I downloaded the file, but cannot get it to run. I changed permissions to make it executable, but I get 

-bash: ./mris_apply_reg: cannot execute binary file

I'm using Mac OS X 10.11

Peggy

On Thu, Dec 17, 2015 at 4:24 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
Use mris_apply_reg. You can get a copy here

ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_apply_reg


Run with --help to get docs
doug

On 12/17/2015 01:02 PM, Peggy Skelly wrote:
> Hi,
>
> I am attempting to move an annotation file from the right to left
> hemisphere. I have run xhemi registration with:
>
> surfreg —s $subj —t fsaverage_sym —lhrh
> surfreg —s $subj —t fsaverage_sym —lhrh —xhemi
>
> The annotation file is rh.myclusters.annot in the $subj/xhemi/label
> subdirectory. I've tried using both mri_surf2surf and mris_apply_reg:
>
> mri_surf2surf --srcsubject s1315_base/xhemi --sval-annot
> $SUBJECTS_DIR/s1315_base/xhemi/label/rh.myclusters.annot --tval
> $SUBJECTS_DIR/s1315_base/label/lh.myclusters.annot --trgsubject
> s1315_base --srchemi rh --trghemi lh --srcsurfreg
> fsaverage_sym.sphere.reg --trgsurfreg fsaverage_sym.sphere.reg
>
> mris_apply_reg --src-annot
> $SUBJECTS_DIR/s1315_base/xhemi/label/rh.myclusters.annot --trg
> $SUBJECTS_DIR/s1315_base/label/lh.myclusters.annot --streg
> $SUBJECTS_DIR/s1315_base/xhemi/surf/rh.fsaverage_sym.sphere.reg
> $SUBJECTS_DIR/s1315_base/surf/lh.fsaverage_sym.sphere.reg  --no-rev
>
> I've tried mris_apply_reg with and without the '--no-rev' flag. The
> output from each of these commands is the same: the clusters are on
> the medial aspect of the LH. They were clusters in the supramarginal
> and temporal regions on the RH, so I was expecting them to be in the
> same regions on the LH.
>
> Thanks,
> Peggy
>
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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