Hi Wei,

You need to convert to nifti first, but you can do that with mri_convert:

mri_convert ADNI_002_S_0295_MR_Axial_T2-Star__br_raw_20110602125226394_36_S110471_I238619.dcm. ADNI_002_S_0295_MR_Axial_T2-Star__br_raw_20110602125226394_36_S110471_I238619.nii.gz

Cheers,

/Eugenio


Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com



On 17 Nov 2021, at 11:08, Wei Shao <wshao@research.baycrest.org> wrote:

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Hi, FreeSurfer experts

I'm wondering if there is a way to do hippocampal subfield segmentation with T2 DCM images, instead of NifTi. like this 

ADNI_002_S_0295_MR_Axial_T2-Star__br_raw_20110602125226394_36_S110471_I238619.dcm 


Best,
Wei
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