Hi Katie

Can you give us more info? What command line did you run? Can you send us the recon-all.log file from the subject so we can see what step it is on? Usually this means the topology fixer is trying to fix something giant, like the cerebellum attached to cortex or skull left around or something

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Katherine Andrade
Sent: Sunday, February 7, 2021 5:22 PM
To: Freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Issue with Segmentation

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To whom this may concern,

I've been running segmentation for over 100 hours and I'm  not entirely sure how to fix this issue. Is this the right address to ask for help?

Best,

Katie