I'm trying to compile an annotation using mris_label2annot after transferring fsaverage5 labels to a single subject. I'm getting a strange error. Essentially it looks like it can't find most of my transferred labels, which doesn't make sense as they are definitely in the directory in which I'm executing the command. The same error happens with both hemispheres. I am including an 'unknown' entry in the ctab files. I've tried changing things around with my ctab files and it looks like it just won't take in anything past the first '-l' flag in the mris_label2annot command.
Number of ctab entries 2
$Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $
cwd /extern/research/PI/training/beachpau/Beach_FreeSurfer_data/HS_001/label
cmdline mris_label2annot --s HS_001 --h rh --ctab rh.Yeo_7Net_split.ctab --annot Yeo_7Net_split_aparc --l rh.Background+FreeSurfer_Defined_Medial_Wall.label --l rh.7Networks_RH_Vis.label --l rh.7Networks_RH_SomMot.label --l rh.7Networks_RH_DorsAttn_Post.label --l rh.7Networks_RH_DorsAttn_FEF.label --l rh.7Networks_RH_DorsAttn_PrCv.label --l rh.7Networks_RH_SalVentAttn_TempOccPar.label --l rh.7Networks_RH_SalVentAttn_PrC.label --l rh.7Networks_RH_SalVentAttn_FrOper.label --l rh.7Networks_RH_SalVentAttn_PFCv.label --l rh.7Networks_RH_SalVentAttn_PFCl.label --l rh.7Networks_RH_SalVentAttn_Med.label --l rh.7Networks_RH_Limbic_OFC.label --l rh.7Networks_RH_Limbic_TempPole.label --l rh.7Networks_RH_Cont_Par.label --l rh.7Networks_RH_Cont_Temp.label --l rh.7Networks_RH_Cont_PFCv.label --l rh.7Networks_RH_Cont_PFCl.label --l rh.7Networks_RH_Cont_pCun.label --l rh.7Networks_RH_Cont_Cing.label --l rh.7Networks_RH_Cont_PFCmp.label --l rh.7Networks_RH_Default_Par.label --l rh.7Networks_RH_Default_Temp.label --l rh.7Networks_RH_Default_PFCv.label --l rh.7Networks_RH_Default_PFCm.label --l rh.7Networks_RH_Default_PCC.label
sysname Linux
machine x86_64
user beachpau
subject HS_001
hemi rh
SUBJECTS_DIR /extern/research/PI/training/beachpau/Beach_FreeSurfer_data
ColorTable rh.Yeo_7Net_split.ctab
AnnotName Yeo_7Net_split_aparc
nlables 26
LabelThresh 0 0.000000
Loading /extern/research/PI/training/beachpau/Beach_FreeSurfer_data/HS_001/surf/rh.orig
1 65793 rh.Background+FreeSurfer_Defined_Medial_Wall
2 -1 NOT_FOUND
3 -1 NOT_FOUND
4 -1 NOT_FOUND
5 -1 NOT_FOUND
6 -1 NOT_FOUND
7 -1 NOT_FOUND
8 -1 NOT_FOUND
9 -1 NOT_FOUND
10 -1 NOT_FOUND
11 -1 NOT_FOUND
12 -1 NOT_FOUND
13 -1 NOT_FOUND
14 -1 NOT_FOUND
15 -1 NOT_FOUND
16 -1 NOT_FOUND
17 -1 NOT_FOUND
18 -1 NOT_FOUND
19 -1 NOT_FOUND
20 -1 NOT_FOUND
21 -1 NOT_FOUND
22 -1 NOT_FOUND
23 -1 NOT_FOUND
24 -1 NOT_FOUND
25 -1 NOT_FOUND
26 -1 NOT_FOUND
Mapping unhit to unknown
Found 5 unhit vertices
Writing annot to /extern/research/PI/training/beachpau/Beach_FreeSurfer_data/HS_001/label/rh.Yeo_7Net_split_aparc.annot
I have attached my .ctab files in case they would help.