Hi Sudhin, this looks like an AFNI question. Have you tried posting to
the AFNI list?
doug

Sudhin A. Shah wrote:
>
>
>
>
> On Jun 17, 2011, at 6:25 PM, "Sudhin A. Shah" <sut2006@med.cornell.edu
> <mailto:sut2006@med.cornell.edu>> wrote:
>
>> Hi,
>>
>> Can somebody please help me figure out how to correct this issue?
>>
>> 1 subject - 2 functional scans
>>
>> 1) run recon-all on subject anatomical.
>>
>> 2) process functional series (using AFNI/FSL) - each individually.
>>
>> 3) use
>> (http://afni.nimh.nih.gov/pub/dist/doc/program_help/@ROI_Corr_Mat.html)
>> @ROI_Corr_Mat -ts proc_func1 -roi aparc+aseg -prefix all (each
>> individually)
>>
>> This works (I don't know why since I am not doing anything to
>> register them to a common space).
>>
>> 4) I get a square matrix of 109 (n x n correlation matrix) in 1
>> timepoint and 112 in 2nd timepoint.
>>
>> I would like to get the /exact same number /so I can compare them! Of
>> course I can manually adjust the rows/columns later, but I am not
>> sure this is the smartest way to do this.
>>
>> Can I do all the steps in Freesurfer?
>>
>> Thank you,
>> S
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
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