Hello,
I have finished running segmentHA_T1.sh on my data and have gotten all the .mgz and .txt files in my mri folder. I would like to collect all the hippocampal volumes and get them into a table to run stats on.
When reading the documentation it says that
It will also produce files in the stats folder called hipposubfields.[lr]h.T1.v2x.stats and amygdalar-nuclei.[lr]h.T1.v2x.stats. These can be compiled across subject with, eg,
asegstats2table --statsfile=hipposubfields.lh.T1.v21.stats --tablefile=hipposubfields.lh.T1.v21.dat ...
However, the stats folders for my subjects do not have these files in the stats folder. Just the usual
aseg.stats
lh.aparc.a2009s.stats
lh.aparc.DKTatlas.stats
lh.aparc.pial.stats
lh.aparc.stats
lh.BA_exvivo.stats
lh.BA_exvivo.thresh.stats
lh.curv.stats
lh.w-g.pct.stats
rh.aparc.a2009s.stats
rh.aparc.DKTatlas.stats
rh.aparc.pial.stats
rh.aparc.stats
rh.BA_exvivo.stats
rh.BA_exvivo.thresh.stats
rh.curv.stats
rh.w-g.pct.stats
wmparc.stats
Is there a way to get the correct stats files in my stats folder so I can use the suggested command? Or is there a way to extract the information from the .txt files?
Any help you can provide would be greatly appreciated!
Daniel CallowPhD Student, Neuroscience and Cognitive Science
Exercise for Brain Health Lab
University of Maryland, College Park
443-254-6298