 3

CORRECTING DEFECT 60 (vertices=20, convex hull=42)
After retessellation of defect 60, euler #=-31 (120344,359777,239402) : difference with theory (-28) = 3

CORRECTING DEFECT 61 (vertices=54, convex hull=52)
After retessellation of defect 61, euler #=-30 (120355,359836,239451) : difference with theory (-27) = 3

CORRECTING DEFECT 62 (vertices=14, convex hull=35)
After retessellation of defect 62, euler #=-29 (120357,359852,239466) : difference with theory (-26) = 3

CORRECTING DEFECT 63 (vertices=144, convex hull=49)
After retessellation of defect 63, euler #=-28 (120376,359931,239527) : difference with theory (-25) = 3

CORRECTING DEFECT 64 (vertices=138, convex hull=69)
After retessellation of defect 64, euler #=-27 (120396,360020,239597) : difference with theory (-24) = 3

CORRECTING DEFECT 65 (vertices=32, convex hull=61)
After retessellation of defect 65, euler #=-26 (120405,360072,239641) : difference with theory (-23) = 3

CORRECTING DEFECT 66 (vertices=450, convex hull=100)
After retessellation of defect 66, euler #=-25 (120461,360290,239804) : difference with theory (-22) = 3

CORRECTING DEFECT 67 (vertices=23, convex hull=51)
After retessellation of defect 67, euler #=-24 (120463,360314,239827) : difference with theory (-21) = 3

CORRECTING DEFECT 68 (vertices=67, convex hull=45)
After retessellation of defect 68, euler #=-23 (120475,360367,239869) : difference with theory (-20) = 3

CORRECTING DEFECT 69 (vertices=234, convex hull=56)
After retessellation of defect 69, euler #=-22 (120485,360418,239911) : difference with theory (-19) = 3

CORRECTING DEFECT 70 (vertices=25, convex hull=35)
After retessellation of defect 70, euler #=-21 (120489,360440,239930) : difference with theory (-18) = 3

CORRECTING DEFECT 71 (vertices=88, convex hull=48)
After retessellation of defect 71, euler #=-20 (120504,360504,239980) : difference with theory (-17) = 3

CORRECTING DEFECT 72 (vertices=23, convex hull=35)
After retessellation of defect 72, euler #=-19 (120511,360538,240008) : difference with theory (-16) = 3

CORRECTING DEFECT 73 (vertices=431, convex hull=201)
After retessellation of defect 73, euler #=-18 (120565,360806,240223) : difference with theory (-15) = 3

CORRECTING DEFECT 74 (vertices=8, convex hull=24)
After retessellation of defect 74, euler #=-17 (120566,360816,240233) : difference with theory (-14) = 3

CORRECTING DEFECT 75 (vertices=468, convex hull=251)
After retessellation of defect 75, euler #=-15 (120715,361387,240657) : difference with theory (-13) = 2

CORRECTING DEFECT 76 (vertices=26, convex hull=75)
After retessellation of defect 76, euler #=-14 (120731,361464,240719) : difference with theory (-12) = 2

CORRECTING DEFECT 77 (vertices=23, convex hull=51)
After retessellation of defect 77, euler #=-13 (120742,361516,240761) : difference with theory (-11) = 2

CORRECTING DEFECT 78 (vertices=403, convex hull=83)
After retessellation of defect 78, euler #=-12 (120759,361605,240834) : difference with theory (-10) = 2

CORRECTING DEFECT 79 (vertices=90, convex hull=41)
After retessellation of defect 79, euler #=-11 (120781,361686,240894) : difference with theory (-9) = 2

CORRECTING DEFECT 80 (vertices=128, convex hull=90)
After retessellation of defect 80, euler #=-10 (120822,361844,241012) : difference with theory (-8) = 2

CORRECTING DEFECT 81 (vertices=954, convex hull=185)
After retessellation of defect 81, euler #=-9 (120885,362118,241224) : difference with theory (-7) = 2

CORRECTING DEFECT 82 (vertices=1863, convex hull=525)
After retessellation of defect 82, euler #=-6 (121290,363622,242326) : difference with theory (-6) = 0

CORRECTING DEFECT 83 (vertices=112, convex hull=119)
After retessellation of defect 83, euler #=-5 (121333,363801,242463) : difference with theory (-5) = 0

CORRECTING DEFECT 84 (vertices=170, convex hull=49)
After retessellation of defect 84, euler #=-4 (121353,363876,242519) : difference with theory (-4) = 0

CORRECTING DEFECT 85 (vertices=54, convex hull=64)
After retessellation of defect 85, euler #=-3 (121362,363932,242567) : difference with theory (-3) = 0

CORRECTING DEFECT 86 (vertices=59, convex hull=87)
After retessellation of defect 86, euler #=-2 (121392,364055,242661) : difference with theory (-2) = 0

CORRECTING DEFECT 87 (vertices=43, convex hull=38)
After retessellation of defect 87, euler #=-1 (121397,364085,242687) : difference with theory (-1) = 0

CORRECTING DEFECT 88 (vertices=213, convex hull=97)
After retessellation of defect 88, euler #=0 (121424,364213,242789) : difference with theory (0) = 0

CORRECTING DEFECT 89 (vertices=50, convex hull=37)
After retessellation of defect 89, euler #=1 (121429,364242,242814) : difference with theory (1) = 0

CORRECTING DEFECT 90 (vertices=57, convex hull=91)
After retessellation of defect 90, euler #=2 (121444,364326,242884) : difference with theory (2) = 0
computing original vertex metric properties...
storing new metric properties...
computing tessellation statistics...
vertex spacing 0.90 +- 0.30 (0.01-->15.22) (max @ vno 33137 --> 119963)
face area 0.00 +- 0.00 (0.00-->0.00)
performing soap bubble on retessellated vertices for 0 iterations...
vertex spacing 0.90 +- 0.30 (0.01-->15.22) (max @ vno 33137 --> 119963)
face area 0.00 +- 0.00 (0.00-->0.00)
tessellation finished, orienting corrected surface...
308 mutations (34.9%), 574 crossovers (65.1%), 717 vertices were eliminated
building final representation...
20838 vertices and 0 faces have been removed from triangulation
after topology correction, eno=2 (nv=121444, nf=242884, ne=364326, g=0)
writing corrected surface to /usr/local/freesurfer/subjects/jmcoreg/surf/rh.orig...

0.000 % of the vertices (0 vertices) exhibit an orientation change
topology fixing took 69.4 minutes
0 defective edges
removing intersecting faces
000: 2434 intersecting
001: 182 intersecting
002: 58 intersecting
003: 2 intersecting

 mris_euler_number ../surf/rh.orig

euler # = v-e+f = 2g-2: 121444 - 364326 + 242884 = 2 --> 0 holes
      F =2V-4:          242884 = 242888-4 (0)
      2E=3F:            728652 = 728652 (0)

total defect index = 0
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_remove_intersection ../surf/rh.orig ../surf/rh.orig

intersection removal took 0.00 hours
removing intersecting faces
000: 1252 intersecting
001: 143 intersecting
002: 50 intersecting
writing corrected surface to ../surf/rh.orig

 rm ../surf/rh.inflated

#--------------------------------------------
#@# Make White Surf rh Wed Jul 27 02:38:38 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_make_surfaces -noaparc -whiteonly -mgz -T1 brain.finalsurfs jmcoreg rh

only generating white matter surface
not using aparc to prevent surfaces crossing the midline
INFO: assuming MGZ format for volumes.
using brain.finalsurfs as T1 volume...
$Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $
$Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/filled.mgz...
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/brain.finalsurfs.mgz...
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
9807 bright wm thresholded.
11886 bright non-wm voxels segmented.
reading original surface position from /usr/local/freesurfer/subjects/jmcoreg/surf/rh.orig...
computing class statistics...
border white:    261039 voxels (1.56%)
border gray      319152 voxels (1.90%)
WM (96.0): 96.2 +- 6.5 [70.0 --> 110.0]
GM (86.0) : 84.7 +- 11.4 [30.0 --> 110.0]
setting MIN_GRAY_AT_WHITE_BORDER to 71.6 (was 70)
setting MAX_BORDER_WHITE to 107.5 (was 105)
setting MIN_BORDER_WHITE to 83.0 (was 85)
setting MAX_CSF to 60.2 (was 40)
setting MAX_GRAY to 94.5 (was 95)
setting MAX_GRAY_AT_CSF_BORDER to 77.3 (was 75)
setting MIN_GRAY_AT_CSF_BORDER to 48.8 (was 40)
repositioning cortical surface to gray/white boundary
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.mgz...
smoothing T1 volume with sigma = 2.000
vertex spacing 0.82 +- 0.25 (0.01-->8.51) (max @ vno 119789 --> 120205)
face area 0.28 +- 0.14 (0.00-->9.91)
mean absolute distance = 0.85 +- 1.17
4220 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
smoothing contralateral hemisphere...
using class modes intead of means, discounting robust sigmas....
intensity peaks found at WM=101,    GM=83
mean inside = 94.9, mean outside = 85.0
smoothing surface for 5 iterations...
inhibiting deformation at non-cortical midline structures...
removing 4 vertex label from ripped group
mean border=89.7, 556 (556) missing vertices, mean dist -0.0 [1.0 (%44.4)->0.7 (%55.6))]
%52 local maxima, %41 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=2.0, host=xubun, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
complete_dist_mat 0
rms 0
smooth_averages 0
remove_neg 0
ico_order 0
which_surface 0
target_radius 0.000000
nfields 0
scale 0.000000
desired_rms_height 0.000000
momentum 0.000000
nbhd_size 0
max_nbrs 0
niterations 25
nsurfaces 0
SURFACES 3
flags 0 (0)
use curv 0
no sulc 0
no rigid align 0
mris->nsize 2
mris->hemisphere 1
randomSeed 0

smoothing T1 volume with sigma = 1.000
vertex spacing 0.88 +- 0.29 (0.05-->8.90) (max @ vno 119789 --> 120205)
face area 0.28 +- 0.16 (0.00-->9.34)
mean absolute distance = 0.50 +- 0.90
4215 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3564624.5, rms=7.61
001: dt: 0.5000, sse=4255195.0, rms=6.114 (0.000%)
002: dt: 0.5000, sse=4272018.0, rms=5.060 (0.000%)
003: dt: 0.5000, sse=4250143.5, rms=4.331 (0.000%)
004: dt: 0.5000, sse=4138907.5, rms=3.796 (0.000%)
005: dt: 0.5000, sse=4075945.2, rms=3.456 (0.000%)
006: dt: 0.5000, sse=4014460.8, rms=3.263 (0.000%)
007: dt: 0.5000, sse=3988263.0, rms=3.121 (0.000%)
008: dt: 0.5000, sse=3980112.8, rms=3.038 (0.000%)
009: dt: 0.5000, sse=3969586.8, rms=2.928 (0.000%)
010: dt: 0.5000, sse=3951777.5, rms=2.832 (0.000%)
011: dt: 0.5000, sse=3965322.0, rms=2.745 (0.000%)
012: dt: 0.5000, sse=3951308.8, rms=2.676 (0.000%)
013: dt: 0.5000, sse=3944107.5, rms=2.614 (0.000%)
rms = 2.58, time step reduction 1 of 3 to 0.250...
014: dt: 0.5000, sse=3944838.8, rms=2.580 (0.000%)
015: dt: 0.2500, sse=3070126.5, rms=2.369 (0.000%)
016: dt: 0.2500, sse=2970717.5, rms=2.311 (0.000%)
rms = 2.28, time step reduction 2 of 3 to 0.125...
017: dt: 0.2500, sse=2945111.5, rms=2.284 (0.000%)
018: dt: 0.1250, sse=2916221.5, rms=2.214 (0.000%)
rms = 2.18, time step reduction 3 of 3 to 0.062...
019: dt: 0.1250, sse=2885402.0, rms=2.180 (0.000%)
positioning took 1.5 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
removing 3 vertex label from ripped group
removing 3 vertex label from ripped group
removing 2 vertex label from ripped group
removing 1 vertex label from ripped group
mean border=91.0, 608 (279) missing vertices, mean dist -0.2 [0.6 (%59.2)->0.3 (%40.8))]
%61 local maxima, %31 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=1.0, host=xubun, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.500
vertex spacing 0.88 +- 0.29 (0.04-->9.12) (max @ vno 119789 --> 120205)
face area 0.32 +- 0.19 (0.00-->12.50)
mean absolute distance = 0.40 +- 0.64
3409 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3098625.5, rms=3.33
020: dt: 0.5000, sse=3364343.0, rms=2.613 (0.000%)
021: dt: 0.5000, sse=3527086.5, rms=2.419 (0.000%)
022: dt: 0.5000, sse=3532191.8, rms=2.324 (0.000%)
rms = 2.29, time step reduction 1 of 3 to 0.250...
023: dt: 0.5000, sse=3609642.5, rms=2.294 (0.000%)
024: dt: 0.2500, sse=3252498.0, rms=2.188 (0.000%)
025: dt: 0.2500, sse=3182493.5, rms=2.136 (0.000%)
rms = 2.13, time step reduction 2 of 3 to 0.125...
026: dt: 0.2500, sse=3163070.5, rms=2.129 (0.000%)
rms = 2.08, time step reduction 3 of 3 to 0.062...
027: dt: 0.1250, sse=3137988.8, rms=2.080 (0.000%)
positioning took 0.6 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
removing 1 vertex label from ripped group
removing 3 vertex label from ripped group
removing 2 vertex label from ripped group
mean border=92.2, 653 (205) missing vertices, mean dist -0.2 [0.5 (%59.8)->0.3 (%40.2))]
%72 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=0.5, host=xubun, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.250
vertex spacing 0.88 +- 0.29 (0.04-->9.02) (max @ vno 119789 --> 120205)
face area 0.32 +- 0.19 (0.00-->12.84)
mean absolute distance = 0.35 +- 0.49
3193 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3214049.8, rms=2.81
028: dt: 0.5000, sse=3475603.0, rms=2.327 (0.000%)
029: dt: 0.5000, sse=3610160.5, rms=2.089 (0.000%)
rms = 2.17, time step reduction 1 of 3 to 0.250...
030: dt: 0.2500, sse=3414149.2, rms=2.003 (0.000%)
rms = 1.96, time step reduction 2 of 3 to 0.125...
031: dt: 0.2500, sse=3364269.5, rms=1.962 (0.000%)
032: dt: 0.1250, sse=3308422.8, rms=1.888 (0.000%)
rms = 1.85, time step reduction 3 of 3 to 0.062...
033: dt: 0.1250, sse=3285882.5, rms=1.853 (0.000%)
positioning took 0.5 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
removing 1 vertex label from ripped group
removing 3 vertex label from ripped group
mean border=92.8, 703 (168) missing vertices, mean dist -0.1 [0.4 (%54.3)->0.3 (%45.7))]
%78 local maxima, %14 large gradients and % 1 min vals, 0 gradients ignored
tol=1.0e-04, sigma=0.2, host=xubun, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
writing white matter surface to /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white...
writing smoothed curvature to rh.curv
000: dt: 0.0000, sse=3308208.8, rms=2.17
034: dt: 0.5000, sse=3933859.2, rms=2.019 (0.000%)
035: dt: 0.5000, sse=3737889.2, rms=1.913 (0.000%)
rms = 2.00, time step reduction 1 of 3 to 0.250...
036: dt: 0.2500, sse=3650457.0, rms=1.798 (0.000%)
rms = 1.83, time step reduction 2 of 3 to 0.125...
rms = 1.78, time step reduction 3 of 3 to 0.062...
037: dt: 0.1250, sse=3636957.5, rms=1.776 (0.000%)
positioning took 0.4 minutes
inhibiting deformation at non-cortical midline structures...
removing 2 vertex label from ripped group
generating cortex label...
14 non-cortical segments detected
only using segment with 1849 vertices
erasing segment 0 (vno[0] = 40043)
erasing segment 2 (vno[0] = 47405)
erasing segment 3 (vno[0] = 70289)
erasing segment 4 (vno[0] = 74854)
erasing segment 5 (vno[0] = 80751)
erasing segment 6 (vno[0] = 82636)
erasing segment 7 (vno[0] = 82653)
erasing segment 8 (vno[0] = 86017)
erasing segment 9 (vno[0] = 88279)
erasing segment 10 (vno[0] = 89760)
erasing segment 11 (vno[0] = 89771)
erasing segment 12 (vno[0] = 89783)
erasing segment 13 (vno[0] = 92720)
writing cortex label to /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label...
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.curv
writing smoothed area to rh.area
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.area
vertex spacing 0.88 +- 0.29 (0.05-->9.06) (max @ vno 119789 --> 120205)
face area 0.32 +- 0.19 (0.00-->12.70)
refinement took 4.6 minutes
#--------------------------------------------
#@# Smooth2 rh Wed Jul 27 02:43:12 EDT 2016

 mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white ../surf/rh.smoothwm

/usr/local/freesurfer/subjects/jmcoreg/scripts
smoothing for 3 iterations
setting seed for random number generator to 1234
smoothing surface tessellation for 3 iterations...
smoothing complete - recomputing first and second fundamental forms...
#--------------------------------------------
#@# Inflation2 rh Wed Jul 27 02:43:15 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated

avg radius = 44.8 mm, total surface area = 70667 mm^2
writing inflated surface to ../surf/rh.inflated
writing sulcal depths to ../surf/rh.sulc
 step 000: RMS=0.119 (target=0.015)    step 005: RMS=0.086 (target=0.015)    step 010: RMS=0.068 (target=0.015)    step 015: RMS=0.057 (target=0.015)    step 020: RMS=0.049 (target=0.015)    step 025: RMS=0.042 (target=0.015)    step 030: RMS=0.038 (target=0.015)    step 035: RMS=0.034 (target=0.015)    step 040: RMS=0.029 (target=0.015)    step 045: RMS=0.027 (target=0.015)    step 050: RMS=0.025 (target=0.015)    step 055: RMS=0.024 (target=0.015)    step 060: RMS=0.022 (target=0.015)   
inflation complete.
inflation took 0.4 minutes

 mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/rh.inflated

normalizing curvature values.
averaging curvature patterns 5 times.
sampling 10 neighbors out to a distance of 10 mm
149 vertices thresholded to be in k1 ~ [-0.92 1.11], k2 ~ [-0.20 0.44]
total integrated curvature = 0.411*4pi (5.159) --> 1 handles
ICI = 1.2, FI = 7.8, variation=134.359
130 vertices thresholded to be in [-0.15 0.03]
writing Gaussian curvature to ../surf/rh.inflated.K...thresholding curvature at 99.90% level
curvature mean = 0.000, std = 0.003
112 vertices thresholded to be in [-0.27 0.45]
done.
writing mean curvature to ../surf/rh.inflated.H...curvature mean = -0.016, std = 0.024
done.

#-----------------------------------------
#@# Curvature Stats rh Wed Jul 27 02:44:59 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/surf

 mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm jmcoreg rh curv sulc

             Toggling save flag on curvature files                       [ ok ]
                 Outputting results using filestem   [ ../stats/rh.curv.stats ]
             Toggling save flag on curvature files                       [ ok ]
                                   Setting surface      [ jmcoreg/rh.smoothwm ]
                                Reading surface...                       [ ok ]
                                   Setting texture                     [ curv ]
                                Reading texture...                       [ ok ]
                                   Setting texture                     [ sulc ]
                                Reading texture...Gb_filter = 0
                       [ ok ]
      Calculating Discrete Principal Curvatures...
   Determining geometric order for vertex faces... [####################] [ ok ]
                      Determining KH curvatures... [####################] [ ok ]
                    Determining k1k2 curvatures... [####################] [ ok ]
                                   deltaViolations                      [ 262 ]
Gb_filter = 0

WARN:    S lookup   min:                          -0.368694
WARN:    S explicit min:                          0.000000    vertex = 46
#--------------------------------------------
#@# Sphere rh Wed Jul 27 02:45:02 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere

setting seed for random number genererator to 1234
$Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading original vertex positions...
unfolding cortex into spherical form...
surface projected - minimizing metric distortion...
scaling brain by 0.325...
MRISunfold() max_passes = 1 -------
tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
using quadratic fit line minimization
complete_dist_mat 0
rms 0
smooth_averages 0
remove_neg 0
ico_order 0
which_surface 0
target_radius 0.000000
nfields 0
scale 1.000000
desired_rms_height -1.000000
momentum 0.900000
nbhd_size 7
max_nbrs 8
niterations 25
nsurfaces 0
SURFACES 3
flags 0 (0)
use curv 0
no sulc 0
no rigid align 0
mris->nsize 2
mris->hemisphere 1
randomSeed 1234

--------------------
  mrisRemoveNegativeArea()
pass 1: epoch 1 of 3 starting distance error %18.45
pass 1: epoch 2 of 3 starting distance error %18.40
unfolding complete - removing small folds...
starting distance error %18.18
removing remaining folds...
final distance error %18.22
MRISunfold() return, current seed 1234
writing spherical brain to ../surf/rh.sphere
spherical transformation took 0.72 hours
#--------------------------------------------
#@# Surf Reg rh Wed Jul 27 03:28:25 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_register -curv ../surf/rh.sphere /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif ../surf/rh.sphere.reg

using smoothwm curvature for final alignment
$Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading surface from ../surf/rh.sphere...
reading template parameterization from /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif...
MRISregister() -------
max_passes = 4
min_degrees = 0.500000
max_degrees = 64.000000
nangles = 8
tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
using quadratic fit line minimization
complete_dist_mat 0
rms 0
smooth_averages 0
remove_neg 0
ico_order 0
which_surface 0
target_radius 0.000000
nfields 0
scale 0.000000
desired_rms_height -1.000000
momentum 0.950000
nbhd_size -10
max_nbrs 10
niterations 25
nsurfaces 0
SURFACES 3
flags 16 (10)
use curv 16
no sulc 0
no rigid align 0
mris->nsize 1
mris->hemisphere 1
randomSeed 0

tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
using quadratic fit line minimization
--------------------
1 Reading rh.sulc
curvature mean = -0.000, std = 0.601
curvature mean = 0.039, std = 0.926
curvature mean = 0.026, std = 0.880
Starting MRISrigidBodyAlignGlobal()
  d=64.00 min @ (0.00, 0.00, 16.00) sse = 340714.1, tmin=0.7047
  d=32.00 min @ (0.00, -8.00, -8.00) sse = 249845.4, tmin=1.4128
  d=16.00 min @ (4.00, 4.00, 4.00) sse = 215688.8, tmin=2.1268
  d=8.00 min @ (0.00, -2.00, 0.00) sse = 212304.7, tmin=2.8964
  d=4.00 min @ (0.00, 1.00, -1.00) sse = 209932.3, tmin=3.6804
  d=1.00 min @ (0.00, -0.25, 0.00) sse = 209826.3, tmin=5.2528
  d=0.50 min @ (0.00, 0.00, 0.12) sse = 209824.3, tmin=6.0188
tol=1.0e+00, sigma=0.5, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
using quadratic fit line minimization
MRISrigidBodyAlignGlobal() done   6.02 min
curvature mean = 0.014, std = 0.956
curvature mean = 0.009, std = 0.953
curvature mean = 0.013, std = 0.969
curvature mean = 0.004, std = 0.979
curvature mean = 0.010, std = 0.971
curvature mean = 0.001, std = 0.991
2 Reading smoothwm
curvature mean = -0.043, std = 0.331
curvature mean = 0.005, std = 0.070
curvature mean = 0.067, std = 0.330
curvature mean = 0.004, std = 0.084
curvature mean = 0.044, std = 0.478
curvature mean = 0.004, std = 0.090
curvature mean = 0.025, std = 0.603
curvature mean = 0.003, std = 0.093
curvature mean = 0.010, std = 0.716
MRISregister() return, current seed 0
writing registered surface to ../surf/rh.sphere.reg...
expanding nbhd size to 1
#--------------------------------------------
#@# Jacobian white rh Wed Jul 27 03:49:00 EDT 2016

 mris_jacobian ../surf/rh.white ../surf/rh.sphere.reg ../surf/rh.jacobian_white

reading surface from ../surf/rh.white...
writing curvature file ../surf/rh.jacobian_white
#--------------------------------------------
#@# AvgCurv rh Wed Jul 27 03:49:01 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mrisp_paint -a 5 /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv

averaging curvature patterns 5 times...
reading surface from ../surf/rh.sphere.reg...
reading template parameterization from /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif...
writing curvature file to ../surf/rh.avg_curv...
#-----------------------------------------
#@# Cortical Parc rh Wed Jul 27 03:49:03 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg rh ../surf/rh.sphere.reg /usr/local/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot

setting seed for random number generator to 1234
using ../mri/aseg.mgz aseg volume to correct midline
$Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading atlas from /usr/local/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs...
reading color table from GCSA file....
average std = 0.7   using min determinant for regularization = 0.006
0 singular and 311 ill-conditioned covariance matrices regularized
input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
labeling surface...
1057 labels changed using aseg
relabeling using gibbs priors...
000:   2619 changed, 121444 examined...
001:    600 changed, 11177 examined...
002:    134 changed, 3320 examined...
003:     48 changed, 836 examined...
004:     18 changed, 302 examined...
005:      9 changed, 100 examined...
006:      2 changed, 45 examined...
007:      0 changed, 10 examined...
224 labels changed using aseg
000: 111 total segments, 70 labels (495 vertices) changed
001: 44 total segments, 3 labels (29 vertices) changed
002: 41 total segments, 0 labels (0 vertices) changed
10 filter iterations complete (10 requested, 26 changed)
rationalizing unknown annotations with cortex label
relabeling unknown label...
relabeling corpuscallosum label...
1672 vertices marked for relabeling...
1672 labels changed in reclassification.
writing output to ../label/rh.aparc.annot...
classification took 0 minutes and 32 seconds.
#--------------------------------------------
#@# Make Pial Surf rh Wed Jul 27 03:49:34 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs jmcoreg rh

-white NOWRITE indicates that white, curv, area, and cortex.label files will not be written...
INFO: assuming MGZ format for volumes.
using brain.finalsurfs as T1 volume...
$Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $
$Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/filled.mgz...
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/brain.finalsurfs.mgz...
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
9807 bright wm thresholded.
11886 bright non-wm voxels segmented.
reading original surface position from /usr/local/freesurfer/subjects/jmcoreg/surf/rh.orig...
computing class statistics...
border white:    261039 voxels (1.56%)
border gray      319152 voxels (1.90%)
WM (96.0): 96.2 +- 6.5 [70.0 --> 110.0]
GM (86.0) : 84.7 +- 11.4 [30.0 --> 110.0]
setting MIN_GRAY_AT_WHITE_BORDER to 71.6 (was 70)
setting MAX_BORDER_WHITE to 107.5 (was 105)
setting MIN_BORDER_WHITE to 83.0 (was 85)
setting MAX_CSF to 60.2 (was 40)
setting MAX_GRAY to 94.5 (was 95)
setting MAX_GRAY_AT_CSF_BORDER to 77.3 (was 75)
setting MIN_GRAY_AT_CSF_BORDER to 48.8 (was 40)
smoothing contralateral hemisphere...
using class modes intead of means, discounting robust sigmas....
intensity peaks found at WM=101,    GM=83
mean inside = 94.9, mean outside = 85.0
smoothing surface for 5 iterations...
reading colortable from annotation file...
colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
repositioning cortical surface to gray/white boundary
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.mgz...
smoothing T1 volume with sigma = 2.000
vertex spacing 0.82 +- 0.25 (0.01-->8.51) (max @ vno 119789 --> 120205)
face area 0.28 +- 0.14 (0.00-->9.91)
mean absolute distance = 0.85 +- 1.17
4258 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
inhibiting deformation at non-cortical midline structures...
deleting segment 5 with 17 points - only 0.00% unknown
deleting segment 6 with 186 points - only 0.00% unknown
deleting segment 9 with 53 points - only 0.00% unknown
removing 4 vertex label from ripped group
deleting segment 11 with 7 points - only 0.00% unknown
deleting segment 13 with 12 points - only 0.00% unknown
mean border=89.7, 562 (558) missing vertices, mean dist -0.0 [1.0 (%44.5)->0.7 (%55.5))]
%52 local maxima, %41 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=2.0, host=xubun, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
complete_dist_mat 0
rms 0
smooth_averages 0
remove_neg 0
ico_order 0
which_surface 0
target_radius 0.000000
nfields 0
scale 0.000000
desired_rms_height 0.000000
momentum 0.000000
nbhd_size 0
max_nbrs 0
niterations 25
nsurfaces 0
SURFACES 3
flags 0 (0)
use curv 0
no sulc 0
no rigid align 0
mris->nsize 2
mris->hemisphere 1
randomSeed 0

smoothing T1 volume with sigma = 1.000
vertex spacing 0.88 +- 0.29 (0.05-->9.02) (max @ vno 119789 --> 120205)
face area 0.28 +- 0.16 (0.00-->9.93)
mean absolute distance = 0.50 +- 0.91
4247 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3573586.5, rms=7.60
001: dt: 0.5000, sse=4265061.0, rms=6.110 (0.000%)
002: dt: 0.5000, sse=4281485.5, rms=5.056 (0.000%)
003: dt: 0.5000, sse=4258997.0, rms=4.328 (0.000%)
004: dt: 0.5000, sse=4147799.2, rms=3.794 (0.000%)
005: dt: 0.5000, sse=4085062.8, rms=3.454 (0.000%)
006: dt: 0.5000, sse=4025959.0, rms=3.267 (0.000%)
007: dt: 0.5000, sse=3997206.5, rms=3.116 (0.000%)
008: dt: 0.5000, sse=3991874.8, rms=3.047 (0.000%)
009: dt: 0.5000, sse=3978115.5, rms=2.931 (0.000%)
010: dt: 0.5000, sse=3964979.8, rms=2.834 (0.000%)
011: dt: 0.5000, sse=3977142.2, rms=2.744 (0.000%)
012: dt: 0.5000, sse=3966340.2, rms=2.674 (0.000%)
013: dt: 0.5000, sse=3953830.5, rms=2.611 (0.000%)
rms = 2.58, time step reduction 1 of 3 to 0.250...
014: dt: 0.5000, sse=3959692.8, rms=2.577 (0.000%)
015: dt: 0.2500, sse=3079698.5, rms=2.366 (0.000%)
016: dt: 0.2500, sse=2979400.8, rms=2.309 (0.000%)
rms = 2.28, time step reduction 2 of 3 to 0.125...
017: dt: 0.2500, sse=2954398.8, rms=2.284 (0.000%)
018: dt: 0.1250, sse=2926116.8, rms=2.212 (0.000%)
rms = 2.18, time step reduction 3 of 3 to 0.062...
019: dt: 0.1250, sse=2894357.5, rms=2.178 (0.000%)
positioning took 1.5 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
deleting segment 3 with 12 points - only 0.00% unknown
deleting segment 4 with 183 points - only 0.00% unknown
deleting segment 6 with 7 points - only 0.00% unknown
removing 3 vertex label from ripped group
deleting segment 10 with 55 points - only 0.00% unknown
removing 3 vertex label from ripped group
deleting segment 12 with 43 points - only 11.63% unknown
deleting segment 13 with 8 points - only 0.00% unknown
deleting segment 14 with 23 points - only 43.48% unknown
deleting segment 15 with 11 points - only 0.00% unknown
removing 1 vertex label from ripped group
deleting segment 16 with 1 points - only 0.00% unknown
deleting segment 17 with 15 points - only 0.00% unknown
mean border=91.0, 627 (276) missing vertices, mean dist -0.2 [0.6 (%59.2)->0.3 (%40.8))]
%62 local maxima, %31 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=1.0, host=xubun, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.500
vertex spacing 0.88 +- 0.29 (0.04-->9.16) (max @ vno 119789 --> 120205)
face area 0.32 +- 0.19 (0.00-->12.03)
mean absolute distance = 0.40 +- 0.64
3453 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3115338.5, rms=3.32
020: dt: 0.5000, sse=3377624.2, rms=2.609 (0.000%)
021: dt: 0.5000, sse=3541501.0, rms=2.417 (0.000%)
022: dt: 0.5000, sse=3549728.2, rms=2.322 (0.000%)
rms = 2.29, time step reduction 1 of 3 to 0.250...
023: dt: 0.5000, sse=3623076.8, rms=2.289 (0.000%)
024: dt: 0.2500, sse=3268107.5, rms=2.184 (0.000%)
025: dt: 0.2500, sse=3201241.5, rms=2.132 (0.000%)
rms = 2.13, time step reduction 2 of 3 to 0.125...
026: dt: 0.2500, sse=3178899.8, rms=2.125 (0.000%)
rms = 2.08, time step reduction 3 of 3 to 0.062...
027: dt: 0.1250, sse=3153339.0, rms=2.076 (0.000%)
positioning took 0.6 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
deleting segment 1 with 17 points - only 0.00% unknown
deleting segment 2 with 181 points - only 0.00% unknown
removing 3 vertex label from ripped group
deleting segment 5 with 58 points - only 0.00% unknown
removing 2 vertex label from ripped group
deleting segment 7 with 43 points - only 11.63% unknown
deleting segment 8 with 9 points - only 0.00% unknown
deleting segment 9 with 14 points - only 21.43% unknown
removing 1 vertex label from ripped group
deleting segment 10 with 1 points - only 0.00% unknown
deleting segment 11 with 11 points - only 0.00% unknown
deleting segment 12 with 12 points - only 0.00% unknown
removing 4 vertex label from ripped group
deleting segment 13 with 4 points - only 0.00% unknown
mean border=92.2, 672 (205) missing vertices, mean dist -0.2 [0.5 (%59.8)->0.3 (%40.2))]
%72 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=0.5, host=xubun, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.250
vertex spacing 0.88 +- 0.29 (0.04-->9.20) (max @ vno 119789 --> 120205)
face area 0.32 +- 0.19 (0.00-->11.81)
mean absolute distance = 0.35 +- 0.49
3237 vertices more than 2 sigmas from mean.
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3231986.5, rms=2.81
028: dt: 0.5000, sse=3496317.2, rms=2.316 (0.000%)
029: dt: 0.5000, sse=3632108.2, rms=2.084 (0.000%)
rms = 2.16, time step reduction 1 of 3 to 0.250...
030: dt: 0.2500, sse=3435311.5, rms=2.000 (0.000%)
rms = 1.96, time step reduction 2 of 3 to 0.125...
031: dt: 0.2500, sse=3386916.5, rms=1.959 (0.000%)
032: dt: 0.1250, sse=3330248.0, rms=1.886 (0.000%)
rms = 1.85, time step reduction 3 of 3 to 0.062...
033: dt: 0.1250, sse=3310142.0, rms=1.851 (0.000%)
positioning took 0.5 minutes
inhibiting deformation at non-cortical midline structures...
removing 3 vertex label from ripped group
deleting segment 1 with 25 points - only 0.00% unknown
deleting segment 2 with 172 points - only 0.00% unknown
deleting segment 3 with 8 points - only 0.00% unknown
removing 3 vertex label from ripped group
deleting segment 6 with 62 points - only 0.00% unknown
deleting segment 7 with 43 points - only 11.63% unknown
deleting segment 8 with 9 points - only 0.00% unknown
deleting segment 9 with 9 points - only 11.11% unknown
removing 1 vertex label from ripped group
deleting segment 10 with 1 points - only 0.00% unknown
deleting segment 11 with 11 points - only 0.00% unknown
deleting segment 12 with 15 points - only 0.00% unknown
mean border=92.8, 717 (166) missing vertices, mean dist -0.1 [0.4 (%54.3)->0.3 (%45.7))]
%79 local maxima, %14 large gradients and % 0 min vals, 0 gradients ignored
tol=1.0e-04, sigma=0.2, host=xubun, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
repositioning cortical surface to gray/csf boundary.
smoothing T1 volume with sigma = 2.000
averaging target values for 5 iterations...
000: dt: 0.0000, sse=3332058.8, rms=2.16
034: dt: 0.5000, sse=3960840.8, rms=2.001 (0.000%)
035: dt: 0.5000, sse=3760956.5, rms=1.911 (0.000%)
rms = 1.99, time step reduction 1 of 3 to 0.250...
036: dt: 0.2500, sse=3675288.0, rms=1.801 (0.000%)
rms = 1.82, time step reduction 2 of 3 to 0.125...
rms = 1.78, time step reduction 3 of 3 to 0.062...
037: dt: 0.1250, sse=3660832.0, rms=1.778 (0.000%)
positioning took 0.4 minutes
inhibiting deformation at non-cortical midline structures...
removing 2 vertex label from ripped group
smoothing surface for 5 iterations...
mean border=71.6, 700 (700) missing vertices, mean dist 1.7 [1.3 (%0.1)->2.9 (%99.9))]
%29 local maxima, %26 large gradients and %38 min vals, 2351 gradients ignored
tol=1.0e-04, sigma=2.0, host=xubun, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 1.000
averaging target values for 5 iterations...
000: dt: 0.0000, sse=13467877.0, rms=22.40
001: dt: 0.5000, sse=11422644.0, rms=20.234 (0.000%)
002: dt: 0.5000, sse=9735209.0, rms=18.251 (0.000%)
003: dt: 0.5000, sse=8375654.0, rms=16.453 (0.000%)
004: dt: 0.5000, sse=7429051.5, rms=14.832 (0.000%)
005: dt: 0.5000, sse=6748139.0, rms=13.382 (0.000%)
006: dt: 0.5000, sse=6346193.5, rms=12.098 (0.000%)
007: dt: 0.5000, sse=6057248.5, rms=10.907 (0.000%)
008: dt: 0.5000, sse=5955699.0, rms=9.833 (0.000%)
009: dt: 0.5000, sse=5896868.5, rms=8.854 (0.000%)
010: dt: 0.5000, sse=5989283.0, rms=8.032 (0.000%)
011: dt: 0.5000, sse=6013816.0, rms=7.333 (0.000%)
012: dt: 0.5000, sse=6189706.0, rms=6.785 (0.000%)
013: dt: 0.5000, sse=6291936.0, rms=6.350 (0.000%)
014: dt: 0.5000, sse=6407896.5, rms=6.015 (0.000%)
015: dt: 0.5000, sse=6459961.0, rms=5.739 (0.000%)
016: dt: 0.5000, sse=6532799.0, rms=5.507 (0.000%)
017: dt: 0.5000, sse=6513723.5, rms=5.334 (0.000%)
018: dt: 0.5000, sse=6564580.5, rms=5.187 (0.000%)
019: dt: 0.5000, sse=6567544.0, rms=5.091 (0.000%)
020: dt: 0.5000, sse=6600712.5, rms=5.010 (0.000%)
rms = 4.97, time step reduction 1 of 3 to 0.250...
021: dt: 0.5000, sse=6586358.0, rms=4.973 (0.000%)
022: dt: 0.2500, sse=5005092.0, rms=4.472 (0.000%)
023: dt: 0.2500, sse=4871144.5, rms=4.357 (0.000%)
rms = 4.35, time step reduction 2 of 3 to 0.125...
024: dt: 0.2500, sse=4793072.5, rms=4.346 (0.000%)
025: dt: 0.1250, sse=4524267.0, rms=4.173 (0.000%)
rms = 4.13, time step reduction 3 of 3 to 0.062...
026: dt: 0.1250, sse=4469119.0, rms=4.134 (0.000%)
positioning took 2.0 minutes
mean border=68.6, 3438 (193) missing vertices, mean dist 0.3 [0.3 (%28.9)->0.8 (%71.1))]
%41 local maxima, %20 large gradients and %30 min vals, 1564 gradients ignored
tol=1.0e-04, sigma=1.0, host=xubun, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.500
averaging target values for 5 iterations...
000: dt: 0.0000, sse=5160310.5, rms=6.34
027: dt: 0.5000, sse=5171659.0, rms=5.542 (0.000%)
028: dt: 0.5000, sse=6245754.0, rms=5.292 (0.000%)
rms = 5.35, time step reduction 1 of 3 to 0.250...
029: dt: 0.2500, sse=5440178.5, rms=4.777 (0.000%)
030: dt: 0.2500, sse=5097922.0, rms=4.658 (0.000%)
rms = 4.69, time step reduction 2 of 3 to 0.125...
031: dt: 0.1250, sse=4998364.5, rms=4.582 (0.000%)
032: dt: 0.1250, sse=4865887.0, rms=4.492 (0.000%)
rms = 4.46, time step reduction 3 of 3 to 0.062...
033: dt: 0.1250, sse=4842837.5, rms=4.456 (0.000%)
positioning took 0.7 minutes
mean border=67.5, 4689 (166) missing vertices, mean dist 0.2 [0.3 (%31.2)->0.5 (%68.8))]
%46 local maxima, %15 large gradients and %29 min vals, 1495 gradients ignored
tol=1.0e-04, sigma=0.5, host=xubun, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
smoothing T1 volume with sigma = 0.250
averaging target values for 5 iterations...
000: dt: 0.0000, sse=4930359.5, rms=4.84
rms = 5.24, time step reduction 1 of 3 to 0.250...
034: dt: 0.2500, sse=4793714.0, rms=4.603 (0.000%)
rms = 4.55, time step reduction 2 of 3 to 0.125...
035: dt: 0.2500, sse=4878499.5, rms=4.554 (0.000%)
036: dt: 0.1250, sse=4792314.5, rms=4.464 (0.000%)
rms = 4.42, time step reduction 3 of 3 to 0.062...
037: dt: 0.1250, sse=4864588.5, rms=4.422 (0.000%)
positioning took 0.4 minutes
mean border=66.8, 8300 (155) missing vertices, mean dist 0.1 [0.3 (%37.5)->0.4 (%62.5))]
%49 local maxima, %11 large gradients and %27 min vals, 1425 gradients ignored
tol=1.0e-04, sigma=0.2, host=xubun, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
mom=0.00, dt=0.50
writing pial surface to /usr/local/freesurfer/subjects/jmcoreg/surf/rh.pial...
writing smoothed curvature to rh.curv.pial
000: dt: 0.0000, sse=4886884.0, rms=4.53
rms = 4.80, time step reduction 1 of 3 to 0.250...
038: dt: 0.2500, sse=4881120.0, rms=4.396 (0.000%)
039: dt: 0.2500, sse=5239119.5, rms=4.313 (0.000%)
rms = 4.34, time step reduction 2 of 3 to 0.125...
040: dt: 0.1250, sse=5175228.5, rms=4.256 (0.000%)
041: dt: 0.1250, sse=5157703.0, rms=4.180 (0.000%)
042: dt: 0.1250, sse=5215984.0, rms=4.112 (0.000%)
rms = 4.06, time step reduction 3 of 3 to 0.062...
043: dt: 0.1250, sse=5285892.5, rms=4.062 (0.000%)
positioning took 0.6 minutes
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.curv.pial
writing smoothed area to rh.area.pial
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.area.pial
vertex spacing 0.97 +- 0.46 (0.07-->7.64) (max @ vno 73478 --> 72450)
face area 0.37 +- 0.32 (0.00-->7.72)
measuring cortical thickness...
writing cortical thickness estimate to 'thickness' file.
0 of 121444 vertices processed
25000 of 121444 vertices processed
50000 of 121444 vertices processed
75000 of 121444 vertices processed
100000 of 121444 vertices processed
0 of 121444 vertices processed
25000 of 121444 vertices processed
50000 of 121444 vertices processed
75000 of 121444 vertices processed
100000 of 121444 vertices processed
thickness calculation complete, 1370:2001 truncations.
23347 vertices at 0 distance
69357 vertices at 1 distance
67935 vertices at 2 distance
37149 vertices at 3 distance
16561 vertices at 4 distance
6959 vertices at 5 distance
3197 vertices at 6 distance
1434 vertices at 7 distance
707 vertices at 8 distance
376 vertices at 9 distance
209 vertices at 10 distance
146 vertices at 11 distance
67 vertices at 12 distance
69 vertices at 13 distance
52 vertices at 14 distance
51 vertices at 15 distance
57 vertices at 16 distance
33 vertices at 17 distance
43 vertices at 18 distance
43 vertices at 19 distance
58 vertices at 20 distance
writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.thickness
positioning took 9.2 minutes
#--------------------------------------------
#@# Surf Volume rh Wed Jul 27 03:58:47 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/surf

 mris_calc -o rh.area.mid rh.area add rh.area.pial

Saving result to 'rh.area.mid' (type = MRI_CURV_FILE)                       [ ok ]

 mris_calc -o rh.area.mid rh.area.mid div 2

Saving result to 'rh.area.mid' (type = MRI_CURV_FILE)                       [ ok ]

 mris_calc -o rh.volume rh.area.mid mul rh.thickness

Saving result to 'rh.volume' (type = MRI_CURV_FILE)                       [ ok ]
#-----------------------------------------
#@# WM/GM Contrast rh Wed Jul 27 03:58:47 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 pctsurfcon --s jmcoreg --rh-only

Log file is /usr/local/freesurfer/subjects/jmcoreg/scripts/pctsurfcon.log
Wed Jul 27 03:58:47 EDT 2016
setenv SUBJECTS_DIR /usr/local/freesurfer/subjects
cd /usr/local/freesurfer/subjects/jmcoreg/scripts
/usr/local/freesurfer/bin/pctsurfcon
$Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $
Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux
FREESURFER_HOME /usr/local/freesurfer
mri_vol2surf --mov /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.wm.mgh --regheader jmcoreg --cortex
srcvol = /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz
srcreg unspecified
srcregold = 0
srcwarp unspecified
surf = white
hemi = rh
ProjDist = -1
reshape = 0
interp = trilinear
float2int = round
GetProjMax = 0
INFO: float2int code = 0
INFO: changing type to float
Done loading volume
Computing registration from header.
  Using /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz as target reference.
Loading label /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label
Reading surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white
Done reading source surface
Mapping Source Volume onto Source Subject Surface
 1 -1 -1 -1
using old
Done mapping volume to surface
Number of source voxels hit = 100644
Masking with /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label
Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.wm.mgh
Dim: 121444 1 1
mri_vol2surf --mov /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.gm.mgh --projfrac 0.3 --regheader jmcoreg --cortex
srcvol = /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz
srcreg unspecified
srcregold = 0
srcwarp unspecified
surf = white
hemi = rh
ProjFrac = 0.3
thickness = thickness
reshape = 0
interp = trilinear
float2int = round
GetProjMax = 0
INFO: float2int code = 0
INFO: changing type to float
Done loading volume
Computing registration from header.
  Using /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz as target reference.
Loading label /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label
Reading surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white
Done reading source surface
Reading thickness /usr/local/freesurfer/subjects/jmcoreg/surf/rh.thickness
Done
Mapping Source Volume onto Source Subject Surface
 1 0.3 0.3 0.3
using old
Done mapping volume to surface
Number of source voxels hit = 112590
Masking with /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label
Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.gm.mgh
Dim: 121444 1 1
mri_concat /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.wm.mgh /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.gm.mgh --paired-diff-norm --mul 100 --o /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh
ninputs = 2
Checking inputs
nframestot = 2
Allocing output
Done allocing
Combining pairs
nframes = 1
Multiplying by 100.000000
Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh
mri_segstats --in /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh --annot jmcoreg rh aparc --sum /usr/local/freesurfer/subjects/jmcoreg/stats/rh.w-g.pct.stats --snr

$Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
cwd
cmdline mri_segstats --in /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh --annot jmcoreg rh aparc --sum /usr/local/freesurfer/subjects/jmcoreg/stats/rh.w-g.pct.stats --snr
sysname  Linux
hostname xubuntu-VirtualBox
machine  i686
user     fsuser
UseRobust  0
Constructing seg from annotation

Reading annotation
reading colortable from annotation file...
colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Seg base 2000
Loading /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh
Vertex Area is 0.637973 mm^3
Generating list of segmentation ids
Found  36 segmentations
Computing statistics for each segmentation
  0   2000                            unknown       0       0.000
  1   2001                           bankssts    1242     856.228
  2   2002            caudalanteriorcingulate     956     584.589
  3   2003                caudalmiddlefrontal    2865    1880.388
  4   2004                     corpuscallosum       0       0.000
  5   2005                             cuneus    1550     940.109
  6   2006                         entorhinal     386     251.896
  7   2007                           fusiform    3285    2203.494
  8   2008                   inferiorparietal    8321    5412.353
  9   2009                   inferiortemporal    3536    2241.070
 10   2010                   isthmuscingulate    1034     519.260
 11   2011                   lateraloccipital    5942    3660.308
 12   2012               lateralorbitofrontal    3213    2147.422
 13   2013                            lingual    3567    2534.294
 14   2014                medialorbitofrontal    2494    1564.271
 15   2015                     middletemporal    4043    2623.962
 16   2016                    parahippocampal     957     537.838
 17   2017                        paracentral    2870    1754.739
 18   2018                    parsopercularis    1823    1118.291
 19   2019                      parsorbitalis     989     626.447
 20   2020                   parstriangularis    2095    1297.465
 21   2021                      pericalcarine    1135     806.571
 22   2022                        postcentral    5537    3406.069
 23   2023                 posteriorcingulate     979     620.367
 24   2024                         precentral    7341    4539.927
 25   2025                          precuneus    4774    2965.838
 26   2026           rostralanteriorcingulate     927     619.841
 27   2027               rostralmiddlefrontal    7414    4762.159
 28   2028                    superiorfrontal    9664    6302.312
 29   2029                   superiorparietal    7248    4651.077
 30   2030                   superiortemporal    5632    3568.021
 31   2031                      supramarginal    4485    2944.416
 32   2032                        frontalpole     330     205.787
 33   2033                       temporalpole     457     312.722
 34   2034                 transversetemporal     498     294.336
 35   2035                             insula    3742    2327.231

Reporting on  34 segmentations
mri_segstats done
Cleaning up
#-----------------------------------------
#@# Parcellation Stats rh Wed Jul 27 03:58:59 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab jmcoreg rh white

computing statistics for each annotation in ../label/rh.aparc.annot.
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white...
reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.pial...
reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white...
INFO: assuming MGZ format for volumes.
INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
reading colortable from annotation file...
colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Saving annotation colortable ../label/aparc.annot.ctab

table columns are:
    number of vertices
    total surface area (mm^2)
    total gray matter volume (mm^3)
    average cortical thickness +- standard deviation (mm)
    integrated rectified mean curvature
    integrated rectified Gaussian curvature
    folding index
    intrinsic curvature index
    structure name

 1242    856   2121  2.851 0.658     0.106     0.026        8     1.3  bankssts
  956    585   1609  2.708 0.742     0.138     0.044       14     1.7  caudalanteriorcingulate
 2865   1880   5047  2.695 0.513     0.132     0.046       41     5.7  caudalmiddlefrontal
 1550    940   1776  1.946 0.509     0.184     0.156       64     8.0  cuneus
  386    252   1068  3.219 1.166     0.173     0.084       11     1.4  entorhinal
 3285   2203   7323  2.978 0.880     0.150     0.081       58    12.7  fusiform
 8321   5412  15598  2.646 0.791     0.157     0.111      300    39.1  inferiorparietal
 3536   2241   8826  3.320 0.868     0.147     0.072       70    10.4  inferiortemporal
 1034    519   1306  2.429 0.911     0.196     0.449      166    14.7  isthmuscingulate
 5942   3660  11464  2.808 0.907     0.174     0.132      285    29.1  lateraloccipital
 3213   2147   7052  3.094 0.796     0.141     0.074       63     8.1  lateralorbitofrontal
 3567   2534   5333  2.225 0.769     0.291     0.957     1382    55.9  lingual
 2494   1564   4302  2.451 0.769     0.171     0.830      479    18.5  medialorbitofrontal
 4043   2624   9634  3.048 0.883     0.142     0.092      125    18.6  middletemporal
  957    538   1322  2.153 0.780     0.125     0.207      125     4.8  parahippocampal
 2870   1755   4414  2.365 0.706     0.141     0.081       83    11.0  paracentral
 1823   1118   3459  2.814 0.713     0.136     0.075       43     5.9  parsopercularis
  989    626   2755  3.299 0.864     0.148     0.093       19     3.6  parsorbitalis
 2095   1297   3853  2.759 0.680     0.125     0.133      131     4.8  parstriangularis
 1135    807   1217  1.732 0.629     0.222     0.135      111     5.5  pericalcarine
 5537   3406   7592  2.063 0.646     0.106     0.056       90     9.9  postcentral
  979    620   1545  2.776 0.709     0.141     0.044       13     1.8  posteriorcingulate
 7341   4540  12656  2.630 0.605     0.120     0.069      119    25.1  precentral
 4774   2966   7583  2.619 0.711     0.140     0.086      130    17.2  precuneus
  927    620   1537  2.506 0.803     0.182     0.084       49     3.7  rostralanteriorcingulate
 7414   4762  12834  2.422 0.747     0.139     0.051      102    15.8  rostralmiddlefrontal
 9664   6302  19242  2.784 0.659     0.142     0.183      573    28.9  superiorfrontal
 7248   4651  10823  2.258 0.610     0.127     0.063      108    21.7  superiorparietal
 5632   3568  10895  2.648 0.783     0.140     0.112      233    29.2  superiortemporal
 4485   2944   8354  2.635 0.714     0.139     0.063       71    12.0  supramarginal
  330    206    888  2.954 0.632     0.192     0.094        8     1.4  frontalpole
  457    313   1824  3.458 0.893     0.171     0.103       20     1.6  temporalpole
  498    294    557  1.801 0.430     0.154     0.093       14     1.9  transversetemporal
 3742   2327   6451  2.827 0.885     0.192     0.589      467   139.3  insula
#-----------------------------------------
#@# Cortical Parc 2 rh Wed Jul 27 03:59:09 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg rh ../surf/rh.sphere.reg /usr/local/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs ../label/rh.aparc.a2009s.annot

setting seed for random number generator to 1234
using ../mri/aseg.mgz aseg volume to correct midline
$Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading atlas from /usr/local/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs...
reading color table from GCSA file....
average std = 1.9 0.2   using min determinant for regularization = 0.000
0 singular and 851 ill-conditioned covariance matrices regularized
input 1: CURVATURE FILE, flags 0, avgs 0, name sulc
input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
labeling surface...
286 labels changed using aseg
relabeling using gibbs priors...
000:   8303 changed, 121444 examined...
001:   1949 changed, 31707 examined...
002:    582 changed, 9987 examined...
003:    266 changed, 3228 examined...
004:    145 changed, 1532 examined...
005:     77 changed, 799 examined...
006:     42 changed, 436 examined...
007:     25 changed, 240 examined...
008:     11 changed, 144 examined...
009:      2 changed, 62 examined...
010:      1 changed, 10 examined...
011:      1 changed, 6 examined...
012:      0 changed, 11 examined...
62 labels changed using aseg
000: 277 total segments, 195 labels (2033 vertices) changed
001: 98 total segments, 16 labels (83 vertices) changed
002: 82 total segments, 0 labels (0 vertices) changed
10 filter iterations complete (10 requested, 103 changed)
rationalizing unknown annotations with cortex label
relabeling Medial_wall label...
1367 vertices marked for relabeling...
1367 labels changed in reclassification.
writing output to ../label/rh.aparc.a2009s.annot...
classification took 0 minutes and 36 seconds.
#-----------------------------------------
#@# Parcellation Stats 2 rh Wed Jul 27 03:59:45 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab jmcoreg rh white

computing statistics for each annotation in ../label/rh.aparc.a2009s.annot.
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white...
reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.pial...
reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white...
INFO: assuming MGZ format for volumes.
INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
reading colortable from annotation file...
colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt)
Saving annotation colortable ../label/aparc.annot.a2009s.ctab

table columns are:
    number of vertices
    total surface area (mm^2)
    total gray matter volume (mm^3)
    average cortical thickness +- standard deviation (mm)
    integrated rectified mean curvature
    integrated rectified Gaussian curvature
    folding index
    intrinsic curvature index
    structure name

  878    565   1520  2.274 0.801     0.145     0.050       12     2.1  G_and_S_frontomargin
 1341    856   2149  2.518 0.763     0.177     0.209      145     6.8  G_and_S_occipital_inf
 1546    916   2257  2.127 0.499     0.139     0.067       39     5.2  G_and_S_paracentral
 1194    735   2123  2.633 0.707     0.138     0.095       48     6.0  G_and_S_subcentral
  783    497   1761  2.842 0.807     0.156     0.060       14     2.0  G_and_S_transv_frontopol
 2591   1748   4296  2.727 0.831     0.175     0.383      293    16.7  G_and_S_cingul-Ant
 1301    859   2478  3.088 0.593     0.136     0.049       14     2.6  G_and_S_cingul-Mid-Ant
 1410    966   2219  2.373 0.658     0.157     0.101       35     5.2  G_and_S_cingul-Mid-Post
  173     96    293  2.637 0.509     0.152     0.068        4     0.5  G_cingul-Post-dorsal
  585    258    675  2.326 0.859     0.263     0.723      155    13.3  G_cingul-Post-ventral
 1232    715   1342  1.809 0.422     0.163     0.116       44     4.9  G_cuneus
 1150    672   2305  2.704 0.834     0.162     0.109       43     5.7  G_front_inf-Opercular
  228    156    588  3.010 0.943     0.167     0.060        3     0.5  G_front_inf-Orbital
 1091    592   2338  2.930 0.690     0.144     0.235       90     3.8  G_front_inf-Triangul
 3382   2109   6845  2.560 0.657     0.149     0.067       67     9.5  G_front_middle
 6762   4094  14276  2.763 0.638     0.147     0.397      750    27.4  G_front_sup
  782    429   1193  2.466 0.852     0.258     2.185      293   117.9  G_Ins_lg_and_S_cent_ins
  677    392   1762  3.354 1.022     0.173     0.186       54     3.5  G_insular_short
 2425   1428   5007  2.664 0.878     0.202     0.190      150    18.2  G_occipital_middle
 1662    967   3274  2.442 0.814     0.134     0.118       44    11.0  G_occipital_sup
 1224    799   3017  2.752 0.851     0.158     0.066       21     3.4  G_oc-temp_lat-fusifor
 2616   1783   3908  2.199 0.787     0.294     0.732      891    44.5  G_oc-temp_med-Lingual
 1643    942   3230  2.721 1.081     0.186     0.271      185    19.6  G_oc-temp_med-Parahip
 2329   1485   6568  3.133 0.861     0.154     0.105       66     8.3  G_orbital
 3028   1882   6450  2.581 0.819     0.173     0.149      104    18.9  G_pariet_inf-Angular
 2395   1465   5126  2.702 0.755     0.146     0.076       45     8.0  G_pariet_inf-Supramar
 2089   1276   3431  2.254 0.493     0.135     0.062       32     5.4  G_parietal_sup
 2095   1162   3150  2.084 0.536     0.113     0.099       62     5.4  G_postcentral
 2906   1544   5759  2.772 0.513     0.111     0.089       43    13.3  G_precentral
 2316   1261   3986  2.583 0.604     0.150     0.110       78    10.2  G_precuneus
  667    424   1640  2.583 0.820     0.157     0.056       13     1.5  G_rectus
  431    271    449  1.842 0.694     0.235     0.233       42     2.7  G_subcallosal
  378    217    443  1.709 0.374     0.155     0.084        8     1.3  G_temp_sup-G_T_transv
 2205   1317   5111  2.794 0.747     0.139     0.098       99    10.8  G_temp_sup-Lateral
  433    285    724  2.270 0.744     0.149     0.109       18     1.7  G_temp_sup-Plan_polar
  909    561   1954  2.902 0.699     0.148     0.093       19     3.1  G_temp_sup-Plan_tempo
 2368   1448   6454  3.298 0.936     0.172     0.102       67    10.4  G_temporal_inf
 2231   1416   6041  3.102 0.872     0.159     0.134       66    15.4  G_temporal_middle
  401    254    589  2.516 0.476     0.100     0.040       41     0.9  Lat_Fis-ant-Horizont
  159    114    307  2.911 0.402     0.168     0.099        3     0.6  Lat_Fis-ant-Vertical
 1247    882   1972  2.936 0.634     0.140     0.057       15     3.3  Lat_Fis-post
 2678   1554   4979  2.809 0.999     0.179     0.146      103    17.5  Pole_occipital
 1294    832   4422  3.355 0.998     0.173     0.105       81     5.5  Pole_temporal
 1420   1014   1632  2.031 0.881     0.209     0.148      116     9.2  S_calcarine
 2888   2037   3600  1.988 0.663     0.111     0.032       21     4.1  S_central
 1260    886   2091  2.758 0.699     0.113     0.029       10     1.3  S_cingul-Marginalis
  578    397   1125  3.739 0.554     0.134     0.041        5     1.0  S_circular_insula_ant
 1429    961   1959  2.323 0.660     0.156     0.124      100     8.1  S_circular_insula_inf
 1140    787   1934  3.089 0.499     0.114     0.035        7     1.6  S_circular_insula_sup
  676    463   1313  3.584 0.750     0.112     0.033        5     0.9  S_collat_transv_ant
  165    127    296  3.048 0.495     0.129     0.034        1     0.2  S_collat_transv_post
 2180   1447   3308  2.567 0.620     0.127     0.041       21     3.7  S_front_inf
 1648   1053   2663  2.226 0.620     0.128     0.044       21     3.0  S_front_middle
 2494   1687   3597  2.430 0.590     0.119     0.037       19     3.2  S_front_sup
  402    302    562  2.560 0.545     0.146     0.047        4     0.7  S_interm_prim-Jensen
 2926   1988   3743  2.171 0.622     0.122     0.050       47     6.9  S_intrapariet_and_P_trans
  809    563   1366  2.846 0.711     0.136     0.051        9     1.6  S_oc_middle_and_Lunatus
 1774   1303   2922  2.835 0.754     0.142     0.050       44     3.6  S_oc_sup_and_transversal
  588    386    780  2.272 0.447     0.174     0.163       20     4.4  S_occipital_ant
  611    446   1128  3.349 0.903     0.110     0.022        3     0.6  S_oc-temp_lat
 1278    978   2120  2.415 0.680     0.192     1.102      479     5.8  S_oc-temp_med_and_Lingual
  506    338    727  2.397 0.790     0.122     0.032        3     0.7  S_orbital_lateral
  581    435    957  2.726 0.773     0.142     0.072        7     1.9  S_orbital_med-olfact
 1238    833   2478  3.036 0.719     0.120     0.044       11     2.5  S_orbital-H_Shaped
 1776   1180   2378  2.439 0.720     0.153     0.115       57     7.7  S_parieto_occipital
  862    478    898  2.324 0.814     0.154     0.108       31     3.6  S_pericallosal
 1959   1354   2486  2.151 0.485     0.090     0.019        9     1.6  S_postcentral
 1491   1033   2432  2.787 0.562     0.112     0.030       10     1.8  S_precentral-inf-part
 1558   1064   2217  2.558 0.550     0.112     0.027       10     1.8  S_precentral-sup-part
  180     86    272  2.870 0.781     0.144     0.055        3     0.4  S_suborbital
 1019    663   1591  2.727 0.823     0.128     0.046       13     1.7  S_subparietal
  876    594   1480  3.043 0.750     0.127     0.035        7     1.3  S_temporal_inf
 5358   3703   9241  2.834 0.721     0.111     0.034       64     7.9  S_temporal_sup
  426    272    550  2.311 0.621     0.175     0.127       20     2.9  S_temporal_transverse
#-----------------------------------------
#@# Cortical Parc 3 rh Wed Jul 27 03:59:56 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg rh ../surf/rh.sphere.reg /usr/local/freesurfer/average/rh.DKTatlas40.gcs ../label/rh.aparc.DKTatlas40.annot

setting seed for random number generator to 1234
using ../mri/aseg.mgz aseg volume to correct midline
$Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading atlas from /usr/local/freesurfer/average/rh.DKTatlas40.gcs...
reading color table from GCSA file....
average std = 0.9   using min determinant for regularization = 0.008
0 singular and 237 ill-conditioned covariance matrices regularized
input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
labeling surface...
1648 labels changed using aseg
relabeling using gibbs priors...
000:   2486 changed, 121444 examined...
001:    621 changed, 10762 examined...
002:    173 changed, 3363 examined...
003:     50 changed, 970 examined...
004:     27 changed, 284 examined...
005:     15 changed, 141 examined...
006:      5 changed, 70 examined...
007:      6 changed, 35 examined...
008:      5 changed, 38 examined...
009:      2 changed, 33 examined...
010:      1 changed, 15 examined...
011:      3 changed, 9 examined...
012:      0 changed, 10 examined...
224 labels changed using aseg
000: 83 total segments, 50 labels (501 vertices) changed
001: 34 total segments, 1 labels (1 vertices) changed
002: 33 total segments, 0 labels (0 vertices) changed
10 filter iterations complete (10 requested, 33 changed)
rationalizing unknown annotations with cortex label
relabeling unknown label...
relabeling corpuscallosum label...
868 vertices marked for relabeling...
868 labels changed in reclassification.
writing output to ../label/rh.aparc.DKTatlas40.annot...
classification took 0 minutes and 32 seconds.
#-----------------------------------------
#@# Parcellation Stats 3 rh Wed Jul 27 04:00:27 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/scripts

 mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas40.stats -b -a ../label/rh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab jmcoreg rh white

computing statistics for each annotation in ../label/rh.aparc.DKTatlas40.annot.
reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz...
reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white...
reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.pial...
reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white...
INFO: assuming MGZ format for volumes.
INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
reading colortable from annotation file...
colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt)
Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab

table columns are:
    number of vertices
    total surface area (mm^2)
    total gray matter volume (mm^3)
    average cortical thickness +- standard deviation (mm)
    integrated rectified mean curvature
    integrated rectified Gaussian curvature
    folding index
    intrinsic curvature index
    structure name

  999    612   1711  2.738 0.745     0.139     0.046       14     1.9  caudalanteriorcingulate
 2946   1944   5209  2.717 0.505     0.132     0.046       42     5.8  caudalmiddlefrontal
 1885   1160   2142  1.946 0.483     0.176     0.136       68     8.6  cuneus
  458    296   1265  3.353 1.190     0.173     0.080       13     1.6  entorhinal
 2924   1960   6475  2.941 0.873     0.150     0.083       53    11.4  fusiform
 8090   5271  15194  2.652 0.792     0.158     0.111      296    38.1  inferiorparietal
 3804   2423   9473  3.306 0.863     0.148     0.072       74    11.5  inferiortemporal
 1077    536   1345  2.452 0.933     0.186     0.427      159    14.6  isthmuscingulate
 6111   3775  11761  2.799 0.906     0.172     0.129      288    29.2  lateraloccipital
 3735   2453   8064  2.956 0.846     0.142     0.075       76     9.8  lateralorbitofrontal
 3530   2534   5330  2.221 0.769     0.290     0.950     1348    52.5  lingual
 2071   1289   3754  2.410 0.824     0.186     0.988      465    18.5  medialorbitofrontal
 4914   3221  11148  3.013 0.852     0.138     0.083      133    20.3  middletemporal
  978    546   1304  2.157 0.728     0.143     0.268      166     8.3  parahippocampal
 3009   1847   4645  2.366 0.704     0.143     0.090       91    11.9  paracentral
 1916   1184   3673  2.827 0.701     0.141     0.166      115     6.2  parsopercularis
 1047    672   2715  3.259 0.878     0.149     0.088       23     3.6  parsorbitalis
 2255   1402   4054  2.752 0.681     0.124     0.051       64     5.2  parstriangularis
 1103    785   1166  1.692 0.589     0.222     0.134      110     5.3  pericalcarine
 6012   3702   8409  2.109 0.665     0.110     0.056       97    11.0  postcentral
 1002    634   1562  2.748 0.710     0.142     0.044       14     1.8  posteriorcingulate
 6982   4295  12152  2.605 0.610     0.118     0.069      115    24.3  precentral
 4863   2994   7725  2.595 0.716     0.140     0.086      131    17.6  precuneus
 1083    718   1733  2.536 0.796     0.185     0.083       63     3.9  rostralanteriorcingulate
 5131   3253   9234  2.454 0.735     0.141     0.055       73    11.8  rostralmiddlefrontal
12048   7862  22948  2.715 0.679     0.139     0.155      599    32.8  superiorfrontal
 6359   4096   9578  2.261 0.604     0.127     0.066       98    20.3  superiorparietal
 7241   4601  14414  2.677 0.807     0.148     0.130      353    43.1  superiortemporal
 4074   2693   7625  2.671 0.712     0.133     0.057       56    10.2  supramarginal
  489    286    539  1.792 0.425     0.155     0.093       14     1.8  transversetemporal
 3195   2039   5918  2.971 0.880     0.181     0.610      366   127.2  insula
#--------------------------------------------
#@# Cortical ribbon mask Wed Jul 27 04:00:37 EDT 2016
/usr/local/freesurfer/subjects/jmcoreg/mri

 mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon jmcoreg

Segmentation fault (core dumped)
Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux

recon-all -s jmcoreg exited with ERRORS at Wed Jul 27 04:00:38 EDT 2016

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting