Hi Fateme,

Unfortunately, `-bigventricles` isn't supported on the infant recon stream, that's a feature of the samseg stream.

-Paul

On Fri, Feb 4, 2022 at 1:58 PM Fateme Sadat Haghpanah <fh2382@columbia.edu> wrote:

        External Email - Use Caution       

Dear FreeSurfer Developers,

I am trying to use the InfantFS segmentation pipeline for segmenting images with Ventriculomegaly. I have looked up the archive and found out the -bigventricles. I have tried the following commands but it did not work. Can you help me to figure out how I can segment these images with infantFS?

infant_recon_all -bigventricles --newborn --s  ${SUBJ} —> ERROR: Flag -bigventricles unrecognized

Regards,
Fateme

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer