There might be some issues with jpeg compressed dicom files in 7.2 and before. Can you try using 7.3 to do the conversion with mri_convert or dcmunpack (add -dcm2niix to either one to get the new, better code).

On 9/5/2022 10:53 PM, Beatrice Everall wrote:

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Hi there :)

I am trying to run recon-all on MRI data; I have multiple sequences including T1 maps and MAGiC. I have tried to run recon-all on these sequences but get the same error each time:

ERROR: 512, see /tmp/tmp.H88WWu.dcmdjpeg.out for more details

However when looking in that location I only see a H88WWu file, not H88WWu.dcmdjpeg.out.

I am using the Ubuntu 18.04 VM with the 7.2.0 release.

Attached is the recon-all.log.

Any suggestions would be very appreciated!

Thanks

Beatrice
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