######## Preparing run #########
Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
INFO: SUBJECTS_DIR is /tmp/adni/freesurfer/6.0.0
Actual FREESURFER_HOME /usr/local/freesurfer-6.0.0
Linux av03 3.19.0-51-generic #57~14.04.1-Ubuntu SMP Fri Feb 19 14:36:55 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
'/usr/local/freesurfer-6.0.0/bin/recon-all' -> '/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/scripts/recon-all.local-copy'
-cw256 option is now persistent (remove with -clean-cw256)
/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1

 mri_convert /tmp/adni/freesurfer/6.0.0/5fb413df-a275-42f6-9c58-d03179ad2c79/ADNI_002_S_0413_MR_MPRAGE_SENSE2__br_raw_20151203142649292_1_S322083_I569631.dcm /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001.mgz 

mri_convert.bin /tmp/adni/freesurfer/6.0.0/5fb413df-a275-42f6-9c58-d03179ad2c79/ADNI_002_S_0413_MR_MPRAGE_SENSE2__br_raw_20151203142649292_1_S322083_I569631.dcm /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001.mgz 
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/adni/freesurfer/6.0.0/5fb413df-a275-42f6-9c58-d03179ad2c79/ADNI_002_S_0413_MR_MPRAGE_SENSE2__br_raw_20151203142649292_1_S322083_I569631.dcm...
Starting DICOMRead2()
dcmfile = /tmp/adni/freesurfer/6.0.0/5fb413df-a275-42f6-9c58-d03179ad2c79/ADNI_002_S_0413_MR_MPRAGE_SENSE2__br_raw_20151203142649292_1_S322083_I569631.dcm
dcmdir = /tmp/adni/freesurfer/6.0.0/5fb413df-a275-42f6-9c58-d03179ad2c79
Ref Series No = 401
Found 172 files, checking for dicoms
Found 170 dicom files in series.
First Sorting
Computing Slice Direction
Vs: -1.2 0 0
Vs: -1 0 0
Second Sorting
IsDWI = 0, IsPhilipsDWI = 0
Counting frames
nframes = 1
nslices = 170
ndcmfiles = 170
PE Dir = ROW (dicom read)
Loading pixel data
TR=6.76, TE=3.11, TI=0.00, flip angle=9.00
i_ras = (-0, -1, 0)
j_ras = (-0, -0, -1)
k_ras = (1, -0, 0)
writing to /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001.mgz...
/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1

 mri_convert /tmp/adni/freesurfer/6.0.0/5303bac8-bbb6-42e8-9971-ae92aab53290/ADNI_002_S_0413_MR_MPRAGE_br_raw_20151203142643500_1_S322084_I569632.dcm /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.mgz 

mri_convert.bin /tmp/adni/freesurfer/6.0.0/5303bac8-bbb6-42e8-9971-ae92aab53290/ADNI_002_S_0413_MR_MPRAGE_br_raw_20151203142643500_1_S322084_I569632.dcm /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.mgz 
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/adni/freesurfer/6.0.0/5303bac8-bbb6-42e8-9971-ae92aab53290/ADNI_002_S_0413_MR_MPRAGE_br_raw_20151203142643500_1_S322084_I569632.dcm...
Starting DICOMRead2()
dcmfile = /tmp/adni/freesurfer/6.0.0/5303bac8-bbb6-42e8-9971-ae92aab53290/ADNI_002_S_0413_MR_MPRAGE_br_raw_20151203142643500_1_S322084_I569632.dcm
dcmdir = /tmp/adni/freesurfer/6.0.0/5303bac8-bbb6-42e8-9971-ae92aab53290
Ref Series No = 301
Found 172 files, checking for dicoms
Found 170 dicom files in series.
First Sorting
Computing Slice Direction
Vs: -1.2 0 0
Vs: -1 0 0
Second Sorting
IsDWI = 0, IsPhilipsDWI = 0
Counting frames
nframes = 1
nslices = 170
ndcmfiles = 170
PE Dir = ROW (dicom read)
Loading pixel data
TR=6.81, TE=3.16, TI=0.00, flip angle=9.00
i_ras = (-0, -1, 0)
j_ras = (-0, -0, -1)
k_ras = (1, -0, 0)
writing to /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.mgz...
#--------------------------------------------
#@# MotionCor Wed Aug 16 19:57:59 EDT 2017
Found 2 runs
/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001.mgz
/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.mgz
Checking for (invalid) multi-frame inputs...
Checking for (invalid) multi-frame inputs...
#-----------------------------------------------
/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1

 mri_robust_template --mov /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001.mgz /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.mgz --average 1 --template /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/rawavg.mgz --satit --inittp 1 --fixtp --noit --iscale --iscaleout /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001-iscale.txt /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002-iscale.txt --subsample 200 --lta /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001.lta /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.lta 

$Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $

--mov: Using /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001.mgz as movable/source volume.
--mov: Using /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.mgz as movable/source volume.
    Total: 2 input volumes
--average: Using method 1 for template computation.
--template: Using /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/rawavg.mgz as template output volume.
--satit: Will estimate SAT iteratively!
--inittp: Using TP 1 as target for initialization
--fixtp: Will map everything to init TP!
--noit: Will output only first template (no iterations)!
--iscale: Enableing intensity scaling!
--iscaleout: Will perform intensity scaling and output results
--subsample: Will subsample if size is larger than 200 on all axes!
--lta: Will output LTA transforms
Setting iscale ...
reading source '/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001.mgz'...
converting source '/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/001.mgz' to bspline ...
MRItoBSpline degree 3
reading source '/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.mgz'...
converting source '/tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.mgz' to bspline ...
MRItoBSpline degree 3
ERROR: MultiRegistration::loadMovables: images have different voxel sizes.
  Currently not supported, maybe first make conform?
  Debug info: size(1) = 1, 1, 1.2   size(0) = 1.05469, 1.05469, 1.2
MultiRegistration::loadMovables: voxel size is different /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/mri/orig/002.mgz.

No such file or directory
Linux av03 3.19.0-51-generic #57~14.04.1-Ubuntu SMP Fri Feb 19 14:36:55 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s 0a9cfea9-7668-4a2c-927c-378ff5109fe1 exited with ERRORS at Wed Aug 16 19:58:02 EDT 2017

For more details, see the log file /tmp/adni/freesurfer/6.0.0/0a9cfea9-7668-4a2c-927c-378ff5109fe1/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

Something went wrong. Cleaning up output dir: 0a9cfea9-7668-4a2c-927c-378ff5109fe1