That won't work. If you are going to use anat2std.register.dat, then you will need to specify the individual subject instead of fsaverage. For fsaverage, use $FREESURFER_HOME/average/mni152.register.dat

doug

On 8/1/13 7:11 PM, Yang, Daniel wrote:

Hi FreeSurfer Expert,

So GFEAT results are in MNI152 standard space. Is there a way I can visualize the GFEAT results on a fsaverage surface?

For example, if I do the following, would that be okay?
tksurfer fsaverage lh inflated -annot aparc.annot \
  -ov fbert.gfeat/cope1.feat/stats/zstat1.nii.gz \
  -ovreg fbert1.feat/reg/freesurfer/anat2std.register.dat \
  -fthresh 2.3 -fmid 3.3 -fslope 1
Thanks!

Daniel

--

Yung-Jui "Daniel" Yang, PhD

Postdoctoral Researcher

Yale Child Study Center

New Haven, CT

(203) 737-5454
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