Dear experts,
We have a pool of 490 subjects and will work on a linux grid for the recon.
For this analysis we are only interested in subcortical areas.
Question:
Is it possible to run only the subcortical segmentation (and leave out the
cortical
segmentation)?
(Is it possible to run the -subcortseg of recon without any other processing?)
What flag would be used for this instead of the -all option, or
is a different general command available that limits the segmentation to the
subcortical areas only?